Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C14orf118 Gene 0 25.79 64.19 28.18 35.79 36.82 36.88 52.70 33.67 49.64 103.23 92.75 145.63 79.58 114.22 39.34 86.48 126.70 99.43 61.98 108.85 83.43 67.57 71.38 2 425830 Transcript 0 6.76 2.63 4.90 8.03 6.09 0.00 10.87 3.91 8.54 8.17 6.47 18.04 7.56 9.86 16.52 16.88 15.40 4.26 8.94 4.82 6.27 12.04 5.30 3 261530 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 312858 Transcript 0 1.76 2.74 4.44 0.76 4.48 5.09 7.65 6.14 2.89 15.29 4.71 5.59 3.49 5.36 0.02 8.92 2.02 7.67 4.24 7.33 0.77 2.39 8.29 5 336993 Transcript 0 0.00 0.00 1.71 8.92 0.00 0.00 0.00 4.64 11.52 53.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.48 0.00 0.00 0.00 0.00 0.00 6 ER1a ExonRegion 0 4.37 11.00 3.05 1.31 3.98 9.72 14.53 1.71 3.92 10.28 18.97 0.00 2.53 20.39 13.40 8.96 24.58 8.66 9.98 26.12 22.68 13.13 17.00 7 E1a_E2a KnownJunction 0 33.04 38.22 11.41 8.16 12.22 19.65 45.93 14.33 23.55 53.13 57.07 0.00 6.66 17.42 43.39 54.17 77.14 41.54 30.21 35.92 57.51 26.70 40.80 8 I1_AR2 ActiveIntronRegion 0 5.93 0.79 3.97 1.41 1.63 0.57 5.27 3.59 6.95 4.43 5.31 25.88 16.06 7.42 2.72 5.52 19.37 4.52 2.75 4.23 2.21 17.33 10.21 9 E2_Ab NovelBoundary 0 9.04 11.31 2.84 4.20 0.00 4.77 13.43 14.25 16.44 20.23 20.74 26.11 0.00 4.59 0.00 14.44 25.99 22.47 11.29 13.36 22.49 16.96 10.24 10 ER2a ExonRegion 1 16.16 27.55 6.13 5.45 5.35 13.67 29.49 11.47 11.79 31.28 50.78 3.54 4.26 13.88 29.01 37.56 57.92 35.44 22.30 26.69 53.69 18.94 36.31 11 ER2b ExonRegion 0 19.97 58.38 36.44 37.76 30.36 29.93 50.17 36.34 54.57 109.82 109.01 88.27 61.05 130.68 51.97 95.14 149.72 118.51 61.36 135.13 117.33 60.39 77.21 12 E2a_E3a KnownJunction 0 31.34 110.51 44.68 62.63 71.56 44.80 108.38 64.49 99.62 152.58 179.57 233.78 126.45 231.50 88.76 172.69 231.98 175.85 82.45 196.35 108.30 106.61 107.56 13 ER3a ExonRegion 0 26.67 84.25 37.82 45.04 61.79 44.10 69.09 53.58 80.28 118.68 164.80 190.10 90.70 173.03 47.94 145.77 201.41 161.75 90.12 153.71 124.42 101.48 78.52 14 E3a_E4a KnownJunction 0 30.38 78.34 44.29 35.89 52.21 31.97 72.34 52.78 61.05 135.04 182.15 247.88 119.31 141.56 22.99 125.61 191.30 147.49 86.87 155.70 147.83 124.49 88.09 15 ER4a ExonRegion 0 43.67 87.43 45.41 46.83 53.65 37.78 80.02 64.91 70.81 148.29 146.76 301.42 144.65 205.39 63.42 166.76 217.78 182.18 105.06 160.63 124.17 112.13 117.35 16 E4a_E5a KnownJunction 0 39.41 78.41 39.00 40.12 44.82 41.00 89.65 51.18 53.65 163.19 107.50 319.00 138.30 192.60 76.64 169.36 208.41 155.33 88.38 160.62 100.94 89.46 131.03 17 ER5a ExonRegion 1 40.66 81.34 46.40 41.87 38.36 40.50 81.74 36.43 