Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SMEK1 Gene 0 160.02 152.21 73.34 146.69 148.13 76.81 180.30 98.31 86.13 205.79 229.55 353.35 292.78 238.19 165.24 174.90 224.80 96.80 71.28 119.15 64.88 107.22 74.00 2 337238 Transcript 0 2.83 1.30 2.50 2.08 4.83 4.48 2.58 5.44 4.45 16.81 22.00 14.68 14.27 30.83 10.48 20.91 39.38 20.87 11.86 12.85 22.56 4.32 9.43 3 417427 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 428424 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 417249 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 447823 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 IG4_AR1 ActiveIntergenicRegion 0 1.28 0.00 2.42 1.34 3.03 8.31 4.20 1.17 3.34 9.09 22.64 4.85 0.88 28.71 6.31 14.12 22.20 7.49 6.27 5.30 16.65 2.83 7.99 8 ER1a ExonRegion 0 0.69 3.90 6.27 4.41 3.80 11.60 7.73 12.31 13.34 39.57 63.32 29.95 41.25 60.76 22.54 43.67 107.39 40.44 30.78 32.85 65.40 10.39 28.28 9 E1_Ab KnownBoundary 1 0.00 5.59 8.16 6.56 4.16 29.76 4.46 12.94 20.60 64.74 109.45 12.60 50.00 116.49 19.66 15.04 323.70 34.74 18.64 46.40 105.15 5.63 20.15 10 ER1b ExonRegion 1 5.28 1.65 15.25 11.30 1.24 8.13 10.96 18.44 20.39 76.34 130.34 25.41 41.67 197.25 66.69 107.94 271.82 67.38 75.20 78.14 130.43 22.77 69.76 11 E1_Da KnownBoundary 1 14.08 0.00 21.20 32.90 0.00 18.80 16.69 29.66 25.81 77.17 117.98 18.61 69.15 376.72 114.96 340.94 132.59 188.61 227.87 94.21 73.95 57.62 223.48 12 E1a_E1c KnownJunction 0 3.56 0.00 0.00 0.00 0.00 0.00 0.00 4.03 0.00 9.70 2.68 14.10 0.00 31.20 8.90 19.05 10.75 22.18 4.80 5.69 2.29 2.57 0.00 13 ER1c ExonRegion 1 3.36 3.95 4.22 2.85 7.26 13.47 12.48 7.38 10.27 34.39 66.06 9.98 18.28 90.96 26.78 52.09 80.75 56.49 21.08 28.86 45.80 6.81 35.83 14 E1_Ac KnownBoundary 1 15.78 31.38 7.60 10.16 11.21 34.58 29.24 10.35 22.89 69.17 82.34 19.36 41.23 168.11 25.59 75.02 110.80 127.97 41.70 27.29 75.68 12.31 65.22 15 ER1d ExonRegion 1 13.48 39.08 13.67 22.35 29.83 30.69 43.65 23.54 27.76 96.53 108.53 27.14 41.97 182.39 60.79 94.46 153.36 83.17 36.17 75.22 72.71 34.79 45.84 16 E1b_E2a KnownJunction 1 33.41 84.52 29.30 48.38 75.55 50.77 99.59 62.15 69.91 176.46 159.78 104.28 131.65 269.47 71.08 241.39 216.92 130.91 50.45 159.67 86.30 56.40 61.89 17 I1_AR3 ActiveIntronRegion 0 12.00 10.56 12.57 32.57 14.40 1.08 26.37 11.46 9.77 11.77 4.02 24.90 12.99 0.79 13.68 6.82 13.97 7.96 10.38 16.69 4.09 1.99 12.82 18 I1_AR5 ActiveIntronRegion 0 23.52 15.82 13.07 24.53 19.62 3.67 67.82 18.05 9.47 22.56 2.58 23.09 23.45 1.62 13.54 2.97 10.27 0.41 4.96 14.89 0.00 2.08 2.94 19 I1_AR6 ActiveIntronRegion 0 9.66 10.85 6.81 30.15 6.85 1.38 14.16 4.06 1.09 5.49 1.11 12.48 7.14 1.50 11.16 3.34 4.99 1.39 4.28 8.33 2.30 0.83 6.98 20 ER2a ExonRegion 1 51.48 111.45 40.79 67.22 102.73 75.22 157.39 82.47 91.40 203.53 273.92 170.86 172.53 464.96 133.56 342.33 286.23 162.37 70.42 171.69 102.91 75.83 109.39 21 E2a_E3a KnownJunction 0 107.87 137.87 49.17 98.12 136.25 96.93 254.82 118.25 102.43 242.48 423.90 251.48 239.92 483.84 195.69 370.59 348.20 238.56 