Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KIAA0284 Gene 0 7.96 37.01 66.67 44.07 19.00 77.81 19.83 82.01 54.93 126.31 0.79 0.85 2.61 4.77 7.03 1.14 1.83 119.32 17.16 64.32 84.69 64.90 65.82 2 453495 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.59 3 418279 Transcript 0 0.00 0.00 1.83 0.00 0.00 8.63 0.00 5.09 0.00 2.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.00 0.00 2.72 0.00 0.00 4 414716 Transcript 0 0.00 2.03 0.00 1.36 0.00 3.67 0.00 0.00 1.24 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 251181 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 429757 Transcript 0 5.35 20.44 29.16 12.71 12.52 25.87 9.22 25.94 12.87 39.22 0.03 0.00 0.00 2.53 3.35 0.10 0.11 38.43 6.93 33.28 28.37 29.07 30.04 7 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.59 8 ER1b ExonRegion 0 0.55 1.36 3.10 2.49 1.43 7.48 2.13 8.21 9.41 15.73 0.06 0.00 0.36 0.49 1.81 0.77 0.00 12.58 2.58 10.27 18.61 6.32 13.66 9 E1a_E2a KnownJunction 0 0.00 5.59 18.48 11.69 0.00 19.59 10.42 26.21 24.57 52.25 0.00 0.00 6.82 2.47 8.90 0.00 0.00 46.10 8.47 52.80 77.53 20.33 52.16 10 E1a_E3a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 8.63 0.00 5.09 0.00 2.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.00 0.00 2.72 0.00 0.00 11 ER2a ExonRegion 0 0.82 8.33 24.59 14.70 3.04 29.84 6.69 25.19 38.55 73.85 1.96 0.00 4.65 1.23 5.56 0.00 0.00 58.60 7.17 43.08 74.71 34.24 40.02 12 E2a_E3a KnownJunction 0 0.00 24.80 54.94 19.98 0.00 38.44 1.99 43.13 51.56 109.65 2.32 0.00 6.82 2.35 0.00 0.00 0.00 82.16 13.84 37.46 98.41 43.78 51.56 13 I2 Intron 0 1.33 3.75 6.09 4.59 3.92 6.42 6.36 15.34 8.65 23.27 0.18 0.12 0.37 1.07 1.89 0.17 0.28 33.01 5.63 22.13 18.51 10.43 18.74 14 I2_SR1 SilentIntronRegion 0 2.65 4.84 6.95 4.14 3.35 6.34 8.02 19.20 9.02 27.15 0.11 0.10 0.58 0.83 2.27 0.33 0.00 37.98 8.89 27.52 23.16 13.07 21.85 15 I2_AR1 ActiveIntronRegion 0 0.00 1.93 7.31 6.82 1.32 5.83 3.88 14.33 6.50 29.59 0.00 0.00 0.46 0.98 1.43 0.00 0.00 29.58 8.82 19.18 15.25 9.13 22.05 16 I2_AR2 ActiveIntronRegion 0 0.20 2.98 2.42 4.46 5.61 7.05 4.94 10.28 2.82 8.92 0.20 0.00 0.00 1.04 1.47 0.00 0.00 17.72 6.63 10.10 9.85 5.98 15.27 17 I2_SR3 SilentIntronRegion 0 0.69 3.25 6.66 6.37 4.84 6.54 5.94 16.18 10.62 24.04 0.49 0.00 0.12 0.98 1.40 0.19 0.72 34.62 3.63 21.29 18.32 9.85 19.64 18 I2_AR3 ActiveIntronRegion 0 2.12 6.10 11.95 4.09 5.57 5.50 10.59 10.23 15.64 24.85 0.00 0.00 0.00 2.03 5.56 0.00 1.38 48.81 0.00 33.16 11.94 21.53 28.14 19 I2_AR4 ActiveIntronRegion 0 0.49 3.87 8.44 3.88 6.64 7.76 4.43 14.59 14.35 24.79 0.00 0.00 0.00 0.00 3.57 0.00 1.33 29.92 0.00 27.21 15.17 18.35 21.29 20 I2_AR5 