Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HSP90AA1 Gene 0 1595.71 2607.92 2688.46 2261.65 2527.77 2616.65 1947.70 1719.58 1324.53 4248.24 2869.90 5014.47 1506.84 3586.75 2185.80 2727.97 2494.30 1533.26 2107.03 2250.90 875.95 1505.56 957.37 2 334701 Transcript 0 2.60 11.04 5.31 20.28 10.20 43.11 16.62 35.67 23.82 64.34 0.25 3.71 1.18 7.46 4.19 4.60 10.25 12.49 23.54 7.27 12.71 3.18 0.93 3 216281 Transcript 1 17.40 144.91 22.88 15.83 85.20 143.88 95.98 58.62 21.77 59.19 31.72 0.82 3.30 38.62 22.24 56.18 63.69 94.38 73.79 61.72 35.31 25.90 59.47 4 456274 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 441629 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 2.12 5.87 4.98 7.74 4.64 29.82 7.13 15.17 10.10 32.62 0.99 0.63 1.84 5.58 4.94 3.83 6.07 9.47 8.12 8.13 7.18 3.40 0.90 7 E1a_E2a KnownJunction 0 0.00 9.74 0.00 12.79 0.00 33.11 10.42 35.49 18.61 50.61 0.00 6.30 0.00 7.77 0.00 4.19 9.44 7.83 9.41 3.26 11.55 0.00 0.00 8 ER2a ExonRegion 0 4.49 18.76 11.66 34.92 17.65 50.63 21.89 41.41 29.50 81.36 0.03 1.60 2.87 11.80 7.36 10.37 12.39 21.20 31.94 8.95 23.33 3.85 2.84 9 E2a_E4a KnownJunction 0 3.78 9.80 4.58 25.67 18.51 58.89 27.03 50.60 37.07 92.75 0.00 6.30 0.00 4.71 4.45 0.00 13.09 11.44 44.71 8.76 8.77 5.45 0.00 10 ER3a ExonRegion 0 17.40 144.91 22.88 15.83 85.20 143.88 95.98 58.62 21.77 59.19 31.72 0.82 3.30 38.62 22.24 56.18 63.69 94.38 73.79 61.72 35.31 25.90 59.47 11 E3_Ab KnownBoundary 0 65.42 210.42 27.94 34.03 111.88 176.32 137.92 69.33 44.04 100.22 67.23 6.30 20.45 48.86 68.11 64.51 58.34 117.44 71.15 128.54 17.42 24.06 59.50 12 ER3b ExonRegion 1 1432.70 1915.32 1351.54 1340.66 1625.84 2367.31 1480.78 1032.24 1103.09 3255.33 2694.36 63.52 104.64 2352.62 1847.40 3234.70 3020.21 1519.17 1632.22 4182.01 1059.64 1122.41 1223.52 13 E3a_E4a KnownJunction 1 4058.13 4910.57 3154.56 3204.49 4042.02 5830.11 3524.27 2311.89 2486.66 7300.06 6282.54 275.19 327.90 4525.13 2065.40 8049.51 6667.50 3838.91 4361.82 8152.89 2504.52 2387.25 3145.46 14 ER4a ExonRegion 1 678.00 991.48 1751.68 1535.19 720.54 1061.57 690.00 1398.58 1472.15 4647.53 3258.97 662.44 248.72 1720.26 979.01 2486.31 3262.04 2010.39 1712.41 3077.14 1275.87 957.72 986.59 15 E4a_E5a KnownJunction 1 669.75 1059.94 2405.65 2666.96 1396.18 1359.96 1166.69 1973.36 1997.09 5942.54 3435.08 3661.34 1035.32 7281.75 4904.27 10038.48 2790.55 5173.92 5604.02 5602.66 935.49 3488.84 3670.27 16 ER5a ExonRegion 0 2428.08 2097.10 2558.89 2115.72 2689.66 3015.02 2083.87 1897.08 1853.48 5431.99 3748.95 4554.06 1331.72 5105.92 2074.18 4555.81 3508.10 3246.51 2934.23 3404.68 1622.91 1928.15 1631.31 17 E5_Da KnownBoundary 0 7577.57 3769.00 3412.48 2770.84 4662.65 3356.48 2851.32 2409.36 2025.73 6058.01 5363.31 8407.39 3771.34 9546.69 3769.59 5494.71 5023.74 3690.26 4200.78 4915.93 2547.27 2331.96 2090.12 18 