108.43 225.05 149.62 117.94 124.37 22 E2a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER3a ExonRegion 0 77.28 129.51 61.28 150.95 103.08 75.78 188.52 124.33 132.49 281.37 419.75 343.91 320.91 459.30 160.74 368.45 418.58 234.93 135.94 224.69 157.44 137.07 156.47 24 E3a_E4a KnownJunction 0 77.57 139.58 71.29 155.86 155.18 80.47 263.08 140.72 153.53 367.69 476.96 344.66 393.97 475.72 181.22 317.87 474.80 221.73 135.53 254.71 168.41 181.01 141.19 25 ER4a ExonRegion 0 90.29 258.08 83.39 184.26 178.47 96.47 283.39 128.27 144.76 320.55 400.58 615.21 581.83 408.83 168.47 281.31 375.48 129.42 106.75 195.99 92.74 169.92 112.24 26 E4a_E5a KnownJunction 1 130.47 558.19 67.30 162.15 186.76 140.60 354.23 137.72 126.42 298.76 289.13 1135.72 832.90 365.00 321.65 266.60 213.28 85.02 113.13 177.05 17.24 198.27 86.47 27 ER5a ExonRegion 0 109.41 284.05 80.06 206.86 166.79 110.57 237.28 135.02 124.32 331.66 368.29 865.56 721.72 330.57 229.50 217.35 315.79 95.82 108.79 192.74 53.91 223.50 85.92 28 E5a_E6a KnownJunction 0 183.59 218.12 105.50 262.77 247.11 114.14 304.02 147.25 143.49 383.72 447.96 949.66 789.40 341.58 222.02 262.24 413.18 88.88 130.07 189.71 72.77 293.00 92.53 29 ER6a ExonRegion 0 126.32 353.18 83.33 219.52 284.20 131.64 328.39 148.78 146.42 347.37 367.09 973.09 678.89 340.54 230.66 256.87 342.11 115.87 97.85 227.31 104.70 197.13 115.76 30 E6a_E7a KnownJunction 0 171.22 452.09 87.34 170.71 233.79 169.50 302.43 122.98 141.93 306.66 376.25 823.77 569.61 242.10 176.15 200.80 326.41 157.19 110.69 197.95 98.60 142.98 83.40 31 ER7a ExonRegion 0 143.85 340.86 83.45 169.67 180.05 113.30 272.32 122.47 145.36 298.35 438.01 652.60 401.78 346.78 187.99 271.00 397.29 145.34 113.39 203.47 128.91 168.21 125.60 32 E7_Da KnownBoundary 0 172.48 111.82 50.86 75.45 126.91 58.55 180.71 72.50 56.68 108.09 184.52 244.13 199.18 179.06 127.57 117.83 212.44 51.69 28.80 108.60 54.73 74.15 98.08 33 E7a_E8a KnownJunction 0 116.69 230.49 43.97 124.16 137.86 80.35 162.74 73.69 92.82 225.21 280.97 409.63 223.36 203.72 97.66 203.96 221.97 114.87 41.60 112.94 69.75 83.64 92.70 34 ER7b ExonRegion 0 80.86 68.62 38.21 45.18 82.47 34.84 118.82 53.76 44.43 99.52 156.37 246.45 224.52 176.95 104.52 127.19 188.74 46.24 52.60 97.22 40.23 69.66 67.54 35 E7b_E8a KnownJunction 0 58.53 54.66 25.55 29.87 76.06 20.44 101.09 40.70 48.76 99.60 125.45 222.52 177.59 160.22 119.17 143.72 157.83 46.10 59.20 95.24 27.24 75.81 47.80 36 I7 Intron 0 35.49 21.84 7.71 42.62 37.23 15.19 61.59 20.15 19.52 25.79 26.58 62.97 63.65 22.09 22.30 21.30 35.34 12.06 9.80 26.47 9.01 27.97 15.77 37 I7_AR1 ActiveIntronRegion 0 23.70 15.72 5.71 33.19 31.40 12.47 57.86 16.10 19.28 22.97 25.23 65.48 58.95 23.05 16.36 18.74 30.41 10.86 7.34 23.80 7.97 23.09 14.65 38 I7_AR2 ActiveIntronRegion 0 51.55 38.45 13.33 60.71 51.03 18.97 77.37 31.32 22.87 29.78 32.64 65.94 79.80 24.23 38.63 26.66 46.85 12.14 17.57 32.85 12.28 41.27 21.05 39 I7_SR1 SilentIntronRegion 0 55.62 19.24 6.58 50.53 38.10 19.74 51.45 18.22 15.32 30.53 22.39 