ActiveIntronRegion 0 1.23 4.69 7.61 7.85 5.18 8.32 9.18 14.59 9.62 32.54 0.00 0.00 0.00 2.45 1.86 0.00 0.30 33.94 0.51 27.51 21.60 14.42 20.68 21 I2_SR4 SilentIntronRegion 0 1.73 2.35 6.18 2.38 1.71 7.75 5.03 18.83 8.80 26.38 0.00 0.00 0.00 2.95 2.44 0.00 1.24 38.65 3.28 22.52 19.93 11.91 14.14 22 I2_AR6 ActiveIntronRegion 0 0.00 0.00 2.36 4.09 5.45 5.29 4.18 18.95 12.73 26.56 0.00 0.00 0.00 3.06 1.00 0.00 0.00 47.33 6.37 19.15 23.65 8.17 22.59 23 I2_AR7 ActiveIntronRegion 0 1.68 4.84 9.34 2.75 4.56 6.60 6.52 14.17 10.90 28.79 0.00 0.47 1.53 1.13 0.70 0.39 0.00 41.26 6.93 31.98 17.29 14.15 20.59 24 E3_Aa NovelBoundary 0 3.78 2.96 22.50 21.94 0.00 20.73 14.35 35.61 13.45 41.50 0.00 0.00 0.00 0.00 4.57 0.00 0.00 69.85 42.17 39.50 34.90 17.76 36.11 25 ER3a ExonRegion 0 1.20 17.26 58.48 33.51 11.57 47.17 13.50 72.48 73.53 122.34 0.28 2.60 3.96 3.52 0.23 2.48 0.11 162.54 15.50 92.81 131.88 70.65 80.33 26 E3_Da NovelBoundary 0 0.00 2.89 10.70 7.82 0.00 2.27 0.00 7.89 4.63 32.69 0.00 0.00 6.33 0.00 4.94 0.00 0.00 37.18 0.00 20.71 10.87 36.68 8.62 27 E3a_E4a KnownJunction 0 0.00 21.05 74.69 48.11 3.99 78.99 20.62 126.22 104.11 151.58 0.00 6.30 6.82 5.36 4.33 4.36 0.00 232.30 19.67 139.85 130.60 103.06 132.23 28 I3 Intron 0 0.90 6.73 13.02 6.20 2.95 11.52 2.30 7.87 6.01 26.03 0.00 0.00 0.66 0.54 1.07 0.25 0.28 23.85 3.78 10.74 9.91 17.70 9.97 29 I3_SR1 SilentIntronRegion 0 0.93 6.97 13.48 6.42 3.06 11.92 2.38 8.15 6.22 26.95 0.00 0.00 0.68 0.55 1.11 0.26 0.29 24.69 3.92 11.12 10.26 18.33 10.32 30 E4_Ab NovelBoundary 0 7.19 8.88 57.54 40.22 12.05 33.96 20.23 75.86 66.84 138.37 4.53 0.00 0.00 4.41 4.45 4.02 4.39 147.08 16.94 104.12 79.14 65.03 60.44 31 ER4a ExonRegion 0 0.13 13.98 67.70 44.29 4.85 52.72 17.79 107.27 99.43 150.67 3.62 4.33 4.69 5.99 4.35 7.99 3.30 204.52 18.91 137.77 130.16 96.75 104.98 32 ER4b ExonRegion 0 2.89 11.85 68.62 51.59 8.24 70.32 13.98 111.94 106.61 185.00 4.69 3.85 4.17 2.29 9.90 4.06 1.68 232.61 36.76 132.18 147.89 100.90 95.09 33 E4a_E5a KnownJunction 0 0.00 8.49 31.16 24.24 11.12 31.52 5.52 53.72 52.26 79.54 2.68 0.00 0.00 0.00 0.00 0.00 0.00 97.50 0.00 35.41 61.22 44.03 35.60 34 E4b_E5b KnownJunction 0 2.96 14.14 25.34 17.51 8.49 29.59 5.92 33.64 27.26 52.84 0.00 0.00 0.00 2.35 0.00 0.00 0.00 56.71 38.12 70.82 27.61 35.39 34.74 35 ER4c ExonRegion 0 4.23 12.20 32.47 26.58 10.70 33.01 3.31 44.94 51.87 82.58 0.00 0.00 0.00 0.00 5.80 0.00 0.00 121.03 12.74 68.08 61.70 46.88 69.01 36 ER5a ExonRegion 0 1.41 12.88 44.93 39.07 10.70 59.29 15.45 80.66 61.34 129.98 1.93 0.00 0.00 4.87 0.97 0.00 0.00 168.76 26.54 80.14 105.78 70.15 48.94 37 ER5b ExonRegion 0 3.36 33.92 70.81 