Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF410 Gene 0 135.07 136.18 141.24 158.66 130.93 116.15 116.52 125.50 95.65 299.84 205.11 131.40 82.15 163.75 135.14 153.36 151.08 132.72 109.82 101.86 98.19 144.31 101.53 2 412490 Transcript 0 3.63 14.60 0.00 3.40 0.00 0.00 6.49 3.78 3.59 5.13 6.79 0.00 0.00 7.30 4.45 0.00 3.74 11.52 8.85 4.86 0.00 14.45 3.67 3 442160 Transcript 0 1.90 2.63 3.12 4.78 5.59 0.66 2.96 3.22 3.79 5.71 5.97 1.96 1.49 3.03 5.67 4.27 6.23 5.98 6.48 6.01 5.45 6.82 3.25 4 334521 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 458102 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 324593 Transcript 1 37.49 3.03 27.73 9.99 12.73 5.39 5.87 4.85 2.92 12.68 43.01 12.15 0.00 48.15 56.37 79.38 56.10 8.46 0.00 23.71 16.43 91.05 16.13 7 398139 Transcript 0 7.83 6.10 4.84 3.42 5.85 3.87 5.30 3.55 3.11 11.82 8.78 4.15 3.98 2.96 7.86 6.64 4.51 6.64 2.73 8.40 3.90 2.98 4.38 8 IG28 Intergenic 0 5.82 15.09 11.31 13.97 16.83 11.08 10.08 15.06 12.39 23.93 6.46 11.39 7.58 10.21 12.42 6.43 6.16 16.65 19.72 13.07 11.90 7.06 9.67 9 IG28_SR1 SilentIntergenicRegion 0 3.44 17.20 14.60 21.03 15.04 10.32 9.65 16.36 15.66 21.84 5.46 19.93 11.97 8.78 13.41 3.88 2.94 7.88 16.15 16.08 8.47 6.94 10.13 10 IG28_AR1 ActiveIntergenicRegion 0 7.27 13.87 9.37 9.78 17.95 11.57 10.37 14.33 10.46 25.25 7.08 6.31 4.97 11.10 11.87 7.97 8.11 21.96 21.92 11.29 13.99 7.16 9.42 11 ER1a ExonRegion 1 67.92 49.44 10.29 23.90 47.39 99.27 95.35 16.09 15.75 63.64 44.54 2.31 7.30 83.08 37.01 65.19 59.27 36.91 33.06 39.76 25.81 33.61 29.37 12 E1a_E2a KnownJunction 1 132.76 115.24 57.66 93.93 112.05 199.32 150.46 70.52 64.18 216.94 88.97 11.40 34.09 62.81 56.25 135.09 132.02 111.18 67.11 79.58 40.09 76.42 67.27 13 ER2a ExonRegion 0 54.59 60.54 60.67 78.02 73.44 61.05 54.89 86.29 73.80 217.04 191.88 96.89 104.21 124.86 62.22 123.25 154.92 77.24 67.68 92.46 67.73 96.99 65.14 14 E2a_E3a KnownJunction 0 77.94 87.68 71.91 98.82 95.16 61.56 76.31 92.42 115.48 270.04 202.74 185.61 158.59 85.47 71.33 261.98 130.62 171.12 129.89 102.27 77.72 145.49 125.83 15 ER3a ExonRegion 0 53.43 133.89 84.78 115.81 169.75 181.25 175.92 114.99 106.16 288.33 243.97 210.93 170.77 168.88 89.53 201.23 185.36 144.63 113.81 112.28 128.43 150.23 113.88 16 E3a_E4a KnownJunction 0 0.00 0.00 0.00 1.76 3.23 0.00 0.00 0.00 1.77 1.13 4.69 0.00 0.00 4.94 0.00 0.00 7.67 0.00 13.46 0.00 3.15 5.57 0.00 17 E3a_E5a KnownJunction 0 80.01 241.47 100.71 151.60 120.12 129.81 144.68 96.65 111.25 332.79 262.70 220.12 115.25 198.36 94.69 200.12 192.52 130.95 151.25 137.74 141.84 196.50 82.89 18 ER4a ExonRegion 0 0.00 0.08 0.00 1.92 5.88 1.47 0.03 0.00 1.33 1.39 4.24 0.00 0.00 3.34 0.17 0.00 9.58 1.74 7.81 0.00 1.99 5.15 0.12 19 E4a_E5a KnownJunction 0 0.00 0.00 0.00 1.73 8.15 0.00 0.00 0.00 1.16 1.21 2.32 0.00 0.00 0.00 0.00 0.00 4.02 0.00 0.00 3.07 3.15 8.33 0.00 20 ER5a