49.17 56.69 15.25 19.50 22.86 36.31 16.58 7.09 26.83 7.93 25.93 11.81 40 E8_Aa NovelBoundary 0 134.62 14.60 16.71 76.75 44.57 12.95 88.41 33.64 40.88 53.97 45.80 37.81 25.97 13.71 38.20 68.10 53.67 18.78 14.40 26.14 25.33 34.78 19.38 41 ER8a ExonRegion 0 204.39 203.50 115.28 210.25 212.17 100.33 248.59 149.17 152.49 332.76 378.89 592.09 379.04 365.98 243.79 393.18 412.54 213.50 121.72 199.89 121.99 176.91 156.95 42 E8a_E9a KnownJunction 0 244.27 227.66 133.26 240.13 216.21 94.21 327.33 179.62 160.94 347.65 298.29 456.00 199.99 245.69 200.38 198.67 476.48 88.59 101.27 201.15 113.42 206.42 89.20 43 ER9a ExonRegion 0 249.73 242.06 125.31 242.02 306.46 129.59 354.50 183.32 170.94 349.24 374.25 568.67 408.94 369.23 248.04 339.20 430.27 152.52 127.88 224.58 83.85 212.09 138.82 44 E9a_E10a KnownJunction 0 406.07 275.21 125.34 244.49 332.85 175.01 418.13 208.45 164.15 320.41 336.19 718.58 531.13 366.77 313.25 404.00 373.16 176.30 159.06 247.74 112.43 194.48 164.24 45 ER10a ExonRegion 0 285.52 167.98 125.83 280.25 279.99 119.43 334.88 188.54 166.83 373.57 402.43 613.12 451.78 337.42 287.10 273.14 405.43 120.15 123.25 206.54 67.30 219.48 113.86 46 E10a_E11a KnownJunction 0 271.90 251.34 93.76 215.99 296.77 135.43 393.49 136.04 132.81 356.46 280.18 413.08 441.04 214.61 203.60 176.71 311.55 52.23 55.53 189.07 48.62 160.43 56.00 47 I10_AR1 ActiveIntronRegion 0 22.90 22.74 3.70 13.81 24.28 6.64 31.38 22.28 19.11 23.29 9.49 53.31 58.74 12.50 12.08 18.86 15.22 2.70 6.06 13.39 3.64 16.35 6.68 48 I10_SR2 SilentIntronRegion 0 24.79 14.26 3.06 16.95 19.71 11.26 25.21 20.52 13.25 30.57 18.45 45.51 57.24 19.01 19.74 30.73 34.79 7.40 10.32 17.87 8.11 16.30 16.68 49 I10_AR2 ActiveIntronRegion 0 33.64 10.50 4.99 17.69 27.83 9.17 21.26 24.23 12.88 24.00 9.12 41.44 31.34 17.49 19.42 17.44 19.81 4.60 6.40 14.21 5.66 18.63 7.91 50 I10_SR3 SilentIntronRegion 0 52.09 18.17 4.13 32.00 46.47 11.95 29.32 33.07 20.30 35.22 25.67 61.15 52.07 26.40 24.75 47.55 45.79 15.48 7.52 30.02 14.77 28.31 22.04 51 I10_AR3 ActiveIntronRegion 0 118.92 33.50 13.49 57.72 60.20 14.18 58.01 37.79 25.64 38.73 63.28 100.44 93.47 74.98 53.12 61.08 99.79 19.26 18.60 34.83 31.93 30.24 30.78 52 ER11a ExonRegion 0 295.62 253.50 123.83 311.38 356.91 168.30 378.63 212.03 147.75 402.56 317.68 632.89 595.14 349.01 295.42 217.73 320.46 72.98 88.40 174.08 37.06 199.37 72.57 53 E11a_E12a KnownJunction 1 335.24 230.62 185.59 355.90 373.34 110.45 346.15 208.74 151.59 387.73 243.96 653.76 698.17 374.77 275.17 186.28 207.48 73.79 88.10 166.76 21.81 217.75 47.46 54 ER12a ExonRegion 0 510.76 270.95 189.35 438.67 416.26 141.02 376.80 239.48 187.49 425.82 414.29 759.29 738.24 364.93 383.78 220.21 294.26 96.94 104.16 196.71 33.90 230.51 80.69 55 E12a_E13a KnownJunction 0 820.44 441.50 299.10 519.95 445.76 203.06 401.75 248.29 204.51 424.45 432.27 641.76 644.60 320.44 474.81 228.32 319.03 73.62 93.56 215.53 38.67 258.28 94.50 56 I12_AR1 ActiveIntronRegion 0 22.22 3.73 15.11 16.81 29.43 0.00 6.62 10.37 8.65 8.03 5.80 22.37 26.58 