67.04 149.48 105.08 329.09 107.05 173.03 63.94 133.19 184.27 159.28 72.98 148.38 99.06 82.40 99.48 18 E5_Da KnownBoundary 0 17.48 6.18 10.02 18.05 3.57 0.00 12.90 9.24 10.79 17.81 14.48 12.60 8.28 11.89 13.35 24.35 35.53 12.23 0.00 12.08 12.29 18.19 8.19 19 E5a_E6a KnownJunction 0 50.08 99.06 34.98 51.97 64.26 76.94 80.86 40.38 66.35 132.21 93.44 203.32 92.20 148.27 81.46 112.02 162.13 182.35 71.25 152.12 124.79 67.05 112.42 20 ER5b ExonRegion 0 6.76 2.63 4.90 8.03 6.09 0.00 10.87 3.91 8.54 8.17 6.47 18.04 7.56 9.86 16.52 16.88 15.40 4.26 8.94 4.82 6.27 12.04 5.30 21 E5_Db NovelBoundary 0 24.82 30.98 25.34 15.08 3.40 10.62 31.36 12.57 14.87 24.20 17.37 29.26 14.45 24.13 10.01 23.84 30.11 10.86 16.85 6.52 11.98 14.08 20.49 22 I5 Intron 0 10.44 7.87 11.50 16.61 12.62 3.93 18.18 8.91 9.00 14.86 6.19 26.15 23.69 10.78 8.96 11.25 19.13 3.32 9.65 8.14 6.34 10.77 11.62 23 I5_AR1 ActiveIntronRegion 0 10.45 7.88 11.51 16.62 12.63 3.93 18.20 8.92 9.00 14.87 6.19 26.17 23.71 10.79 8.97 11.26 19.15 3.32 9.65 8.15 6.34 10.78 11.63 24 E6_Aa NovelBoundary 0 20.15 29.47 12.12 22.04 10.36 2.90 27.25 9.20 6.22 12.68 4.95 20.26 6.82 7.71 4.45 0.00 8.32 2.49 4.14 8.44 12.11 9.37 12.21 25 ER6a ExonRegion 0 41.40 69.18 24.58 51.05 93.60 79.46 69.89 37.09 56.07 144.84 138.36 193.47 127.51 163.19 79.60 142.29 194.62 181.19 84.35 136.83 105.59 91.28 113.61 26 E6_Da NovelBoundary 0 31.26 40.19 20.87 50.78 97.62 49.40 71.72 34.79 40.07 122.73 118.71 145.55 131.00 116.61 70.09 132.70 168.21 138.91 58.73 121.95 65.98 64.85 97.91 27 E6a_E6b KnownJunction 0 0.00 0.00 1.71 8.92 0.00 0.00 0.00 4.64 11.52 53.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.48 0.00 0.00 0.00 0.00 0.00 28 E6b_E7a KnownJunction 0 0.00 3.29 1.71 1.56 0.00 0.00 15.59 6.41 1.68 10.02 4.95 6.00 0.00 12.18 0.00 3.42 0.00 6.09 0.00 6.14 0.00 2.63 3.24 29 E6b_E8a KnownJunction 0 48.82 72.75 26.52 33.40 79.29 73.14 95.88 26.86 46.67 107.47 150.62 219.52 128.56 190.24 50.44 166.02 146.98 150.89 153.89 143.88 98.47 107.28 132.14 30 ER6b ExonRegion 0 40.21 50.84 19.85 49.88 105.42 81.05 82.62 42.52 54.10 148.41 167.00 163.65 137.89 187.42 67.31 174.17 187.49 179.60 112.12 130.64 101.81 100.84 120.40 31 ER6c ExonRegion 0 36.12 52.87 29.57 43.43 78.49 64.06 84.12 39.75 52.62 164.24 155.66 187.61 133.51 193.05 64.21 164.26 151.84 178.00 118.07 134.89 95.93 94.31 117.07 32 ER7a ExonRegion 0 2.17 2.03 4.87 0.72 5.28 4.31 7.35 6.31 3.74 18.58 3.87 4.76 4.46 3.90 0.07 6.84 1.49 8.22 4.62 6.91 2.31 1.72 5.58 33 E7a_E9a KnownJunction 0 3.11 2.89 6.74 0.00 8.15 10.96 0.00 5.71 3.24 17.27 5.32 6.00 