Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZFYVE21 Gene 0 43.85 56.53 47.10 54.43 33.81 32.76 31.09 48.24 28.60 53.36 42.00 21.04 17.52 48.42 47.00 58.67 28.74 56.51 36.06 42.03 69.34 45.75 31.98 2 311141 Transcript 1 71.92 3.87 24.09 13.14 10.14 8.94 14.99 14.92 13.57 15.70 59.54 3.15 32.62 66.40 90.92 48.52 24.60 10.51 10.25 2.11 131.73 54.84 61.09 3 216602 Transcript 0 18.45 52.13 32.78 39.77 30.31 18.69 20.82 41.26 19.53 37.23 5.86 7.25 3.31 7.03 8.08 6.04 2.07 45.19 19.67 32.21 4.01 4.36 5.17 4 392675 Transcript 0 8.15 13.97 16.51 22.07 10.58 14.80 13.86 17.74 9.04 23.58 7.69 6.00 6.35 11.60 8.02 19.72 10.33 37.68 18.29 19.30 12.16 6.07 7.48 5 ER1a ExonRegion 0 23.68 2.67 2.53 1.11 1.00 5.50 3.23 3.13 2.78 7.81 18.85 0.00 4.69 8.12 13.60 15.60 6.19 13.86 6.57 1.73 28.65 6.51 8.99 6 ER1b ExonRegion 1 40.04 20.31 11.44 10.96 6.12 28.01 15.27 14.75 10.03 26.32 55.50 3.11 2.04 32.44 28.49 44.35 20.04 46.74 20.54 19.98 126.01 19.13 27.92 7 E1a_E2a KnownJunction 1 5.85 23.48 13.07 12.62 11.54 7.21 18.55 31.79 13.72 40.35 142.35 6.30 0.00 59.80 37.95 52.64 29.45 21.68 7.15 46.72 256.62 16.41 25.18 8 I1 Intron 0 2.80 6.31 7.63 8.09 4.23 4.45 8.41 6.48 3.29 11.16 3.95 2.75 2.04 9.40 5.82 10.12 5.02 19.03 7.99 8.96 9.68 2.61 4.95 9 I1_SR1 SilentIntronRegion 0 4.05 5.04 7.01 7.66 4.78 3.23 9.09 4.89 2.34 11.37 5.05 4.35 3.49 10.24 6.34 10.25 4.24 18.45 9.04 11.34 10.55 2.46 6.04 10 I1_AR1 ActiveIntronRegion 0 2.56 4.99 6.34 10.90 3.05 7.00 11.62 3.32 2.29 10.30 3.49 3.69 0.86 9.20 7.07 13.50 5.00 20.20 8.76 6.91 11.30 1.16 4.52 11 I1_SR2 SilentIntronRegion 0 1.77 4.24 7.64 5.77 4.32 3.31 6.74 5.96 2.82 6.99 2.56 1.98 1.60 7.99 4.91 9.08 4.92 14.26 8.00 6.19 6.15 2.35 3.45 12 I1_AR2 ActiveIntronRegion 0 0.47 4.36 5.07 5.06 2.53 2.70 5.85 6.01 2.50 10.13 2.91 2.18 1.90 7.47 4.03 8.01 4.64 18.61 4.85 8.72 9.48 2.11 4.35 13 I1_SR3 SilentIntronRegion 0 1.58 13.49 6.97 2.61 2.11 3.95 7.67 5.85 3.59 9.68 3.08 0.00 0.77 8.21 5.52 6.24 5.02 17.98 7.99 5.66 11.40 2.71 6.36 14 I1_AR3 ActiveIntronRegion 0 2.85 17.01 8.14 10.73 6.38 5.71 13.27 9.05 5.20 14.19 8.19 2.74 2.50 9.86 8.88 14.31 6.78 26.81 13.34 8.86 14.66 4.32 6.62 15 I1_SR4 SilentIntronRegion 0 3.16 8.58 8.79 15.42 4.81 8.91 13.17 6.30 3.46 12.61 3.43 1.54 0.00 13.64 6.99 8.41 6.21 19.76 3.43 8.99 14.17 1.82 5.63 16 I1_AR4 ActiveIntronRegion 0 0.45 5.71 8.44 13.29 1.60 7.19 1.40 4.82 2.19 16.54 4.76 3.08 0.00 6.81 8.15 9.32 13.52 21.11 1.35 11.37 13.65 2.20 3.56 17 I1_AR5 ActiveIntronRegion 0 5.62 7.81 9.16 11.50 4.71 6.33 9.18 14.32 5.38 14.51 3.24 3.20 0.78 9.54 5.21 10.97 4.19 