Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PPP1R13B Gene 0 48.56 52.29 67.46 45.10 41.80 70.21 37.23 94.31 49.92 122.53 47.05 16.60 29.93 49.97 30.29 47.04 36.80 108.04 84.22 71.20 10.33 22.29 18.51 2 380023 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 202556 Transcript 0 66.05 44.76 69.83 47.85 38.01 68.90 32.98 91.64 48.76 120.57 43.62 6.79 18.13 47.09 36.76 38.22 25.27 118.72 96.17 99.20 8.14 12.93 15.75 4 423488 Transcript 0 6.82 8.62 1.51 0.00 0.00 0.00 0.00 1.81 3.21 3.20 0.00 0.00 0.00 0.00 0.00 0.00 4.77 5.55 4.14 3.26 0.00 0.00 0.00 5 ER1a ExonRegion 0 0.60 3.75 3.07 2.75 1.04 3.23 1.93 1.88 3.32 7.37 2.67 0.10 0.32 3.51 3.91 4.30 5.06 5.67 13.59 8.97 1.40 1.26 3.41 6 E1a_E2a KnownJunction 0 3.78 11.12 16.03 16.38 25.98 21.64 4.50 15.12 12.27 36.26 15.79 5.70 8.28 23.49 9.27 25.04 24.22 40.91 22.97 27.29 5.62 3.12 20.06 7 I1_AR4 ActiveIntronRegion 0 12.86 15.29 8.28 13.19 1.15 3.91 8.27 16.09 5.41 13.60 0.00 0.51 2.25 0.00 0.98 3.01 4.33 2.16 5.09 5.75 0.00 0.00 0.00 8 I1_AR5 ActiveIntronRegion 0 6.31 11.75 7.83 12.05 15.74 2.82 10.81 15.88 4.61 12.79 0.84 7.62 9.48 2.28 1.83 12.92 3.91 10.03 7.32 9.78 0.00 1.83 4.51 9 I1_AR7 ActiveIntronRegion 0 4.54 11.62 0.88 2.73 14.53 9.17 23.07 0.00 1.24 4.26 0.00 0.00 4.69 0.00 2.90 2.97 0.00 1.85 0.91 6.38 0.00 0.00 0.00 10 ER2a ExonRegion 0 19.63 37.11 38.14 35.32 24.08 28.73 29.82 49.87 35.09 72.36 34.79 17.49 14.32 40.38 13.90 33.22 31.31 52.52 58.99 77.95 9.13 12.84 18.53 11 E2a_E3a KnownJunction 0 24.08 57.62 58.10 42.09 44.91 37.19 22.96 53.44 42.36 72.29 42.22 18.61 0.00 41.79 35.60 23.24 29.55 70.22 75.30 81.43 8.40 16.72 23.65 12 E3_Aa NovelBoundary 0 6.37 0.00 2.96 1.56 0.00 0.00 19.03 4.31 1.19 2.71 0.00 0.00 5.68 0.00 4.45 3.76 0.00 0.00 0.00 3.26 0.00 0.00 0.00 13 ER3a ExonRegion 0 24.34 45.89 46.59 40.13 34.03 41.81 36.44 72.72 45.60 103.81 52.11 32.07 41.27 58.04 27.18 43.42 42.77 92.13 76.42 81.93 13.44 16.75 23.81 14 E3a_E4a KnownJunction 0 35.27 44.86 72.44 35.59 43.29 103.41 24.51 87.28 62.70 119.03 54.59 36.91 66.07 71.16 39.31 64.85 49.46 120.09 92.80 103.67 19.95 10.90 20.66 15 ER4a ExonRegion 0 37.77 66.87 51.47 33.98 35.20 57.13 43.86 82.56 54.31 110.10 64.09 40.26 50.43 65.01 34.48 62.07 40.25 113.72 90.93 83.86 18.52 