ExonRegion 0 122.69 195.87 102.07 149.29 123.54 105.18 122.06 119.41 105.50 333.17 270.65 315.23 176.79 227.07 107.47 174.35 236.48 188.30 120.54 129.32 166.44 168.24 96.41 21 E5_Da KnownBoundary 1 254.56 193.06 146.03 162.35 166.30 206.93 181.24 149.35 90.25 341.74 245.69 298.30 344.30 292.84 143.52 228.74 283.78 219.99 209.61 182.23 209.92 207.15 121.30 22 E5a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER5b ExonRegion 0 138.88 153.71 156.85 190.24 155.82 153.55 131.85 155.05 124.75 385.02 261.11 292.11 231.88 245.96 137.98 218.01 282.52 229.45 183.44 145.06 179.60 203.82 149.51 24 E5_Ab KnownBoundary 1 119.35 128.00 128.91 173.24 141.68 98.18 122.77 120.63 116.84 291.56 262.91 319.15 151.45 224.15 78.62 205.84 223.94 159.68 127.72 102.20 138.01 170.60 161.34 25 ER5c ExonRegion 0 100.65 193.37 117.69 182.69 161.11 137.76 144.93 118.76 119.74 348.38 291.82 236.82 119.91 261.88 122.92 250.95 264.51 197.94 125.18 153.50 137.93 188.33 129.83 26 E5b_E6a KnownJunction 0 59.94 213.58 147.48 196.31 258.15 180.98 205.80 116.81 105.41 347.14 329.72 281.79 132.46 322.74 157.49 250.70 273.12 194.13 137.60 138.19 145.92 170.41 132.31 27 ER6a ExonRegion 0 101.33 168.96 159.51 189.25 144.13 109.45 117.03 129.61 122.20 336.29 295.48 192.82 130.17 224.16 124.03 220.71 245.35 216.23 152.42 133.78 135.71 176.31 129.52 28 E6a_E7a KnownJunction 0 140.99 217.53 186.81 189.72 123.26 152.19 150.20 133.65 130.06 358.20 286.55 220.57 68.99 248.28 132.77 269.76 213.46 211.41 172.43 121.19 208.87 191.29 116.35 29 E6a_E8a KnownJunction 0 3.63 14.60 0.00 3.40 0.00 0.00 6.49 3.78 3.59 5.13 6.79 0.00 0.00 7.30 4.45 0.00 3.74 11.52 8.85 4.86 0.00 14.45 3.67 30 ER7a ExonRegion 0 80.47 156.91 169.09 197.72 140.20 138.39 147.53 138.00 120.26 360.35 265.79 163.86 109.89 212.37 138.61 242.16 198.34 239.79 161.91 134.54 153.94 180.99 161.50 31 E7a_E8a KnownJunction 1 92.53 117.48 192.87 193.48 97.45 99.37 131.07 138.83 85.44 370.56 156.14 66.32 110.87 221.85 139.81 260.53 118.93 156.65 164.24 90.57 113.86 207.40 140.51 32 E7a_E8b KnownJunction 0 3.26 3.22 1.83 0.00 7.39 0.00 1.77 0.00 1.62 1.67 8.32 0.00 0.00 0.00 5.19 11.71 4.21 3.90 0.00 3.26 0.00 3.12 3.93 33 E8_Ab NovelBoundary 0 105.50 145.17 138.67 187.02 133.36 143.44 161.28 125.40 71.56 282.88 222.16 112.84 112.17 198.07 130.91 220.88 225.43 168.72 131.77 144.45 138.69 169.13 134.53 34 ER8a ExonRegion 0 80.99 122.69 172.41 185.40 95.35 110.58 126.84 137.30 94.36 343.96 201.09 82.55 99.90 202.69 130.17 221.03 166.81 171.66 132.51 103.55 124.80 197.93 135.67 35 ER8b ExonRegion 0 82.66 114.63 164.23 194.75 131.18 145.35 130.72 139.46 106.64 366.01 282.00 150.51 93.92 204.00 149.80 203.59 248.61 212.00 143.51 168.87 157.04 157.25 126.35 36 E8_Da KnownBoundary 0 118.47 124.19 150.56 155.89 169.35 177.28 155.76 127.08 100.87 355.44 302.81 149.15 122.88 196.78 149.33 221.39 251.71 211.25 