E5a_E13b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER5b ExonRegion 0 6832.33 3334.39 3114.85 2749.98 3449.75 2654.27 2279.46 2109.32 1832.42 5691.09 4619.95 6425.00 2713.18 7149.29 2920.98 4688.73 4268.61 3599.26 3282.62 3888.85 2082.69 1812.63 1690.48 20 E5b_E6a KnownJunction 0 8151.82 3821.49 3563.92 3269.68 3539.39 2895.61 2677.94 2186.25 1872.06 5979.98 3912.89 5881.77 2283.45 7083.91 3169.55 4491.73 3783.35 3009.39 2984.18 4082.77 1487.29 1844.78 1565.05 21 ER6a ExonRegion 0 3342.79 3352.26 3932.17 3589.57 6609.33 4015.76 4365.43 2328.54 1989.08 6256.93 4598.15 6724.99 3088.81 6442.12 2651.20 3807.47 4147.55 2350.59 2717.76 4108.89 1301.09 2020.64 1365.85 22 E6a_E7a KnownJunction 1 4707.58 4230.96 4960.74 4850.90 5856.71 3958.97 3655.17 2737.71 2231.34 6815.25 3744.63 8531.48 4794.33 6205.99 3095.50 3958.62 3518.56 1865.57 2945.12 4119.72 711.74 2110.11 1353.94 23 ER7a ExonRegion 1 3812.45 3622.09 4579.39 4381.68 5160.37 3749.86 3230.65 2477.37 2015.18 6312.07 3758.11 8704.08 4671.94 5965.85 2999.90 3928.30 3490.46 1832.70 2977.40 3881.75 687.24 1928.74 1385.26 24 ER7b ExonRegion 0 3665.20 3481.07 4388.98 4162.24 5122.18 3975.53 3738.53 2322.61 1991.87 6012.40 4922.80 11299.09 5376.39 5895.93 3172.42 4075.66 4550.25 1647.77 3721.17 3756.00 1148.54 2689.84 1328.51 25 E7a_E8a KnownJunction 0 3089.81 5433.37 5458.94 6849.61 3669.78 3594.29 3235.45 3047.94 2622.34 8095.17 5361.78 11429.97 5058.92 4758.04 2183.82 3726.54 5235.99 2262.61 2664.74 3381.28 1795.25 2505.61 1326.12 26 E8_Aa NovelBoundary 0 31.19 10.06 904.11 32.83 7.72 0.00 49.59 16.43 24.04 54.40 41.85 132.49 0.00 22.01 4.45 8.72 13.56 13.35 241.80 0.00 28.54 10.35 36.45 27 ER8a ExonRegion 0 2217.54 6335.15 4229.30 4059.64 3800.30 3920.51 3418.96 2675.40 2151.18 7149.38 5657.96 12485.37 3835.91 7054.56 3058.44 4412.69 4813.92 1807.04 3421.94 3584.68 1401.03 2817.82 1443.94 28 E8a_E9a KnownJunction 0 1765.72 8358.31 4329.71 4430.74 3764.01 3742.96 3220.43 2690.02 2052.00 6928.48 4113.30 10741.40 3040.06 5470.45 2930.72 3381.42 3635.06 1393.79 2363.55 3063.04 947.73 2478.00 1065.59 29 E9_Aa NovelBoundary 0 21.49 159.31 1161.55 54.07 24.53 2.16 27.56 18.85 12.64 85.10 56.65 106.98 6.82 31.61 9.64 17.00 17.48 19.19 212.99 8.18 36.20 9.25 68.03 30 ER9a ExonRegion 0 1557.65 5140.70 4671.26 4371.04 4650.29 4610.68 3773.10 3007.54 2221.21 7654.23 4946.75 11855.19 3586.70 5881.44 3283.20 4145.48 4023.12 1560.39 2853.40 3407.95 832.98 3017.00 1422.00 31 E9a_E10a KnownJunction 0 1592.21 6222.38 3752.53 3682.65 6245.84 6704.09 5531.33 2821.13 1924.26 6817.27 4427.59 9501.25 3006.78 5018.57 3511.47 3420.04 3585.41 1354.78 2865.02 3180.65 740.53 2389.51 1285.31 32 ER10a ExonRegion 0 1713.25 6497.96 4109.27 3837.60 4529.64 4590.00 3334.34 2828.81 2157.26 7064.34 5525.53 11040.52 2734.03 6090.74 3560.39 4524.70 4530.44 1937.47 3323.95 3503.94 1285.63 2596.47 