20.10 24.03 16 E4_Da NovelBoundary 0 6.67 9.67 17.44 22.84 23.01 2.33 13.25 6.45 5.96 14.99 0.00 13.80 6.17 0.00 0.00 4.10 13.93 8.46 12.14 6.52 0.00 0.00 8.54 17 E4a_E5a KnownJunction 0 43.93 136.42 37.91 48.51 40.24 53.15 62.40 77.75 41.93 123.65 69.23 18.91 66.23 66.93 34.86 56.65 47.78 88.34 113.98 68.77 19.89 19.53 21.00 18 E5_Aa NovelBoundary 0 13.93 15.92 8.96 12.29 20.71 0.00 16.12 24.89 9.52 7.63 0.00 0.00 7.30 0.00 4.45 4.02 0.00 12.60 4.42 23.71 0.00 2.63 8.62 19 ER5a ExonRegion 0 23.36 56.02 29.83 23.37 37.67 54.33 60.80 55.58 41.78 83.45 54.25 20.67 52.28 57.13 29.95 43.39 39.58 77.32 62.86 63.37 10.69 10.42 8.78 20 E5_Da NovelBoundary 0 6.37 40.58 14.87 14.55 12.14 7.95 37.19 20.04 15.28 13.78 7.63 0.00 13.64 9.42 9.39 8.03 0.00 26.78 14.21 26.65 0.00 2.63 6.66 21 E5a_E6a KnownJunction 1 23.63 45.85 44.35 26.40 45.93 71.89 80.11 68.84 51.01 120.31 67.33 10.95 68.66 66.16 41.41 38.88 35.06 77.64 62.12 64.49 8.40 13.53 3.93 22 I5 Intron 0 9.39 17.39 8.50 10.73 16.47 7.24 15.07 18.31 8.12 9.91 2.05 3.27 5.08 2.92 2.50 3.97 2.43 5.48 10.32 12.57 0.66 3.23 2.00 23 I5_SR1 SilentIntronRegion 0 11.60 20.38 10.56 11.19 16.37 8.06 18.01 22.39 7.70 12.26 2.48 4.10 5.01 3.12 2.76 4.85 2.52 7.28 10.76 13.40 0.91 3.07 2.45 24 I5_AR1 ActiveIntronRegion 0 7.51 15.90 7.09 14.05 18.47 6.64 10.85 16.74 10.98 9.02 1.48 2.90 6.44 2.69 2.59 2.94 2.61 3.60 10.67 14.89 0.00 3.93 1.06 25 E6_Aa NovelBoundary 0 27.34 6.18 6.62 9.59 18.68 0.00 20.18 21.56 4.34 6.02 0.00 0.00 7.63 0.00 4.45 0.00 4.77 19.61 13.46 21.41 5.87 5.45 0.00 26 ER6a ExonRegion 0 28.18 67.45 43.32 39.01 56.34 108.31 66.57 81.62 57.70 112.88 69.34 38.00 60.30 68.94 26.51 60.12 45.53 109.11 92.76 89.34 11.52 23.20 18.96 27 E6_Da NovelBoundary 0 21.34 9.80 3.61 3.26 8.32 2.27 2.21 8.58 1.42 7.09 0.00 0.00 0.00 0.00 0.00 8.37 13.18 29.43 21.27 6.39 0.00 0.00 0.00 28 E6a_E7a KnownJunction 0 23.34 31.31 40.03 30.30 23.77 119.65 80.91 92.13 76.82 139.44 77.97 38.56 62.50 60.45 27.32 68.87 38.15 124.36 112.00 95.36 15.20 17.82 12.38 29 E7_Aa NovelBoundary 0 0.00 3.35 1.83 3.70 26.40 4.77 31.62 8.95 3.39 2.79 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER7a ExonRegion 0 30.62 54.59 50.66 47.29 61.03 89.76 57.93 90.69 62.16 133.52 64.33 49.78 61.45 