6.01 0.00 0.00 16.49 4.58 8.71 8.09 8.95 0.00 2.82 16.05 34 ER8a ExonRegion 0 36.29 71.84 33.91 54.66 59.50 62.62 71.52 39.41 51.54 152.29 152.56 205.85 162.70 189.28 69.84 164.17 161.56 187.19 110.45 159.07 107.30 92.32 154.25 35 E8_Da NovelBoundary 0 2.82 12.43 4.79 25.54 3.31 10.22 14.57 1.56 10.68 7.12 2.42 31.51 15.10 5.24 0.00 8.72 17.11 3.73 4.80 17.32 2.29 5.45 7.94 36 E8a_E9a KnownJunction 0 50.45 97.68 31.78 65.86 50.17 50.43 62.45 38.86 41.09 159.69 131.45 210.67 79.22 209.55 92.34 188.24 193.74 180.74 110.97 161.07 136.03 69.68 165.69 37 E8a_E10a NovelJunction 0 0.00 0.00 1.83 3.40 0.00 0.00 5.65 1.56 3.24 9.43 2.05 18.46 0.00 7.42 4.45 4.10 16.64 5.89 4.80 2.49 5.13 6.18 7.51 38 I8 Intron 0 10.73 13.40 7.79 16.65 12.32 2.79 15.61 7.18 8.01 12.35 4.25 14.71 13.46 4.98 6.29 7.41 9.62 4.08 5.65 9.17 4.47 8.80 6.20 39 I8_AR2 ActiveIntronRegion 0 15.77 18.00 11.48 22.28 15.58 2.56 19.43 8.40 10.29 19.89 5.42 19.10 24.44 3.09 8.39 7.61 5.38 4.29 6.68 11.40 3.58 9.22 4.10 40 I8_AR3 ActiveIntronRegion 0 12.73 13.82 13.85 33.89 11.90 3.36 18.68 10.78 9.63 16.53 6.03 13.92 9.79 6.15 12.10 10.88 13.81 6.23 7.50 13.91 8.65 10.35 8.45 41 E9_Aa NovelBoundary 0 43.19 40.32 34.12 53.27 11.29 10.33 24.60 33.31 17.22 42.66 11.95 30.91 6.17 2.35 0.00 34.35 33.47 11.19 36.42 22.56 11.68 30.13 19.72 42 ER9a ExonRegion 0 43.29 96.45 34.77 58.30 51.12 35.76 56.08 38.99 64.02 158.34 156.77 208.27 82.68 184.39 81.64 141.00 197.86 162.02 96.01 152.72 128.81 97.32 114.56 43 E9_Da NovelBoundary 0 0.00 11.51 34.59 39.66 27.08 0.00 25.44 17.17 11.69 32.58 5.05 18.16 27.43 0.00 16.32 12.30 21.97 12.64 4.33 17.83 2.59 0.00 0.00 44 E9a_E10a KnownJunction 0 45.64 88.93 25.25 46.55 24.19 28.39 49.06 26.82 75.87 135.12 142.67 180.51 140.90 150.75 90.12 132.53 175.88 139.49 102.12 110.07 156.91 99.32 104.31 45 ER10a ExonRegion 0 32.48 99.13 27.11 39.72 25.15 36.37 43.01 41.94 68.44 135.36 134.86 164.34 109.25 157.44 73.08 114.94 167.48 146.71 74.87 134.98 132.11 76.83 99.29 46 E10_Da NovelBoundary 0 26.89 74.53 13.07 14.68 24.70 6.30 15.63 16.43 12.50 35.00 44.01 42.31 59.57 80.41 24.11 26.40 51.80 32.08 7.53 36.50 25.02 24.49 24.58 47 E10a_E11a KnownJunction 0 32.52 54.73 31.90 23.37 47.96 48.89 65.36 20.58 68.60 143.55 90.02 157.40 103.24 63.51 22.50 93.48 95.56 189.11 45.27 119.72 95.38 46.11 107.39 48 I10 Intron 0 15.74 34.35 11.61 16.17 25.33 6.89 27.89 19.49 19.18 36.95 29.06 60.13 51.21 33.25 19.40 25.13 30.80 17.41 19.70 28.08 18.35 32.85 20.50 49 I10_AR1 ActiveIntronRegion 0 13.21 28.47 5.69 11.68 22.99 5.34 28.53 17.68 18.24 36.24 26.66 68.20 49.46 