Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 BEGAIN Gene 0 4.16 43.63 33.69 11.13 4.15 29.77 12.96 19.82 21.26 52.44 0.37 0.00 0.00 0.93 0.24 0.11 0.25 357.76 148.36 281.37 32.32 43.01 19.65 2 443071 Transcript 0 0.76 1.17 0.61 0.91 0.00 0.61 1.35 0.14 0.31 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.42 26.37 18.53 1.34 1.22 1.22 3 355173 Transcript 0 1.52 8.57 9.03 2.74 0.00 15.50 6.65 2.92 6.52 8.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 141.48 37.66 90.08 5.92 14.04 8.54 4 IG2_SR1 SilentIntergenicRegion 0 0.55 4.19 6.04 1.85 0.77 2.85 2.94 2.51 5.80 5.16 0.05 0.03 0.00 0.01 0.01 0.00 0.00 21.75 9.38 14.97 3.20 3.45 3.18 5 ER1a ExonRegion 0 0.00 3.21 0.02 1.15 0.00 0.00 0.72 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.21 43.87 32.89 0.00 0.00 0.00 6 E1_Da NovelBoundary 0 0.00 2.57 1.27 3.33 0.00 0.00 2.25 1.60 3.59 2.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68.27 96.00 72.80 0.00 0.00 4.01 7 E1b_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER1b ExonRegion 0 0.17 0.98 0.00 1.36 0.00 0.00 1.06 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.31 34.53 31.66 0.18 0.00 0.00 9 E2a_E3b KnownJunction 0 3.04 16.44 13.16 4.59 0.00 25.95 10.25 4.23 10.82 13.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 216.18 51.48 138.13 8.65 21.68 14.85 10 ER2a ExonRegion 0 0.00 0.70 4.90 0.89 0.00 5.06 3.06 1.61 2.21 4.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66.77 23.84 42.04 3.19 6.39 2.23 11 I2 Intron 0 0.79 6.30 3.30 1.42 0.59 4.46 4.11 2.74 5.18 8.01 0.08 0.07 0.10 0.05 0.00 0.02 0.00 137.89 66.87 125.95 9.77 9.56 7.09 12 I2_SR1 SilentIntronRegion 0 0.76 5.71 2.86 1.22 0.54 4.21 3.95 2.55 5.11 7.74 0.09 0.04 0.09 0.05 0.00 0.02 0.00 137.64 67.49 128.03 9.81 9.39 6.89 13 I2_AR1 ActiveIntronRegion 0 4.70 19.75 5.06 4.91 0.00 8.35 5.97 1.73 4.72 8.82 0.00 0.00 0.00 2.31 0.00 0.00 0.00 113.37 62.93 133.85 7.54 24.54 12.99 14 I2_SR2 SilentIntronRegion 0 1.01 13.65 9.29 3.99 1.25 7.81 6.30 5.41 6.37 11.90 0.00 0.50 0.15 0.00 0.00 0.00 0.00 148.51 61.13 103.24 9.45 11.45 9.64 15 ER3a ExonRegion 0 2.12 2.54 1.84 1.36 0.00 1.83 2.98 0.43 0.93 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.94 44.60 23.94 3.86 3.65 3.67 16 ER3b ExonRegion 0 6.30 26.93 26.32 6.40 2.96 10.80 6.13 16.69 16.03 35.50 0.61 0.00 0.00 1.27 0.00 0.00 0.00 269.04 182.93 250.97 29.02 31.01 20.48 17 E3a_E4a KnownJunction 0 3.78 49.73 51.18 17.55 7.47 33.90 5.92 31.01 29.28 77.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 395.47 238.03 417.44 59.00 88.54 21.77 18 I3 Intron 0 1.24 18.08 3.22 2.69 0.79 10.24 3.41 1.89 4.87 6.91 0.00 0.00 0.00 0.00 0.15 0.00 0.00 93.49 46.11 87.40 6.47 9.34 3.45 19 I3_AR1 ActiveIntronRegion 0 2.79 9.83 0.80 1.79 0.00 12.09 1.75 3.40 1.62 3.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.51 35.01 70.16 5.81 2.75 0.00 20 I3_SR2 SilentIntronRegion 0 1.61 17.51 2.50 1.59 1.53 9.10 4.37 1.01 3.57 5.95 0.00 0.00 0.00 0.00 0.39 0.00 0.00 66.91 44.14 68.84 6.29 12.73 6.15 21 I3_AR3 ActiveIntronRegion 0 0.42 26.12 5.64 4.78 0.54 12.68 3.75 2.50 8.65 10.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 160.40 62.69 132.50 8.39 10.73 2.95 22 E4_Aa NovelBoundary 0 3.19 22.30 21.11 6.46 0.00 25.27 4.20 5.09 11.83 9.