75.43 24.54 61.80 56.23 113.33 108.16 96.59 7.49 25.46 20.78 31 E7_Da NovelBoundary 0 6.96 6.31 0.00 13.48 0.00 0.00 2.25 4.81 3.15 7.92 0.00 0.00 0.00 2.30 0.00 0.00 13.28 0.00 4.24 0.00 0.00 0.00 0.00 32 E7a_E8a KnownJunction 1 53.34 102.28 72.44 56.14 101.36 179.27 76.71 75.66 49.62 113.44 61.54 54.32 54.38 94.36 24.72 85.11 57.04 130.58 158.03 122.08 11.61 39.07 24.58 33 ER8a ExonRegion 0 38.56 66.10 49.72 46.48 48.09 98.84 57.01 90.11 51.19 112.70 51.87 38.69 51.32 71.56 29.79 62.65 54.87 115.74 129.27 94.85 12.03 33.03 22.68 34 E8_Da NovelBoundary 1 13.78 2.57 10.29 9.92 6.28 0.00 16.30 18.03 4.51 25.98 4.58 0.00 26.46 12.48 8.90 25.63 8.32 15.96 14.21 21.03 2.35 5.39 3.24 35 E8a_E9a KnownJunction 0 28.38 40.19 49.02 49.58 46.77 80.01 31.58 97.02 43.46 132.27 58.59 38.26 19.80 62.81 13.35 54.86 45.91 155.04 167.25 77.85 13.78 27.07 39.78 36 I8 Intron 0 4.70 7.62 6.01 7.92 6.35 5.47 10.43 7.29 6.53 14.08 5.18 3.10 7.42 7.56 3.41 10.16 8.75 31.90 17.79 18.50 2.14 3.98 6.14 37 I8_SR1 SilentIntronRegion 0 4.44 5.70 5.53 6.55 7.45 5.22 11.91 10.04 6.10 14.06 5.20 5.92 13.99 6.15 3.37 14.58 10.77 24.63 23.70 21.10 1.28 6.71 6.11 38 I8_AR1 ActiveIntronRegion 0 4.00 5.73 3.85 6.72 3.92 4.70 10.82 2.15 5.57 10.19 5.93 2.08 3.59 8.06 2.06 9.02 8.53 45.72 13.68 16.43 3.96 2.06 4.67 39 I8_SR2 SilentIntronRegion 0 3.29 7.13 8.14 8.43 6.36 7.62 8.18 11.90 7.95 13.95 3.27 3.95 11.81 8.76 5.47 11.53 7.41 23.35 17.48 16.18 3.39 5.82 4.56 40 I8_AR3 ActiveIntronRegion 0 5.77 10.40 7.10 9.55 7.12 5.50 9.84 7.20 7.03 16.66 5.27 1.46 3.80 7.92 3.68 7.30 7.88 31.00 16.29 18.71 1.20 2.70 7.61 41 E9_Aa NovelBoundary 0 7.11 13.09 20.93 15.38 23.01 2.84 7.99 9.20 11.78 29.09 5.26 5.55 0.00 9.24 0.00 12.48 9.26 56.50 31.62 15.85 0.00 8.57 0.00 42 ER9a ExonRegion 0 26.38 40.92 35.11 30.67 36.12 64.39 32.41 76.38 47.80 112.64 47.15 20.59 25.11 57.64 26.24 46.78 41.73 107.43 105.89 69.72 12.27 25.80 20.07 43 E9a_E10a KnownJunction 0 65.20 56.24 38.88 31.46 68.34 120.90 51.76 70.11 56.54 118.78 48.64 12.60 27.27 62.92 17.80 58.62 43.95 138.00 126.59 56.76 27.43 25.96 33.12 44 I9 Intron 0 9.69 15.39 11.70 12.66 13.74 18.32 18.02 22.41 16.16 31.75 8.85 4.17 7.35 13.72 7.97 15.46 12.86 38.21 28.06 25.95 2.98 6.30 6.54 45 I9_AR2 ActiveIntronRegion 