48.31 15.15 71.91 25.13 106.52 89.44 170.93 1.86 0.00 2.85 8.29 5.91 0.00 3.24 192.83 37.03 115.27 141.59 98.74 96.86 38 E5a_E6a KnownJunction 0 10.30 44.40 86.75 47.31 14.09 86.37 28.66 120.43 93.55 179.81 5.00 0.00 6.33 7.06 4.45 0.00 9.54 176.18 21.37 103.10 117.62 81.44 127.87 39 ER6a ExonRegion 0 7.03 26.09 79.63 53.31 20.23 83.89 25.45 106.58 88.38 178.84 2.28 1.31 1.86 8.19 9.33 2.18 4.20 238.88 33.62 126.42 124.45 103.80 120.72 40 E6a_E7a KnownJunction 0 7.19 48.81 97.93 58.87 24.79 90.69 52.64 110.45 86.72 227.09 5.37 0.00 0.00 12.48 19.04 0.00 4.77 302.82 39.62 125.21 117.87 188.54 140.76 41 ER7a ExonRegion 0 7.28 29.23 60.57 38.82 19.93 91.59 26.24 84.27 74.27 161.45 2.89 0.00 5.81 10.05 6.11 3.71 5.16 194.95 25.03 79.49 114.49 105.01 95.43 42 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 E7a_E8b KnownJunction 0 6.74 25.32 51.42 36.19 23.26 67.23 13.43 66.75 60.94 141.99 0.00 0.00 0.00 7.36 0.00 7.43 4.02 136.55 22.78 105.91 78.70 46.54 84.85 44 ER8a ExonRegion 0 0.53 4.58 12.87 7.50 3.34 22.92 3.31 15.56 15.75 30.97 0.00 0.00 0.00 2.44 0.73 1.49 0.83 41.11 4.78 27.13 22.04 13.54 25.70 45 ER8b ExonRegion 0 4.94 26.60 49.79 33.60 15.83 70.02 20.97 67.16 55.21 121.54 1.77 2.31 4.39 7.13 11.43 1.09 3.63 141.34 15.05 70.10 102.47 73.93 81.64 46 E8a_E9a KnownJunction 0 9.71 37.89 81.46 58.10 11.54 58.60 15.46 75.58 67.22 192.55 4.53 0.00 27.27 4.30 22.87 0.00 9.44 193.88 30.49 107.76 119.91 106.91 118.83 47 ER9a ExonRegion 0 3.85 14.91 36.85 17.56 8.87 50.45 9.78 52.57 32.47 98.88 1.26 1.88 2.34 4.48 8.17 0.34 1.88 83.38 10.65 43.67 72.35 44.63 49.39 48 E9a_E10a KnownJunction 0 0.00 17.96 31.55 22.77 14.43 50.94 12.28 62.15 43.89 89.56 2.53 0.00 0.00 4.94 0.00 4.36 0.00 101.98 12.89 34.52 86.67 42.62 40.29 49 ER10a ExonRegion 0 3.07 19.16 38.85 26.96 7.98 53.63 13.08 57.78 41.09 112.11 0.76 0.00 2.26 4.98 5.42 1.21 0.97 84.42 13.44 67.33 95.56 55.32 54.40 50 E10a_E11a KnownJunction 0 0.00 3.29 43.61 24.21 4.33 54.85 5.74 74.34 50.43 124.69 0.00 10.80 0.00 2.12 8.90 0.00 0.00 113.50 8.47 67.75 77.47 46.17 88.18 51 ER11a ExonRegion 0 0.28 5.39 36.84 21.46 18.85 47.36 15.06 57.95 40.92 113.87 0.00 0.00 2.16 1.70 3.76 3.33 0.00 91.80 8.96 46.88 80.21 51.93 65.93 52 E11a_E12a KnownJunction 0 3.19 23.88 43.32 26.10 28.78 83.19 8.66 52.08 62.38 132.81 0.00 0.00 13.64 4.59 4.82 0.00 0.00 101.93 4.61 59.06 76.05 34.11 56.77 53 ER12a ExonRegion 0 5.58 26.61 64.22 34.95 12.58 69.90 15.97 84.02 57.09 143.20 0.58 1.16 2.11 4.72 7.29 0.71 1.58 130.10 20.10 61.80 102.02 64.59 62.63 54 E12_Da NovelBoundary 0 0.00 3.35 17.09 11.05 0.00 23.96 0.00 14.95 0.00 27.35 0.00 0.00 0.00 0.00 4.45 0.00 0.00 33.62 3.67 8.37 5.62 9.06 12.72 55 E12a_E13b KnownJunction 0 3.70 27.43 63.92 23.61 11.04 114.71 18.28 92.38 77.72 112.90 0.00 0.00 0.00 0.00 4.33 0.00 0.00 96.67 4.42 25.31 67.09 34.66 82.72 56 E12a_E13c KnownJunction 0 2.74 6.45 5.82 1.96 0.00 2.16 0.00 6.78 1.27 12.