1496.32 33 E10_Da NovelBoundary 0 43.49 60.12 907.18 61.80 38.88 2.27 16.38 27.85 47.74 104.44 91.23 276.84 60.71 46.74 9.77 21.53 33.57 0.00 191.82 25.69 55.60 50.89 16.39 34 E10a_E11a KnownJunction 0 2327.82 5474.55 3646.20 3976.58 3856.79 3856.64 2960.71 2989.25 2253.88 7274.03 5993.31 10521.13 3133.40 9396.60 5224.56 4892.99 4990.55 1953.66 3761.05 4102.78 1829.60 2649.14 1682.42 35 E10a_E13a NovelJunction 0 0.00 0.00 251.41 0.00 0.00 0.00 0.00 5.09 7.61 0.00 0.00 0.00 0.00 2.47 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 36 I10 Intron 0 20.43 36.70 710.16 42.63 28.08 13.09 26.40 16.22 25.89 59.90 73.83 159.71 37.69 40.12 16.62 19.34 29.79 11.00 248.71 20.09 31.89 34.98 51.77 37 I10_AR1 ActiveIntronRegion 0 20.60 37.00 715.95 42.98 28.31 13.19 26.62 16.35 26.10 60.38 74.44 161.03 37.99 40.45 16.75 19.50 30.04 11.09 250.74 20.25 32.13 35.26 52.20 38 E11_Aa NovelBoundary 0 45.27 52.89 1319.05 54.31 31.75 2.90 38.16 42.22 49.54 64.68 80.49 221.62 56.33 64.28 28.06 24.18 67.32 14.55 331.96 23.97 78.89 27.43 82.20 39 ER11a ExonRegion 0 1746.00 3912.76 4498.38 3850.40 4179.13 5159.27 3179.89 2978.90 2263.71 7353.79 5490.42 9974.03 2197.71 7697.82 4188.20 5249.16 4745.62 2661.67 4261.25 3782.36 1781.64 2625.64 1799.33 40 E11_Da NovelBoundary 0 111.65 118.66 1676.88 93.99 114.52 37.02 78.57 76.11 49.48 179.12 120.87 297.40 12.50 109.37 59.71 88.95 83.78 52.65 344.10 40.97 54.98 99.01 88.27 41 E11a_E12a KnownJunction 0 1958.05 4053.36 4390.09 4253.90 4521.99 5513.08 3826.43 3405.86 2514.64 8169.07 5622.69 8562.54 1471.66 7018.81 4701.79 5416.19 5237.39 2892.41 3910.61 3796.23 1871.36 2645.47 1760.19 42 E11a_E13a NovelJunction 0 3.70 0.00 126.49 0.00 0.00 7.61 0.00 1.81 1.71 1.24 7.69 5.55 0.00 7.65 0.00 12.05 0.00 0.00 0.00 0.00 0.00 8.51 0.00 43 I11 Intron 0 107.58 74.23 810.13 68.59 76.22 33.78 68.43 43.94 34.54 86.87 74.19 150.27 23.53 119.71 57.93 70.97 35.47 17.90 252.65 31.57 40.21 50.82 70.63 44 I11_AR1 ActiveIntronRegion 0 108.30 74.72 815.40 69.05 76.72 34.01 68.89 44.24 34.77 87.44 74.68 151.24 23.67 120.51 58.31 71.45 35.70 18.02 254.31 31.79 40.48 51.15 71.09 45 E12_Aa NovelBoundary 0 98.83 110.64 1865.55 185.42 65.96 58.66 73.31 118.95 70.02 180.51 91.76 129.94 38.63 109.95 74.42 112.19 52.92 15.55 205.37 32.47 36.14 47.33 103.89 46 ER12a ExonRegion 0 2254.94 4122.66 6089.30 4486.72 4078.59 5323.70 3214.42 3607.83 2630.32 8415.97 5336.34 9298.32 1857.07 6865.40 5311.61 6103.33 4791.30 4157.02 5053.41 4139.40 2192.07 2812.11 2170.43 47 E12_Da NovelBoundary 0 222.71 157.47 2393.56 158.25 113.24 25.95 98.70 75.66 53.15 188.22 118.98 156.05 6.82 61.63 38.07 57.25 48.43 28.73 578.28 11.63 70.12 94.91 141.96 48 E12a_E13a KnownJunction 0 4383.00 7983.38 5103.66 4549.30 7741.18 7105.23 5110.02 4469.60 2816.61 9175.08 6171.51 10411.59 2308.45 8325.49 7183.78 6057.21 5334.73 