Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ACYP1 Gene 0 114.57 216.38 122.94 137.50 186.14 221.90 183.31 201.27 177.31 228.49 58.80 42.39 24.21 51.33 85.50 70.25 57.60 88.50 36.81 85.35 49.27 79.07 51.89 2 238618 Transcript 1 3.78 27.89 57.24 70.79 34.63 5.68 17.62 89.79 124.33 157.81 78.91 18.46 0.00 28.25 9.64 7.95 54.32 27.82 0.00 21.35 79.32 22.47 0.00 3 357971 Transcript 0 10.10 25.86 34.12 8.13 14.01 3.27 18.35 30.00 18.11 29.95 19.04 15.73 8.43 13.40 20.29 18.98 21.33 16.17 7.72 34.96 4.77 11.55 4.33 4 IG2 Intergenic 0 2.28 1.92 1.99 7.78 8.75 5.60 9.34 12.12 14.39 14.66 1.94 6.70 11.14 1.85 2.33 3.58 4.97 6.09 4.48 8.85 1.80 2.33 7.62 5 IG2_SR3 SilentIntergenicRegion 0 3.48 2.30 3.03 9.64 11.50 7.28 11.92 15.27 17.00 18.62 2.96 10.78 17.07 2.74 3.15 5.30 7.48 7.91 5.21 10.77 1.87 3.47 9.50 6 IG2_SR2 SilentIntergenicRegion 0 1.00 2.19 1.72 10.55 11.73 5.81 13.22 12.86 20.25 16.26 1.83 4.67 11.24 1.95 1.70 2.21 5.12 6.08 7.09 9.63 2.38 1.55 8.72 7 ER1a ExonRegion 1 93.60 281.65 71.68 64.12 245.47 393.26 313.48 82.75 86.71 123.56 59.29 3.68 6.27 80.50 88.52 95.67 92.38 106.04 36.07 86.06 64.93 65.42 88.17 8 E1_Da NovelBoundary 0 2.89 22.30 6.42 23.17 15.53 24.47 58.91 25.22 12.21 35.86 0.00 0.00 6.33 2.41 0.00 47.00 20.38 106.20 24.00 53.12 7.54 7.53 7.34 9 E1a_E2a KnownJunction 1 120.02 516.68 182.02 178.47 468.17 815.10 674.32 245.99 260.56 363.55 111.19 11.55 21.91 39.03 60.08 110.57 135.95 283.17 71.81 173.79 115.03 88.24 116.78 10 I1 Intron 0 0.94 9.65 4.87 9.64 7.14 8.16 15.51 19.86 15.28 19.76 2.87 1.70 7.12 3.71 3.59 15.42 14.19 44.55 5.19 25.55 6.85 1.24 9.58 11 I1_SR1 SilentIntronRegion 0 0.95 9.70 4.90 9.70 7.17 8.20 15.60 19.97 15.37 19.88 2.88 1.71 7.16 3.73 3.61 15.51 14.27 44.81 5.23 25.70 6.89 1.24 9.63 12 E2_Aa NovelBoundary 0 3.78 28.09 15.82 20.88 7.56 13.91 41.56 56.27 23.23 49.67 4.53 12.15 0.00 0.00 26.95 28.88 44.13 56.17 11.58 52.92 19.52 0.00 3.16 13 ER2a ExonRegion 1 31.98 121.20 126.08 124.85 162.84 259.66 175.99 203.07 206.44 261.63 86.46 16.24 23.65 40.74 38.06 93.27 84.35 169.31 47.26 77.64 88.12 43.10 64.57 14 E2_Da NovelBoundary 0 16.97 49.79 32.70 69.72 20.88 17.32 17.84 76.07 35.56 87.19 24.90 0.00 6.82 14.24 4.45 44.09 55.91 81.46 15.81 82.71 55.11 2.94 15.28 15 E2a_E3a KnownJunction 0 3.33 6.58 36.22 0.00 0.00 0.00 4.46 21.40 7.96 19.07 20.06 0.00 0.00 0.00 0.00 0.00 20.57 0.00 0.00 18.15 0.00 3.00 4.35 16 E2a_E4a KnownJunction 1 3.78 27.89 57.24 70.79 34.63 5.68 17.62 89.79 124.33 157.81 78.91 18.46 0.00 28.25 9.64 7.95 54.32 27.82 0.00 21.35 79.32 22.47 0.00 17 I2 Intron 0 22.53 102.32 41.95 55.53 75.00 36.24 83.36 76.41 51.79 94.82 13.75 26.49 23.81 25.25 30.22 43.69 37.39 72.14 22.82 