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 229.11 85.84 158.13 8.65 17.57 21.00 23 ER4a ExonRegion 0 0.79 47.93 47.02 16.60 3.63 42.92 17.17 35.34 37.55 74.19 0.00 0.00 0.00 0.00 1.65 0.00 0.00 538.14 231.20 507.59 53.78 85.14 29.59 24 E4a_E5a KnownJunction 0 0.00 74.92 60.23 17.08 3.82 58.26 15.99 46.54 40.74 84.21 2.68 0.00 0.00 0.00 0.00 0.00 0.00 643.73 222.59 623.70 55.11 78.81 30.13 25 ER5a ExonRegion 0 1.70 50.46 65.75 21.67 4.81 59.63 17.76 44.24 46.11 100.86 0.00 0.00 0.00 1.89 0.11 0.00 0.00 718.36 271.08 564.18 60.30 82.05 45.16 26 E5_Da NovelBoundary 0 2.82 12.10 16.03 1.83 0.00 2.27 0.00 6.08 4.89 7.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 89.79 49.70 164.40 8.09 8.70 4.35 27 E5a_E6a KnownJunction 0 9.33 62.23 52.90 19.41 3.57 45.94 25.22 54.83 54.57 108.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 652.52 314.27 517.86 41.51 117.32 52.50 28 E5a_E7a NovelJunction 0 3.41 12.30 9.20 5.09 0.00 0.00 2.08 5.09 3.41 10.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47.71 26.82 69.99 3.09 5.88 0.00 29 I5 Intron 0 1.05 8.16 5.70 1.81 0.42 5.87 3.54 2.09 4.54 5.42 0.00 0.19 0.00 0.11 0.18 0.00 0.00 87.76 23.22 77.49 4.91 5.68 3.47 30 I5_SR1 SilentIntronRegion 0 0.95 7.74 8.27 0.00 0.00 4.73 4.90 1.12 2.43 4.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64.40 38.59 93.67 4.74 5.74 7.24 31 I5_AR1 ActiveIntronRegion 0 0.52 7.10 6.47 1.99 0.98 6.80 5.15 1.59 4.75 4.12 0.00 0.87 0.00 0.00 0.25 0.00 0.00 77.62 28.47 91.71 5.73 7.62 4.86 32 I5_SR2 SilentIntronRegion 0 1.22 8.51 5.27 1.91 0.29 5.69 2.96 2.32 4.65 5.92 0.00 0.00 0.00 0.14 0.18 0.00 0.00 92.75 20.47 72.11 4.69 5.11 2.76 33 E6_Aa NovelBoundary 0 0.00 2.50 4.44 3.93 0.00 2.44 10.20 0.00 8.04 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 100.32 20.99 60.47 0.00 3.06 12.80 34 ER6a ExonRegion 0 3.75 43.60 55.83 16.95 1.75 32.81 8.51 36.30 40.36 98.69 0.87 0.00 0.00 1.62 1.24 0.00 0.00 533.41 216.34 431.10 44.68 93.06 37.13 35 E6_Da NovelBoundary 0 3.48 11.58 10.64 4.06 3.99 19.19 6.09 7.48 8.59 7.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 322.26 91.96 119.78 17.05 7.90 21.51 36 E6a_E7a KnownJunction 0 3.48 45.98 57.48 20.71 3.06 25.84 0.00 41.16 40.05 89.02 4.95 0.00 0.00 0.00 0.00 0.00 0.00 483.18 172.05 355.38 37.50 58.60 7.60 37 I6 Intron 0 0.62 8.11 6.84 1.38 0.39 8.83 2.70 1.25 4.65 5.57 0.09 0.00 0.00 0.11 0.10 0.00 0.00 125.07 43.36 76.24 4.61 7.29 5.71 38 I6_SR1 SilentIntronRegion 0 0.00 7.54 3.76 1.39 1.61 7.75 2.04 0.00 6.93 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 105.78 32.64 64.66 4.82 8.92 8.46 39 I6_AR1 ActiveIntronRegion 0 1.55 11.86 7.55 2.18 0.00 12.08 4.23 1.42 4.63 3.07 0.00 0.00 0.00 0.42 0.38 0.00 0.00 135.46 50.21 75.41 5.40 9.50 5.49 40 I6_SR2 SilentIntronRegion 0 0.32 6.67 6.95 1.06 0.40 7.66 2.17 1.34 4.39 6.88 0.14 0.00 0.00 0.00 0.00 0.00 0.00 123.60 42.04 78.24 4.27 6.21 5.47 41 E7_Aa NovelBoundary 0 0.00 3.03 8.60 0.00 0.00 5.39 2.08 4.19 7.84 13.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 256.47 64.75 133.84 8.77 2.63 4.35 42 ER7a ExonRegion 0 4.46 46.61 33.09 11.10 4.53 30.68 13.89 18.74 20.26 51.50 0.38 0.00 0.00 0.91 0.19 0.14 0.31 351.66 140.39 269.81 31.69 40.90 18.34