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.89 0.00 3.00 37.56 2.45 3.93 57 E13_Aa NovelBoundary 0 0.00 22.43 27.47 7.86 0.00 2.90 0.00 17.05 5.38 42.82 0.00 0.00 0.00 2.77 0.00 0.00 0.00 38.30 4.61 28.25 11.55 2.45 22.54 58 ER13a ExonRegion 0 2.47 14.10 27.68 11.87 6.20 18.13 8.81 21.48 11.83 40.68 0.07 0.00 0.00 0.83 2.25 0.21 0.23 58.45 6.89 31.15 9.36 17.54 19.28 59 E13_Ab KnownBoundary 0 9.41 17.56 31.25 3.40 14.43 46.68 13.25 23.78 14.38 52.19 0.00 0.00 0.00 0.00 5.56 0.00 0.00 81.00 7.44 35.60 5.62 17.21 45.16 60 ER13b ExonRegion 0 14.07 54.58 76.29 32.53 18.96 114.66 26.77 81.50 55.49 130.71 0.00 0.00 0.00 3.88 4.78 1.44 1.63 119.07 12.92 45.03 74.49 71.24 71.37 61 E13_Ac KnownBoundary 0 12.52 66.30 70.34 26.80 19.86 94.49 28.48 71.30 32.03 98.42 0.00 0.00 0.00 2.47 0.00 0.00 0.00 84.36 0.00 50.56 38.36 25.41 28.85 62 ER13c ExonRegion 0 7.22 45.05 112.21 60.30 31.86 139.05 31.42 124.35 73.53 176.25 1.20 1.32 6.32 4.77 11.79 0.00 2.46 166.19 24.44 71.89 114.42 76.12 91.16 63 E13a_E14a KnownJunction 0 10.22 92.35 153.66 99.69 24.11 115.90 45.71 194.32 116.43 228.41 4.74 0.00 14.45 4.71 13.35 0.00 9.54 295.85 52.52 144.39 111.82 85.67 131.63 64 ER14a ExonRegion 0 10.20 53.42 133.53 74.93 29.62 117.98 28.52 124.52 82.27 201.06 1.84 1.14 4.31 5.00 14.07 0.00 3.69 185.16 16.98 100.31 122.13 86.45 91.46 65 E14a_E15a KnownJunction 0 20.82 91.83 128.88 89.63 46.77 171.44 38.73 136.00 98.93 189.59 2.53 0.00 21.91 6.77 8.90 0.00 4.77 217.05 38.78 133.97 123.00 112.06 127.36 66 ER15a ExonRegion 0 18.84 83.22 154.58 99.15 52.68 202.99 34.41 153.10 107.37 220.01 0.31 0.69 6.45 11.93 12.89 1.05 4.58 209.76 33.91 128.34 137.17 96.20 123.38 67 E15a_E16a KnownJunction 0 18.74 121.29 199.17 135.68 51.36 169.33 27.95 194.32 139.44 244.60 0.00 7.65 0.00 11.95 14.59 0.00 4.77 222.52 35.48 142.47 105.58 94.42 146.65 68 ER16a ExonRegion 0 21.40 80.00 189.67 149.40 47.59 158.37 34.45 218.58 150.50 261.93 1.39 2.43 10.07 11.04 14.08 3.21 2.89 252.58 29.96 160.82 167.36 117.10 146.87 69 E16a_E17a KnownJunction 0 46.30 109.91 195.38 170.84 70.20 185.40 48.27 261.81 141.61 294.14 2.63 6.30 12.99 12.18 5.93 3.16 0.00 249.76 45.74 146.56 194.35 110.22 91.94 70 I16 Intron 0 0.74 3.81 18.41 10.00 3.45 8.81 2.79 16.01 5.83 22.64 0.00 0.00 0.00 1.16 0.24 0.00 0.00 15.40 0.37 7.73 3.62 7.57 14.47 71 I16_AR1 ActiveIntronRegion 0 0.75 3.83 18.50 10.05 3.47 8.86 2.81 16.08 5.85 22.75 0.00 0.00 0.00 1.17 0.24 0.00 0.00 15.46 0.38 7.77 3.63 7.61 14.53 72 E17_Aa NovelBoundary 0 0.00 9.14 29.18 10.99 0.00 10.56 1.68 11.42 6.19 8.