0 6.98 7.92 14.68 14.95 13.85 22.65 21.84 21.66 20.50 31.08 13.28 6.94 9.68 15.63 10.60 21.07 20.14 58.98 38.01 36.96 3.62 7.84 9.44 46 I9_AR3 ActiveIntronRegion 1 9.59 6.10 13.55 24.45 13.54 26.86 29.44 22.88 16.64 32.79 11.82 0.00 7.45 16.81 6.83 24.30 20.97 57.50 58.84 29.79 4.41 6.50 6.91 47 I9_AR4 ActiveIntronRegion 1 6.05 0.44 11.20 20.25 6.31 19.25 20.81 13.33 12.35 39.65 2.35 0.00 0.00 16.01 0.00 24.20 13.44 38.54 28.90 27.36 6.93 2.53 5.87 48 I9_AR5 ActiveIntronRegion 1 3.02 0.29 14.70 17.52 5.35 12.84 16.27 12.35 12.17 43.75 2.49 4.33 0.00 14.15 0.00 24.20 11.32 28.24 7.28 33.43 11.96 2.08 2.94 49 I9_SR1 SilentIntronRegion 0 8.32 16.73 11.02 11.79 13.04 18.94 18.57 20.68 14.65 36.11 8.17 3.83 7.82 14.84 8.34 15.53 10.41 36.14 22.90 27.50 4.43 6.31 6.49 50 I9_AR6 ActiveIntronRegion 0 10.91 12.30 9.15 11.64 8.63 12.28 11.90 21.46 17.20 31.56 6.17 0.93 4.45 9.16 6.39 12.30 11.32 35.22 27.29 25.71 1.76 6.08 6.38 51 I9_SR2 SilentIntronRegion 0 11.69 22.05 15.10 13.68 24.58 23.26 22.37 36.17 22.54 36.77 9.51 6.70 10.57 14.72 6.09 14.06 10.20 35.81 23.78 20.12 0.88 8.05 6.14 52 I9_AR7 ActiveIntronRegion 0 17.68 28.80 16.58 16.97 18.90 22.24 22.65 30.70 14.37 32.34 10.44 6.16 6.50 16.48 9.22 17.07 14.19 34.13 35.96 23.35 0.73 5.52 5.84 53 E10_Aa NovelBoundary 0 29.71 42.49 22.26 27.34 28.35 24.42 19.70 61.04 7.52 65.89 14.11 7.20 6.33 27.14 4.45 12.90 8.70 61.48 31.53 45.25 0.00 16.90 0.00 54 ER10a ExonRegion 0 42.03 41.03 47.05 33.78 23.55 65.52 27.30 86.94 49.43 117.21 45.96 14.69 11.70 61.95 24.87 59.79 30.48 145.62 82.35 65.33 12.25 27.31 21.49 55 E10_Da NovelBoundary 0 3.56 14.01 9.93 4.66 8.66 5.56 2.25 31.09 9.37 26.16 4.63 0.00 0.00 7.24 4.45 0.00 17.30 17.12 0.00 19.94 0.00 0.00 6.91 56 E10a_E11a KnownJunction 0 60.90 13.68 56.83 42.29 10.78 60.14 8.21 69.17 44.65 92.27 48.59 25.51 20.13 31.79 21.01 76.48 51.61 179.04 94.97 74.91 7.97 33.86 22.54 57 I10 Intron 0 14.01 9.17 9.26 8.58 5.65 12.14 7.09 26.13 15.82 28.18 4.08 2.51 1.63 11.40 7.08 11.72 8.37 24.71 17.05 17.99 1.55 2.64 5.79 58 I10_SR1 SilentIntronRegion 0 10.94 8.27 9.27 8.28 4.02 11.54 5.97 21.57 14.60 23.35 3.77 0.00 0.00 11.55 6.49 15.56 9.42 23.44 21.04 18.71 0.93 2.73 6.43 59 I10_AR1 ActiveIntronRegion 0 16.76 10.02 9.34 8.93 