25.26 5.15 9.10 13.79 4.60 5.02 18 I1_SR5 SilentIntronRegion 1 2.12 10.17 7.18 26.67 4.20 4.72 20.43 24.20 9.18 27.69 14.08 0.00 9.38 16.24 12.85 24.63 9.90 45.67 12.74 12.77 17.31 13.99 15.52 19 I1_AR6 ActiveIntronRegion 0 2.12 8.85 8.51 23.97 7.71 7.66 19.08 17.39 9.74 25.03 7.39 0.00 9.38 18.82 13.14 24.30 4.47 46.52 8.43 15.02 17.37 4.41 7.43 20 I1_AR7 ActiveIntronRegion 0 0.81 9.39 10.46 15.52 7.20 6.91 14.16 11.57 7.79 23.82 7.29 0.00 7.58 21.49 14.73 17.15 4.06 49.04 8.33 21.28 11.87 4.49 9.49 21 I1_AR8 ActiveIntronRegion 0 1.81 8.28 11.73 12.85 5.35 5.50 6.34 12.35 10.59 29.08 5.52 0.00 1.01 20.53 13.26 16.13 3.30 46.99 14.11 21.73 9.29 4.17 16.99 22 I1_AR9 ActiveIntronRegion 0 2.12 10.34 12.15 12.56 1.86 10.68 5.41 8.87 10.74 28.37 8.40 4.14 4.08 18.78 7.95 14.99 5.45 33.34 17.17 21.28 4.50 7.70 14.17 23 I1_AR10 ActiveIntronRegion 0 2.12 6.61 8.88 9.54 2.68 11.00 5.79 10.15 7.87 24.80 9.91 17.32 9.38 16.44 3.26 15.98 7.01 23.79 15.93 14.36 14.05 6.25 6.97 24 I1_AR11 ActiveIntronRegion 0 0.00 8.13 7.23 11.31 2.68 11.00 6.09 10.37 6.55 22.82 13.53 15.59 9.38 10.72 5.51 17.83 8.58 21.99 10.19 11.28 15.43 6.25 0.00 25 I1_AR12 ActiveIntronRegion 0 0.00 8.57 6.21 12.36 2.29 3.93 6.81 9.38 6.26 17.53 8.28 11.44 2.68 7.19 7.67 13.80 8.25 23.23 6.37 9.27 16.37 2.98 0.42 26 I1_SR6 SilentIntronRegion 0 3.04 7.53 9.65 10.96 3.38 6.83 7.45 7.03 4.83 18.02 4.12 1.40 1.55 10.70 5.46 10.28 6.04 23.66 7.05 12.27 9.58 2.40 5.22 27 E2_Aa NovelBoundary 0 0.00 6.51 14.28 11.65 12.90 24.99 6.54 12.12 3.04 8.60 5.26 6.15 0.00 14.72 9.89 19.91 0.00 22.14 7.72 8.25 13.41 4.84 8.71 28 ER2a ExonRegion 1 17.68 20.14 24.87 30.17 24.29 10.14 9.11 39.04 24.24 61.69 90.58 6.37 12.78 92.93 102.06 94.41 34.30 50.29 42.91 54.78 215.83 59.81 53.67 29 E2_Da NovelBoundary 0 0.00 12.23 1.33 0.00 3.65 10.05 4.06 9.36 1.62 6.88 4.53 0.00 0.00 4.24 4.45 16.66 3.65 36.64 0.00 8.88 5.07 0.00 8.37 30 E2a_E3b KnownJunction 0 26.67 39.14 45.47 50.84 27.67 7.27 5.79 35.04 26.68 66.70 55.44 5.70 13.64 110.31 115.58 128.26 58.72 74.62 46.02 58.74 147.96 100.61 104.83 31 E3_Aa NovelBoundary 0 3.70 11.12 6.09 16.25 6.62 2.90 4.50 2.22 1.71 6.90 0.00 6.30 0.00 9.89 0.00 7.78 0.00 19.28 3.67 3.07 5.56 2.94 0.00 32 ER3a ExonRegion 0 3.53 7.49 11.18 16.72 2.90 3.50 4.37 7.82 2.09 13.70 1.27 4.05 2.75 7.50 7.04 9.63 4.73 22.17 4.65 9.48 9.29 3.23 5.35 33 E3_Ab KnownBoundary 0 3.63 21.84 16.38 3.23 6.79 14.93 20.67 12.28 1.27 17.03 2.26 0.00 0.00 21.54 13.35 7.35 0.00 49.50 9.60 7.67 5.25 8.02 11.35 34 ER3b ExonRegion 0 27.49 34.18 55.30 62.68 34.04 33.27 22.64 52.39 36.11 82.52 73.78 