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 2.88 2.90 5.57 16.48 73 ER17a ExonRegion 0 28.12 86.82 201.66 169.58 67.01 207.02 44.70 237.90 164.05 312.09 0.66 4.79 7.78 16.05 12.35 3.67 0.70 283.12 42.90 153.78 195.31 133.28 124.65 74 E17a_E18a KnownJunction 0 35.19 160.23 225.98 188.39 107.73 303.23 69.16 235.40 187.15 359.39 0.00 0.00 19.64 7.18 9.39 3.33 4.77 326.74 52.14 179.67 201.64 162.15 162.45 75 ER18a ExonRegion 0 30.00 126.86 201.50 165.46 64.06 276.83 62.76 241.02 168.64 321.73 0.00 0.00 2.98 13.24 9.43 9.72 4.13 311.38 34.43 138.42 195.92 193.57 160.33 76 E18a_E19a KnownJunction 0 23.41 129.58 191.68 190.19 102.97 334.41 102.94 267.52 143.81 280.55 0.00 0.00 0.00 16.72 10.75 19.14 4.49 241.26 45.55 134.67 220.48 205.44 153.06 77 ER19a ExonRegion 0 22.28 87.60 164.68 156.55 61.33 246.84 68.01 252.90 136.32 274.96 0.00 0.00 9.38 13.42 20.61 6.02 1.48 205.73 42.42 123.18 170.15 165.64 133.54 78 E19_Da KnownBoundary 0 21.56 90.58 174.15 164.05 64.35 251.67 53.04 253.18 143.75 280.92 0.00 0.00 0.00 14.19 24.11 0.00 0.00 190.64 47.34 117.35 157.16 141.08 121.73 79 E19a_E19b KnownJunction 0 8.22 26.77 30.63 13.55 18.85 33.62 9.63 30.39 13.92 37.77 0.00 0.00 0.00 4.24 4.45 0.00 0.00 18.41 6.96 35.41 47.38 40.60 40.80 80 ER19b ExonRegion 0 16.37 76.54 98.46 75.20 35.12 128.38 33.77 123.44 75.32 163.11 0.81 0.30 3.32 6.31 8.24 1.88 2.64 136.75 22.13 79.80 108.09 95.15 91.85 81 E19_Ab KnownBoundary 0 5.56 24.40 49.82 96.39 10.87 57.81 16.69 119.40 67.79 140.60 0.00 0.00 0.00 0.00 8.90 4.10 3.93 62.68 23.62 70.69 53.68 110.16 114.05 82 ER19c ExonRegion 0 4.47 17.35 42.99 62.63 8.34 24.93 5.56 84.55 51.33 95.25 0.08 1.20 3.89 2.61 5.57 0.65 1.24 33.45 14.19 38.94 37.72 63.97 42.68 83 E19_Db KnownBoundary 0 6.22 66.11 65.08 94.86 50.08 72.46 7.64 96.65 49.94 119.80 0.00 0.00 0.00 0.00 0.00 0.00 4.58 34.28 9.41 31.13 14.52 61.72 26.21 84 ER19d ExonRegion 0 13.83 47.47 27.80 37.50 46.60 53.58 7.17 31.37 22.32 46.55 0.00 0.00 0.00 0.08 2.19 0.00 2.66 23.03 3.03 26.36 8.01 44.77 32.73 85 ER19e ExonRegion 0 9.00 9.66 1.99 9.71 11.04 10.54 2.98 1.08 5.71 6.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.47 0.00 7.18 2.20 5.21 12.48 86 ER19f ExonRegion 0 0.00 2.03 0.00 1.36 0.00 3.67 0.00 0.00 1.24 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 87 IG4_AR2 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.81 28.31 3.25 5.39 11.46 3.77 0.00 0.00 0.00 0.00 0.00 0.00