7.08 12.78 8.11 30.26 17.01 32.54 4.39 4.66 3.03 11.39 7.65 8.60 7.57 26.04 13.85 17.56 2.09 2.60 5.32 60 E11_Aa NovelBoundary 0 19.93 37.69 7.69 13.45 4.24 26.06 12.45 33.39 21.61 48.46 11.27 0.00 0.00 14.77 4.45 14.44 13.37 41.04 40.66 19.62 3.03 21.86 3.93 61 ER11a ExonRegion 0 44.76 44.64 70.05 45.52 35.11 78.23 34.35 134.65 76.79 175.84 64.16 14.75 35.22 66.59 39.48 62.95 52.23 178.16 118.16 83.37 16.25 33.44 26.96 62 E11a_E12a KnownJunction 0 87.20 39.34 84.09 50.61 27.93 77.00 30.47 172.84 85.36 228.86 59.23 30.61 36.04 77.70 56.12 67.67 73.59 189.73 148.05 107.06 16.31 46.78 23.30 63 ER12a ExonRegion 0 32.01 42.33 74.65 34.88 26.44 64.96 25.81 110.64 56.25 134.02 52.79 14.32 44.38 57.04 38.92 38.91 35.17 109.15 69.20 71.78 10.50 26.17 15.06 64 E12_Da KnownBoundary 0 36.52 18.22 100.38 37.12 29.12 59.28 16.12 134.19 79.57 194.24 40.64 12.00 27.11 67.51 48.71 69.64 31.60 136.09 90.83 59.95 13.53 16.66 19.72 65 E12a_E12b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 ER12b ExonRegion 1 20.89 20.57 79.49 49.12 17.49 48.02 16.75 121.67 60.06 187.48 61.24 9.16 52.75 51.15 36.83 55.87 37.51 152.00 81.30 74.28 13.45 29.41 20.85 67 E12_Ab KnownBoundary 1 42.97 26.97 80.66 59.30 27.76 53.04 29.50 102.44 58.48 181.51 71.33 5.25 93.34 84.58 52.04 66.05 29.64 166.35 118.78 75.87 5.68 32.88 25.78 68 ER12c ExonRegion 0 40.52 30.26 79.27 39.84 27.66 65.29 29.53 125.20 57.15 188.65 69.75 13.45 39.92 60.75 31.76 46.17 37.90 159.23 89.85 70.15 19.61 22.09 25.08 69 E12_Db KnownBoundary 0 17.56 22.17 75.60 49.91 18.76 76.26 38.73 78.37 47.71 134.58 43.70 12.60 40.42 33.32 22.25 39.65 19.64 155.53 90.73 43.98 10.13 16.47 11.95 70 ER12d ExonRegion 0 32.99 34.33 70.63 37.76 24.21 66.25 28.70 81.15 44.19 128.16 47.54 14.50 30.51 50.79 25.51 46.04 45.35 132.12 82.63 68.39 14.50 18.08 22.16 71 E12_Dc NovelBoundary 0 0.00 0.00 1.63 0.00 0.00 2.90 1.77 1.73 3.15 2.74 2.21 0.00 0.00 0.00 0.00 7.69 4.02 6.26 0.00 11.63 0.00 8.39 0.00 72 E12c_E13a KnownJunction 1 45.05 47.36 90.45 61.26 67.57 48.27 52.69 110.90 56.48 121.07 23.37 0.00 40.09 62.63 33.38 40.76 52.17 103.18 86.68 88.21 13.04 2.51 33.55 73 E13_Aa NovelBoundary 0 3.11 0.00 8.52 3.56 20.20 13.06 11.75 7.85 5.99 8.00 0.00 0.00 6.82 2.47 0.00 3.16 3.93 9.62 0.00 5.82 