177.98 203.32 185.64 174.45 142.04 37 ER8c ExonRegion 0 104.69 143.87 158.40 179.89 102.52 132.47 116.02 126.60 108.87 352.65 240.51 107.93 55.87 172.61 127.50 197.49 176.71 206.61 118.98 125.48 139.08 153.07 126.82 38 E8b_E9a KnownJunction 1 241.60 196.15 201.94 182.06 182.77 170.13 179.43 125.85 98.26 397.32 245.90 43.36 93.83 229.74 164.04 246.94 259.75 238.90 149.37 111.09 128.19 190.86 126.25 39 ER9a ExonRegion 0 130.71 137.36 148.11 147.04 111.16 131.67 115.46 105.26 91.32 343.93 194.23 91.88 63.42 190.00 137.62 158.88 157.97 134.60 102.14 111.77 112.17 155.48 104.41 40 E9a_E10a KnownJunction 0 192.11 140.76 113.27 145.77 84.47 107.89 86.65 102.56 105.84 273.21 137.93 93.18 41.07 170.11 127.45 176.88 115.57 163.41 102.69 91.79 120.47 125.77 120.19 41 I9_AR1 ActiveIntronRegion 0 13.55 4.88 6.13 23.85 8.83 9.54 38.13 22.82 11.98 15.02 3.87 2.60 13.13 1.62 8.70 19.32 3.30 7.39 9.56 4.89 0.00 6.25 9.10 42 I9_SR2 SilentIntronRegion 0 13.98 11.52 9.50 27.12 21.85 6.75 25.01 17.53 9.39 18.64 3.11 14.24 18.10 1.42 5.17 9.54 8.30 6.66 9.84 10.60 2.76 3.42 9.13 43 I9_AR2 ActiveIntronRegion 0 17.93 14.88 15.51 33.24 17.71 6.24 17.89 15.43 10.08 16.94 0.86 7.42 10.97 3.50 10.49 9.14 11.53 11.34 12.50 11.11 2.22 2.52 12.71 44 I9_AR4 ActiveIntronRegion 0 32.87 14.71 8.94 23.65 20.62 1.29 13.86 5.69 19.33 14.03 1.93 3.57 9.38 0.00 1.88 9.09 4.47 10.11 3.19 17.40 1.30 1.96 9.33 45 ER10a ExonRegion 0 135.74 122.71 146.62 157.74 117.65 150.60 119.07 119.94 97.06 310.68 227.74 85.08 47.83 220.43 146.79 163.80 163.73 200.94 124.53 104.22 141.51 164.71 133.08 46 E10a_E11a KnownJunction 0 125.28 123.07 129.27 134.71 79.80 133.45 76.75 106.71 87.96 331.42 160.20 45.01 40.42 154.22 142.65 116.04 84.43 161.25 102.78 58.48 102.61 83.64 100.64 47 E10a_E12a KnownJunction 0 37.49 3.03 27.73 9.99 12.73 5.39 5.87 4.85 2.92 12.68 43.01 12.15 0.00 48.15 56.37 79.38 56.10 8.46 0.00 23.71 16.43 91.05 16.13 48 ER11a ExonRegion 0 181.24 182.21 161.98 171.12 127.22 156.87 134.11 134.73 102.25 333.77 188.63 90.61 49.89 170.73 137.70 118.44 117.50 177.84 139.95 79.57 111.30 121.17 110.36 49 E11a_E12a KnownJunction 0 164.33 190.95 176.58 210.73 106.54 145.88 152.67 137.97 109.23 346.79 180.26 61.67 61.85 146.63 106.06 108.69 101.64 187.58 120.57 80.73 107.31 132.45 120.96 50 I11_SR1 SilentIntronRegion 0 11.67 20.36 12.85 26.78 39.02 9.81 27.21 19.88 22.82 36.56 0.00 9.13 11.47 3.62 5.18 2.69 6.33 8.07 14.29 8.74 4.65 10.64 4.17 51 I11_AR2 ActiveIntronRegion 0 9.82 16.84 11.16 30.35 40.85 32.41 28.73 21.36 23.06 38.26 0.00 3.38 5.13 2.94 3.49 0.00 13.62 7.65 6.67 11.87 5.06 15.82 7.25 52 ER12a ExonRegion 0 201.15 183.34 222.18 231.09 124.76 165.87 143.50 158.53 116.00 365.95 245.48 106.00 65.55 211.96 206.78 189.71 179.51 179.66 174.65 127.48 128.26 200.93 143.41 53 E12a_E13a KnownJunction 0 0.00 0.00 7.33 5.09 0.00 0.00 3.49 4.48 0.00 14.24 