55.82 18.34 11.86 18.72 18 I2_AR1 ActiveIntronRegion 0 26.11 126.11 47.79 64.30 72.68 43.45 91.23 89.65 65.07 112.25 20.08 28.41 24.63 32.98 32.60 52.68 46.86 102.71 25.48 75.61 22.78 14.21 21.88 19 I2_SR1 SilentIntronRegion 0 19.53 82.31 37.09 48.23 77.27 30.18 76.90 65.35 40.60 80.24 8.36 24.94 23.21 18.71 28.30 36.15 29.40 46.20 20.63 39.06 14.60 9.89 16.08 20 E3_Aa NovelBoundary 1 67.05 134.32 69.90 106.25 82.09 64.11 302.16 110.94 84.69 130.04 11.95 63.47 34.09 39.97 17.43 77.76 61.99 77.85 15.15 139.53 23.41 5.63 18.69 21 ER3a ExonRegion 0 26.98 67.65 41.83 18.91 35.33 9.82 48.47 51.24 30.91 48.45 31.91 40.88 25.29 37.72 46.90 53.35 38.65 33.38 19.11 81.36 14.31 26.08 8.62 22 E3_Da NovelBoundary 0 27.41 100.05 46.80 73.02 54.50 31.69 118.27 120.43 61.26 126.30 13.11 31.36 5.84 30.37 17.80 34.18 36.00 65.04 21.93 97.67 13.41 6.25 8.37 23 E3a_E4a KnownJunction 0 0.00 3.35 24.30 5.49 6.71 0.00 2.12 17.37 15.45 22.32 5.16 6.30 0.00 2.47 13.97 3.59 4.77 15.13 4.05 5.37 0.00 5.57 0.00 24 I3 Intron 0 93.22 142.00 63.68 87.84 149.24 71.45 141.81 104.38 60.52 113.67 20.14 44.53 39.69 24.32 33.55 32.49 36.09 42.61 20.44 73.11 8.94 20.06 12.01 25 I3_SR1 SilentIntronRegion 0 32.35 138.18 42.88 84.11 126.05 51.99 160.62 132.45 68.80 130.15 17.73 66.85 70.80 22.21 28.51 36.35 22.94 42.19 21.25 84.27 9.49 22.87 12.24 26 I3_SR2 SilentIntronRegion 0 18.57 57.44 39.81 52.91 69.34 40.48 63.53 59.68 42.39 70.06 11.13 20.67 25.98 18.69 19.63 24.86 30.76 39.85 18.34 33.86 5.13 12.00 10.07 27 I3_AR2 ActiveIntronRegion 0 109.42 140.16 74.17 89.05 174.75 74.34 147.98 108.79 63.99 115.70 23.19 37.12 35.19 26.88 29.39 30.41 37.58 34.05 21.32 71.85 9.16 21.96 10.62 28 I3_AR5 ActiveIntronRegion 0 21.17 9.49 9.80 16.35 47.27 20.17 29.13 8.64 7.82 9.56 0.00 8.66 10.94 0.54 2.90 0.99 4.40 8.62 0.00 21.99 0.00 1.39 0.00 29 I3_AR6 ActiveIntronRegion 0 117.20 42.20 29.26 50.77 103.35 52.26 78.61 37.59 25.32 45.16 7.73 38.97 35.18 15.02 14.87 17.83 23.11 14.09 8.36 35.64 2.20 8.33 2.94 30 I3_AR7 ActiveIntronRegion 0 202.30 75.58 42.28 62.81 155.64 93.37 127.21 56.17 35.92 63.37 12.56 38.97 54.72 24.23 28.29 24.77 28.33 18.63 11.68 50.53 2.20 10.24 2.94 31 I3_AR8 ActiveIntronRegion 0 201.26 251.38 95.50 132.09 215.98 120.74 201.15 122.43 69.12 147.97 28.07 62.58 30.53 28.68 63.47 42.61 54.85 65.80 21.86 110.25 12.97 23.58 17.75 32 E4_Aa NovelBoundary 1 193.15 241.34 152.06 158.45 193.80 123.85 222.98 168.28 69.99 164.21 42.75 99.48 13.64 30.20 86.04 35.29 39.64 105.79 12.24 122.27 36.57 11.14 22.79 33 ER4a ExonRegion 0 151.98 251.68 146.54 175.38 207.64 220.92 185.42 250.16 214.57 273.68 57.74 55.37 27.45 50.68 102.07 63.75 48.94 78.15 37.96 87.59 44.50 98.91 50.39