39.88 16.63 21.21 30.19 9.76 12.36 27.57 12.20 29.02 21.37 50 I10_AR2 ActiveIntronRegion 0 23.29 51.83 19.00 25.17 38.39 10.76 37.95 29.62 28.36 54.21 44.90 79.78 71.97 45.20 31.04 39.00 44.55 28.88 32.83 35.96 30.89 45.85 29.10 51 I10_AR3 ActiveIntronRegion 0 5.64 10.85 4.35 5.19 6.08 1.87 11.43 4.53 5.12 9.71 5.26 22.68 19.04 8.85 2.65 5.74 9.18 4.85 4.16 16.31 2.75 15.27 6.00 52 E11_Aa NovelBoundary 0 18.15 39.07 9.49 7.29 21.65 8.29 29.01 21.97 9.06 31.78 7.21 7.65 19.97 21.37 4.45 14.87 13.09 20.10 3.86 29.79 28.79 20.39 27.91 53 ER11a ExonRegion 0 37.22 62.47 25.41 21.86 39.53 58.95 55.48 24.41 55.79 112.23 73.73 118.97 77.98 106.63 24.64 97.92 135.47 165.39 90.72 126.61 117.27 74.65 93.66 54 E11_Da KnownBoundary 0 31.86 75.32 25.40 38.52 68.76 40.03 73.97 27.89 72.94 118.49 54.96 129.19 61.52 131.09 23.86 90.23 123.61 136.46 93.56 107.57 70.43 87.32 83.74 55 ER11b ExonRegion 0 24.74 66.15 22.13 34.62 37.40 41.11 52.09 29.70 44.11 90.31 68.37 154.15 81.28 82.07 20.13 57.53 91.85 57.39 51.70 83.46 50.76 65.36 53.50 56 IG17_AR1 ActiveIntergenicRegion 0 25.92 61.34 20.26 31.41 30.57 32.47 48.34 22.96 37.97 73.65 43.07 92.51 58.57 52.49 19.00 38.25 60.98 45.22 40.05 75.55 31.99 46.67 45.41 57 IG17_AR2 ActiveIntergenicRegion 0 49.07 100.90 43.12 61.29 46.50 45.41 70.07 37.00 47.73 91.20 54.19 80.96 67.16 58.83 17.52 47.84 73.85 60.77 52.43 87.48 46.74 54.06 56.92 58 IG17_SR2 SilentIntergenicRegion 0 14.24 17.56 8.91 10.78 10.70 21.17 13.60 6.44 0.67 21.06 6.68 24.80 10.23 16.09 7.12 23.51 10.50 7.73 5.79 21.47 16.83 6.82 8.54 59 IG17_AR3 ActiveIntergenicRegion 0 17.75 47.62 14.66 26.28 30.33 35.99 44.71 24.38 45.39 82.82 43.92 107.41 108.46 56.12 11.83 43.95 61.79 33.99 41.00 64.45 45.94 63.11 47.86 60 IG17_SR3 SilentIntergenicRegion 0 20.05 31.35 3.47 7.38 23.93 27.35 35.20 14.21 14.31 25.87 20.08 22.73 14.98 37.49 5.64 39.71 34.20 7.60 17.52 26.60 38.87 24.02 21.29 61 IG17_AR4 ActiveIntergenicRegion 0 42.23 60.30 31.55 53.17 50.29 57.20 62.36 36.94 47.39 92.43 46.99 83.52 55.22 49.71 18.09 49.14 56.54 43.26 41.28 67.18 46.41 51.25 50.52 62 IG17_SR4 SilentIntergenicRegion 0 30.04 82.35 29.15 55.50 51.17 25.90 49.58 24.56 35.88 63.79 23.86 67.79 72.43 19.59 14.73 17.61 20.31 5.87 14.91 50.34 6.97 42.26 21.55 63 IG17_AR5 ActiveIntergenicRegion 0 63.46 96.69 50.86 87.01 83.38 77.22 75.89 55.09 46.80 112.29 21.59 93.16 76.15 31.36 31.45 25.34 13.34 9.40 23.89 36.74 17.16 53.75 22.88 64 IG17_AR6 ActiveIntergenicRegion 0 5.77 2.13 0.00 3.30 1.76 1.28 0.92 2.70 2.97 5.09 12.76 3.74 0.00 5.07 6.72 6.23 7.96 2.51 2.23 2.43 4.60 1.46 3.42