11.53 0.00 0.00 0.00 4.45 7.26 0.00 7.21 0.00 14.96 7.78 5.27 0.00 54 E12a_E14a KnownJunction 0 0.00 0.00 0.00 1.76 4.33 2.38 1.68 0.00 1.79 6.21 4.63 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 2.94 3.09 0.00 0.00 55 E12a_E15a KnownJunction 0 511.79 222.20 222.88 236.87 300.00 206.47 270.36 187.71 126.71 380.77 296.44 123.94 144.63 278.59 194.94 216.27 264.24 158.52 145.70 122.47 151.73 191.66 128.13 56 E13_Aa NovelBoundary 0 205.22 234.83 387.15 353.93 240.15 311.24 324.95 352.29 370.97 258.28 97.71 40.36 97.07 54.74 96.17 237.37 156.43 271.56 251.30 199.49 117.93 70.72 176.87 57 ER13a ExonRegion 0 9.52 13.08 8.28 13.37 10.70 1.83 11.31 11.64 14.68 10.60 7.05 9.80 7.45 6.86 23.75 14.07 9.90 20.96 11.12 12.04 11.19 9.78 16.12 58 E13_Da NovelBoundary 0 155.95 184.44 191.86 284.98 142.02 59.62 124.45 262.30 206.57 260.61 41.69 11.40 22.73 23.90 59.21 92.03 72.00 349.29 100.80 97.79 23.17 11.63 63.25 59 ER14a ExonRegion 0 16.71 18.74 6.63 10.09 7.35 10.21 15.58 5.50 7.23 14.80 11.74 16.61 15.92 11.82 21.81 14.86 13.83 13.25 10.94 21.14 12.50 8.81 13.60 60 E14_Da NovelBoundary 1 173.36 173.98 259.45 220.52 121.31 148.15 241.97 207.01 237.84 196.63 79.60 61.82 62.17 37.73 114.72 196.87 156.99 234.13 210.64 146.05 99.89 68.34 165.69 61 E14a_E15a KnownJunction 0 11.34 2.43 10.91 1.83 4.33 2.90 2.16 8.71 1.79 24.63 10.42 0.00 0.00 0.00 4.45 0.00 0.00 7.46 0.00 6.26 0.00 0.00 0.00 62 I14_SR2 SilentIntronRegion 0 34.44 13.83 15.71 23.84 12.69 10.51 19.61 11.90 11.31 24.70 4.03 6.44 3.92 3.73 7.85 10.21 6.57 8.79 8.78 13.17 4.03 8.87 11.11 63 E15_Aa NovelBoundary 0 71.27 29.93 26.67 32.46 33.70 14.65 32.28 14.01 16.03 19.31 5.32 6.30 0.00 2.47 0.00 3.42 9.07 0.00 13.27 8.44 0.00 13.59 19.80 64 ER15a ExonRegion 0 230.81 162.48 198.88 208.90 188.92 125.78 139.40 176.62 110.97 366.61 210.75 140.53 70.55 158.29 200.24 143.10 126.41 87.64 110.13 103.01 72.86 169.52 100.22 65 IG29 Intergenic 0 13.32 39.72 8.56 29.66 18.11 18.73 14.62 17.58 16.61 20.29 1.95 9.36 11.19 5.90 6.86 5.82 4.90 8.46 13.62 15.15 4.18 6.56 5.05 66 IG29_AR1 ActiveIntergenicRegion 0 5.09 15.97 8.28 24.75 16.03 13.66 13.60 13.05 11.28 19.40 0.91 9.59 10.07 1.53 5.40 4.25 4.13 4.04 3.54 13.67 0.70 5.03 6.74 67 IG29_SR1 SilentIntergenicRegion 0 21.18 59.95 9.77 35.07 19.40 19.66 16.05 22.72 21.28 22.00 1.44 7.62 12.34 7.04 7.14 5.50 6.04 10.59 19.95 14.92 5.10 6.78 3.23 68 IG29_AR2 ActiveIntergenicRegion 0 42.07 58.55 0.00 0.00 15.05 34.38 17.32 3.46 4.94 3.44 1.93 21.47 10.75 19.42 9.55 8.54 3.30 3.70 25.48 24.56 3.95 6.25 2.57 69 IG29_AR3 ActiveIntergenicRegion 0 13.02 18.93 0.00 0.00 1.65 7.05 3.56 4.12 6.27 3.97 0.30 9.32 3.97 7.00 3.57 0.00 1.78 1.85 23.77 10.64 0.17 2.88 0.00 70 IG29_AR4 ActiveIntergenicRegion 0 5.27 38.79 8.33 35.37 22.19 27.37 13.72 18.16 19.84 22.68 6.41 11.76 11.55 11.09 9.69 11.09 4.11 15.25 17.17 18.53 10.96 10.37 7.31