3657.43 6538.64 4989.89 2835.21 3990.71 2641.82 49 I12 Intron 0 107.56 108.51 943.89 62.30 60.70 11.65 45.42 37.87 21.38 90.89 50.52 171.16 36.50 48.53 45.01 41.00 26.36 8.18 234.72 15.43 29.18 51.43 74.08 50 I12_AR1 ActiveIntronRegion 0 108.31 109.27 950.55 62.74 61.14 11.73 45.74 38.14 21.53 91.53 50.86 172.36 36.73 48.86 45.31 41.29 26.54 8.24 236.38 15.53 29.39 51.80 74.61 51 E13_Aa NovelBoundary 0 339.62 246.80 1180.33 108.08 68.76 18.51 131.56 57.13 41.20 133.69 89.13 202.72 6.82 77.17 37.46 27.94 12.72 7.46 317.37 12.53 41.08 77.03 43.62 52 E13_Ab NovelBoundary 0 3192.12 6135.68 6774.86 4864.38 5329.04 5636.47 3692.05 3937.15 2527.46 8457.32 5396.42 7908.93 1440.49 6696.42 5648.08 5665.27 4408.78 4018.62 4843.62 4009.52 2002.95 2851.58 2132.11 53 ER13a ExonRegion 0 3117.10 6174.67 5439.60 4447.09 5632.16 5732.52 3714.18 4113.04 2629.82 8687.39 5926.96 8925.66 1807.00 7325.01 5900.01 5683.98 4858.45 4136.19 5121.38 4240.41 2361.12 3238.01 2232.90 54 ER13b ExonRegion 0 2319.93 5082.91 5634.51 4126.23 4790.79 4884.82 3110.00 3502.29 2341.93 7664.72 4494.84 7022.97 1321.39 6337.75 5810.40 5461.14 3660.09 3539.66 4374.79 3804.71 1564.82 2678.72 1866.74 55 E13_Da KnownBoundary 0 2246.92 4970.50 5571.51 4226.97 3861.46 4138.64 2788.35 3680.97 2487.68 8177.58 3601.18 6893.55 1517.76 4985.01 5593.44 3912.73 2686.49 2501.01 3260.71 3460.67 1032.86 2625.45 1483.35 56 ER13c ExonRegion 0 1652.88 2850.22 2350.04 1720.26 1922.67 2214.16 1632.44 1599.21 952.67 3261.93 1338.44 2164.86 449.56 1732.48 1840.48 1146.73 837.66 531.68 894.86 1162.69 198.50 1033.70 427.48 57 E13_Db KnownBoundary 0 233.45 307.97 384.37 232.17 387.27 253.38 251.29 233.92 108.36 390.01 110.98 378.57 165.09 239.10 237.35 98.52 77.89 68.81 174.22 196.48 52.26 117.14 50.11 58 ER13d ExonRegion 0 69.16 86.31 232.84 139.23 83.84 64.52 68.71 101.21 56.61 170.83 77.44 149.68 26.72 82.91 119.35 65.04 45.48 43.02 67.21 92.37 32.28 62.18 43.78 59 IG4 Intergenic 0 0.82 7.18 53.08 6.31 1.51 2.40 5.47 1.64 1.95 5.31 0.75 5.03 1.23 1.13 1.39 1.47 3.03 1.63 4.05 2.18 4.05 1.10 17.32 60 IG4_SR2 SilentIntergenicRegion 0 1.07 11.02 53.80 10.45 2.40 5.09 11.04 2.60 1.77 5.61 1.00 5.79 0.98 1.03 2.07 2.25 6.03 0.47 3.00 4.79 3.98 1.21 16.68 61 IG4_AR3 ActiveIntergenicRegion 0 1.15 10.04 68.65 11.34 2.10 1.98 7.12 0.93 3.07 8.89 1.70 10.48 2.09 1.10 1.54 1.61 3.70 3.16 5.48 2.17 3.72 1.63 22.22 62 IG4_AR2 ActiveIntergenicRegion 0 2.20 11.14 81.36 6.65 5.35 0.00 5.30 1.45 9.58 12.71 0.00 5.54 0.00 0.06 0.58 0.24 5.28 1.70 6.12 2.13 10.23 0.17 32.19 63 IG4_AR1 ActiveIntergenicRegion 0 0.62 7.88 107.10 8.29 0.89 0.20 1.71 2.52 5.16 11.17 1.32 16.54 0.65 1.47 2.98 3.51 5.73 5.41 5.53 0.00 7.44 2.40 29.98 64 IG4_SR1 SilentIntergenicRegion 0 0.53 3.60 41.49 1.47 0.66 1.34 1.88 1.35 0.98 2.83 0.17 0.99 1.20 1.30 0.81 0.81 0.56 1.35 4.09 0.88 3.85 0.75 14.54