22.11 15.80 98.40 105.46 114.87 55.35 88.77 38.15 61.21 194.14 72.07 73.22 35 E3_Da NovelBoundary 0 0.00 0.00 23.95 3.26 12.65 7.50 5.96 5.96 2.75 30.73 2.68 0.00 0.00 4.89 4.45 0.00 18.70 50.90 8.38 24.03 5.31 0.00 0.00 36 E3a_E4a KnownJunction 0 61.42 58.48 84.33 100.45 60.78 51.22 59.27 59.23 46.59 83.03 115.82 69.47 79.22 130.50 98.89 124.33 44.51 74.12 23.34 47.30 256.62 93.32 78.28 37 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 I3 Intron 0 4.78 16.71 20.26 19.09 7.15 11.40 12.24 12.17 12.48 23.00 5.26 3.26 3.66 8.65 5.09 12.36 6.10 37.50 9.98 17.05 8.93 4.82 2.56 39 I3_AR1 ActiveIntronRegion 0 2.48 9.12 11.06 9.56 1.72 8.60 6.21 9.24 6.49 15.54 2.24 2.27 1.46 5.23 4.98 9.71 5.89 23.59 7.34 11.14 6.39 6.06 1.69 40 I3_SR1 SilentIntronRegion 0 5.09 16.21 13.18 6.23 8.82 13.93 9.27 9.44 8.98 20.58 4.44 0.00 3.68 4.52 10.59 2.73 10.62 39.15 0.00 12.42 9.47 7.55 2.30 41 I3_AR2 ActiveIntronRegion 0 3.12 11.62 19.78 14.96 6.36 9.75 8.60 10.03 13.53 21.43 2.06 2.14 0.90 9.16 6.01 11.88 4.56 32.18 5.96 15.21 10.56 4.19 3.22 42 I3_AR3 ActiveIntronRegion 0 4.23 16.44 18.79 15.45 18.28 13.14 16.11 19.88 14.62 29.92 1.29 4.33 0.00 9.34 0.00 16.59 4.68 39.42 11.15 21.63 12.85 1.39 0.00 43 I3_SR2 SilentIntronRegion 0 7.57 29.00 27.51 36.07 12.83 17.43 21.02 19.13 16.65 33.66 11.89 6.88 7.89 10.75 3.82 15.37 8.16 57.51 16.05 24.85 8.63 5.25 2.42 44 I3_AR4 ActiveIntronRegion 0 9.50 25.90 25.75 23.79 6.74 10.49 20.12 12.70 11.44 21.93 10.81 3.54 10.12 9.57 3.02 15.60 7.37 43.09 21.24 20.34 6.85 4.13 2.09 45 E4_Aa NovelBoundary 0 18.30 36.84 17.77 62.63 18.76 29.98 29.28 23.58 10.04 32.31 11.95 6.30 0.00 9.77 6.18 33.75 9.07 43.32 20.89 20.33 3.15 3.12 0.00 46 ER4a ExonRegion 0 112.62 79.20 103.50 109.12 58.23 72.27 50.47 100.71 58.12 111.90 146.70 47.57 57.21 172.26 131.09 157.13 69.84 104.54 52.14 77.24 258.50 117.20 95.44 47 E4a_E5a KnownJunction 0 260.86 104.78 146.45 144.64 78.35 56.50 71.28 124.17 77.81 139.79 126.30 56.12 66.39 187.24 190.49 204.99 74.33 120.55 71.06 83.92 270.89 148.25 147.42 48 E5_Aa NovelBoundary 0 3.70 22.82 7.01 23.14 3.99 8.23 9.54 7.85 2.34 8.52 2.11 0.00 0.00 12.07 0.00 7.86 9.35 9.66 14.40 8.37 0.00 0.00 0.00 49 ER5a ExonRegion 1 128.10 75.99 118.12 150.66 64.22 67.89 74.17 110.04 70.40 127.94 118.89 24.14 42.31 146.75 154.87 147.86 63.26 117.25 89.67 98.06 270.70 118.42 95.03 50 E5_Da KnownBoundary 0 51.19 53.02 47.37 82.97 62.56 56.44 78.96 43.74 14.84 36.05 10.16 5.55 6.82 22.60 17.80 25.04 30.01 81.83 52.52 39.63 28.42 14.82 7.68 51 E5a_E5b KnownJunction 0 6.15 64.46 48.02 59.40 31.58 25.04 19.43 53.64 