1.89 15.47 0.00 3.30 2.77 0.00 10.28 0.00 6.60 0.00 57 ER13a ExonRegion 0 578.03 345.14 221.10 428.78 414.38 211.08 443.60 226.78 182.55 398.69 407.36 706.20 722.81 327.84 445.48 232.91 325.80 112.20 105.58 210.72 50.52 227.84 94.68 58 E13_Ab KnownBoundary 0 569.36 326.32 202.03 412.24 506.88 211.70 505.57 248.70 196.00 431.97 445.22 898.79 711.48 289.07 479.51 284.63 312.48 130.45 142.69 242.44 50.16 280.63 134.62 59 ER13b ExonRegion 0 471.72 263.52 212.54 421.96 478.59 212.09 475.83 224.50 169.82 428.24 429.75 930.24 674.56 425.87 501.48 359.83 368.18 204.34 146.34 222.43 72.06 250.05 155.14 60 E13_Da NovelBoundary 0 72.09 32.82 31.19 53.51 55.77 8.01 54.01 39.97 23.55 32.18 0.00 63.47 26.30 14.72 43.51 8.29 8.32 10.28 3.67 23.97 0.00 24.55 0.00 61 E13a_E14a KnownJunction 1 637.00 315.73 282.10 503.00 600.85 224.87 491.53 228.41 190.51 507.23 386.20 993.32 961.63 632.59 854.32 534.05 417.02 252.58 229.65 280.09 101.50 265.51 219.38 62 I13 Intron 0 67.07 16.46 21.75 35.70 49.51 15.48 34.91 35.45 14.05 29.65 11.18 38.64 50.64 8.98 15.06 13.07 8.78 7.34 4.78 16.98 2.80 14.94 3.40 63 I13_SR1 SilentIntronRegion 0 67.37 16.54 21.85 35.87 49.73 15.55 35.07 35.61 14.11 29.78 11.22 38.82 50.87 9.02 15.13 13.13 8.82 7.38 4.80 17.06 2.81 15.01 3.41 64 E14_Aa NovelBoundary 0 131.28 27.03 33.68 55.07 46.10 31.23 28.44 44.36 23.76 37.58 19.85 80.88 53.57 17.54 31.89 24.27 22.63 13.35 22.59 8.88 8.53 23.64 26.21 65 ER14a ExonRegion 0 557.31 360.03 249.16 399.01 328.54 173.40 336.71 265.89 170.05 462.55 471.00 740.76 513.71 544.28 611.49 408.45 475.61 285.23 203.54 225.53 210.18 231.58 180.55 66 E14_Da NovelBoundary 0 105.72 44.27 4.70 44.68 32.09 19.70 12.37 29.16 14.50 33.85 15.16 54.62 32.79 9.95 15.58 34.01 12.62 18.16 39.15 30.94 17.17 3.12 23.99 67 E14a_E15a KnownJunction 0 644.48 326.19 277.81 361.36 383.28 170.92 368.14 263.70 138.80 422.78 462.43 544.23 291.54 481.43 418.44 344.27 350.26 233.63 121.23 190.98 147.09 184.25 150.24 68 I14_AR1 ActiveIntronRegion 0 42.06 29.97 6.52 12.31 18.77 2.14 14.64 6.31 2.66 7.79 3.53 10.36 22.68 3.75 8.23 2.93 4.60 2.11 2.38 5.95 0.34 2.47 2.25 69 E15_Aa NovelBoundary 0 75.87 27.36 14.99 17.38 43.97 2.90 37.89 21.73 6.25 7.23 5.21 13.50 6.82 7.95 5.19 7.78 0.00 11.81 8.56 5.82 0.00 9.12 3.67 70 ER15a ExonRegion 0 171.18 80.84 37.40 57.17 63.73 44.51 80.40 40.10 21.76 63.97 50.50 53.00 27.55 66.02 61.27 54.87 40.65 44.45 19.73 29.29 15.00 24.61 23.15 71 E15_Da KnownBoundary 0 9.85 9.14 6.53 15.42 27.84 2.61 2.16 1.68 4.77 12.25 7.58 6.60 33.76 2.53 0.00 0.00 4.77 1.78 0.00 2.88 0.00 0.00 0.00 72 ER15b ExonRegion 0 1.00 0.99 1.05 3.24 2.27 0.88 2.05 0.50 0.18 0.87 0.00 4.15 2.99 0.51 0.87 0.00 0.00 0.06 0.00 0.83 0.00 0.21 0.00 73 ER15c ExonRegion 0 4.23 0.00 1.23 1.82 10.70 1.83 0.00 0.00 0.00 1.15 0.00 0.00 1.56 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74 IG3_AR2 ActiveIntergenicRegion 0 8.67 7.19 7.28 18.40 16.73 3.36 10.99 11.75 7.64 11.68 4.17 21.55 8.12 2.92 4.34 4.81 3.20 2.18 3.09 7.54 0.00 4.49 2.53