2.97 0.00 0.00 74 ER13a ExonRegion 0 19.83 42.19 86.77 47.52 40.83 67.41 33.33 92.23 45.22 119.24 47.36 5.33 13.39 54.57 31.45 47.17 40.18 127.53 88.41 80.59 12.01 13.65 17.30 75 E13a_E14a KnownJunction 0 69.86 61.70 105.50 58.90 29.29 132.14 50.12 98.13 58.45 133.50 59.65 6.30 13.15 62.75 61.19 70.24 40.02 165.11 139.30 106.23 21.31 10.53 35.94 76 E14_Aa NovelBoundary 0 2.82 9.34 19.34 12.35 12.22 0.00 5.96 4.68 1.79 9.24 2.11 6.75 0.00 5.18 0.00 3.85 13.09 10.49 4.14 8.18 5.07 0.00 0.00 77 ER14a ExonRegion 0 37.23 53.53 80.35 51.64 32.01 64.20 33.74 93.31 47.09 122.48 51.27 11.99 9.52 51.98 37.74 44.80 30.32 151.45 85.93 77.23 14.59 11.99 17.82 78 E14_Da NovelBoundary 0 20.30 27.56 16.85 17.65 16.89 2.78 26.98 8.54 6.60 23.96 0.00 0.00 0.00 7.77 4.45 0.00 9.07 16.08 12.52 14.57 2.53 2.33 4.18 79 E14a_E15a KnownJunction 0 48.82 53.94 55.29 47.01 46.52 44.24 31.49 104.62 46.73 109.19 55.17 0.00 6.17 51.92 28.68 29.48 25.62 124.19 95.16 101.12 2.97 8.94 22.79 80 E14a_E16a KnownJunction 0 6.82 8.62 1.51 0.00 0.00 0.00 0.00 1.81 3.21 3.20 0.00 0.00 0.00 0.00 0.00 0.00 4.77 5.55 4.14 3.26 0.00 0.00 0.00 81 I14 Intron 0 9.15 24.48 20.95 14.82 13.84 15.46 13.97 20.25 7.30 22.03 4.11 3.59 4.03 6.10 5.73 11.79 4.44 21.48 12.18 15.22 2.34 2.21 2.08 82 I14_AR1 ActiveIntronRegion 0 9.17 24.55 21.01 14.86 13.87 15.50 14.01 20.31 7.32 22.09 4.12 3.60 4.04 6.12 5.75 11.82 4.45 21.54 12.22 15.26 2.35 2.22 2.09 83 ER15a ExonRegion 0 55.89 43.72 82.70 50.36 35.60 77.84 35.64 90.09 51.68 126.39 41.79 14.67 13.00 50.22 41.68 38.17 28.50 104.05 69.41 91.00 15.15 13.44 12.24 84 E15a_E16a KnownJunction 0 93.42 36.64 71.49 46.18 31.92 84.61 31.80 80.22 47.86 126.14 33.90 5.70 35.22 39.14 39.93 47.00 21.69 127.93 123.96 105.46 6.30 16.41 12.21 85 ER16a ExonRegion 0 120.48 100.85 97.25 56.60 46.85 89.81 43.50 115.59 54.87 131.68 47.80 7.21 18.34 51.31 37.47 40.90 43.23 125.00 83.97 89.24 10.37 20.03 20.35 86 E16a_E17a KnownJunction 0 70.09 152.28 123.65 81.74 112.65 177.28 144.85 152.38 48.03 157.22 57.33 6.30 40.58 37.38 24.60 43.41 32.63 119.22 152.85 80.34 7.85 26.15 30.82 87 ER17a ExonRegion 0 77.75 68.94 88.47 61.28 63.21 81.19 43.34 106.42 47.99 125.85 40.05 12.64 26.41 38.72 31.89 48.48 31.35 88.52 84.41 64.81 6.25 25.03 17.39