32.61 43.22 10.37 12.60 6.82 2.47 5.19 7.52 0.00 63.05 35.11 59.63 9.08 3.12 3.76 52 E5a_E6a KnownJunction 1 120.17 5.06 45.65 25.17 19.27 12.38 26.76 26.70 24.36 23.58 100.24 6.30 60.55 124.67 168.24 81.43 43.01 7.17 13.93 2.49 234.82 103.18 113.19 53 ER5b ExonRegion 0 12.91 31.42 31.01 52.18 26.46 38.93 32.41 39.45 18.21 56.13 16.30 13.07 13.26 22.87 12.30 41.44 18.96 87.88 45.97 41.34 24.25 12.41 12.08 54 E5_Ab KnownBoundary 1 37.04 23.35 22.47 48.05 23.01 23.57 23.85 21.73 8.07 23.16 14.53 29.11 7.47 24.55 4.45 35.89 0.00 44.31 24.47 50.43 14.70 5.51 23.65 55 ER5c ExonRegion 0 18.25 57.78 53.41 70.97 28.78 31.56 28.73 57.92 33.98 65.74 12.22 16.99 5.04 18.72 11.71 39.76 11.09 95.80 54.69 60.90 10.06 6.53 9.09 56 E5_Db KnownBoundary 0 3.78 3.09 17.95 21.84 3.99 10.51 7.91 21.36 4.02 23.80 7.58 0.00 0.00 12.18 14.83 31.02 4.58 38.10 23.34 15.15 2.41 2.63 7.43 57 E5b_E6a KnownJunction 0 3.11 46.04 43.26 51.44 45.67 28.79 26.10 55.16 23.09 57.14 4.42 6.75 0.00 7.24 11.00 3.33 3.65 71.30 21.08 32.28 0.00 0.00 0.00 58 ER5d ExonRegion 0 16.17 16.96 23.84 19.37 12.94 16.75 18.68 23.69 15.85 24.50 13.17 6.87 9.37 16.03 12.75 27.79 17.63 40.67 22.54 26.35 15.12 8.63 12.49 59 E5_Dc NovelBoundary 0 21.19 23.15 10.23 13.05 14.01 7.95 30.47 16.43 19.97 16.76 24.48 6.45 12.17 5.30 16.81 26.40 3.55 16.37 17.04 21.80 25.21 8.63 7.51 60 I5 Intron 0 8.31 9.13 20.02 10.98 9.69 12.25 8.44 16.68 10.33 20.40 10.15 1.94 1.42 10.46 10.74 21.07 6.40 35.60 9.91 18.88 12.70 7.54 5.99 61 I5_AR1 ActiveIntronRegion 0 8.32 9.14 20.04 10.99 9.70 12.26 8.45 16.70 10.34 20.42 10.16 1.94 1.42 10.47 10.75 21.09 6.41 35.63 9.92 18.90 12.71 7.55 6.00 62 E6_Aa NovelBoundary 0 33.71 19.27 21.79 22.94 15.62 7.89 14.44 13.80 9.09 22.13 12.48 5.85 0.00 8.95 0.00 3.76 4.58 43.07 8.47 19.88 8.28 5.08 3.93 63 ER6a ExonRegion 0 83.03 67.89 71.24 70.45 43.90 61.62 39.34 59.37 55.49 75.90 80.22 29.43 26.96 140.54 120.94 97.48 56.44 82.64 42.90 69.04 221.13 94.91 88.08 64 E6a_E7a KnownJunction 0 83.72 78.93 79.98 97.76 81.58 75.47 41.65 66.13 69.36 84.02 58.86 6.30 20.13 127.85 146.86 136.29 68.72 82.16 49.41 69.73 213.38 94.36 79.99 65 E7_Aa NovelBoundary 0 3.19 11.05 7.16 1.47 3.57 16.69 5.92 13.23 0.00 2.74 2.68 0.00 6.82 10.01 16.44 7.69 4.58 1.87 9.60 3.00 0.00 2.76 0.00 66 ER7a ExonRegion 0 136.64 204.46 120.10 143.49 102.72 66.19 69.47 123.25 68.19 113.83 109.49 69.99 43.05 110.74 126.58 126.92 56.30 54.65 64.38 75.89 134.94 156.81 71.71 67 ER7b ExonRegion 0 46.09 45.87 7.08 8.48 13.68 2.24 16.92 14.98 2.88 11.34 2.79 2.41 3.13 11.37 8.06 7.27 2.57 1.23 2.83 4.73 2.94 9.95 11.75