Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PSEN1 Gene 0 81.56 108.48 54.03 85.51 81.92 80.68 63.38 68.78 75.14 146.82 80.16 70.79 82.95 89.49 85.42 94.10 75.21 68.34 42.79 54.47 70.10 103.63 79.49 2 394157 Transcript 0 5.43 4.80 3.95 6.49 6.85 0.56 7.14 6.09 2.11 5.49 0.40 3.71 2.38 0.39 4.92 5.46 2.68 2.17 3.27 5.05 0.32 1.28 3.62 3 324501 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 357710 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 261970 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.91 0.00 0.00 0.00 3.12 0.00 6 344094 Transcript 0 0.03 0.38 0.34 0.75 0.95 0.68 0.51 1.43 0.34 2.68 1.43 1.98 0.00 1.17 1.17 1.64 4.27 0.52 0.00 0.79 4.10 1.66 1.09 7 394164 Transcript 0 6.39 2.94 5.15 5.73 4.70 4.14 6.47 5.83 4.73 6.25 2.42 2.29 6.94 8.03 10.59 7.32 5.37 8.23 4.59 9.20 8.57 2.22 9.80 8 406768 Transcript 0 5.15 3.91 3.02 4.66 4.31 0.92 4.16 5.15 3.39 4.94 0.49 1.62 3.05 1.06 4.89 3.99 2.95 3.93 2.39 3.33 2.13 0.81 5.04 9 IG14 Intergenic 0 16.62 31.33 11.02 28.70 22.73 12.13 16.01 16.74 14.80 22.11 6.75 13.41 8.49 4.43 7.58 6.00 6.56 4.60 5.95 16.52 1.76 7.34 5.00 10 IG14_AR1 ActiveIntergenicRegion 0 56.10 83.11 40.64 87.04 79.50 43.54 55.70 57.26 53.61 70.42 38.56 57.58 28.28 21.74 30.09 22.35 23.61 16.27 20.54 50.28 6.00 31.44 12.96 11 IG14_SR1 SilentIntergenicRegion 0 21.32 47.13 9.44 36.89 28.52 23.67 21.73 14.52 14.53 27.44 2.16 7.99 2.93 5.04 6.02 4.91 5.00 8.54 10.10 17.64 3.22 6.48 7.08 12 IG14_AR2 ActiveIntergenicRegion 0 25.06 74.38 18.89 58.06 40.97 16.95 23.27 31.88 23.93 44.07 3.51 16.23 13.29 3.44 8.20 4.63 5.86 3.44 4.39 24.53 0.60 9.18 6.27 13 ER1a ExonRegion 0 6.52 6.26 0.83 3.11 6.42 21.71 11.39 1.31 1.68 9.27 5.72 0.00 0.00 11.43 9.63 8.68 19.28 2.73 7.26 6.04 12.69 11.08 15.51 14 ER1b ExonRegion 1 24.72 46.01 14.27 14.71 51.22 146.16 83.22 9.34 21.09 58.01 63.66 2.36 6.74 59.14 59.79 97.63 89.48 47.50 48.52 24.98 96.12 96.46 96.49 15 E1a_E3a KnownJunction 0 13.48 9.80 27.02 31.40 22.07 34.30 21.86 35.16 54.17 82.06 45.01 5.85 26.78 9.83 18.54 76.39 46.66 90.74 8.56 3.26 24.65 16.29 37.99 16 ER2a ExonRegion 0 12.78 5.87 10.29 11.45 9.40 8.27 12.93 11.66 9.47 12.50 4.84 4.57 13.87 11.46 21.17 14.63 10.74 16.46 9.18 18.40 17.14 4.44 15.25 17 E2_Da NovelBoundary 1 87.13 24.73 33.97 30.80 6.88 2.73 30.21 33.56 19.82 26.81 2.53 29.26 47.56 9.06 17.06 15.72 17.39 20.93 40.75 26.14 41.02 8.70 30.22 18 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 19 I2 Intron 0 16.85 9.64 11.70 12.19 16.82 6.38 15.52 13.70 9.75 11.58 5.11 15.18 23.72 5.79 11.95 15.71 11.38 6.67 8.80 10.34 5.80 6.48 17.34 20 I2_AR1 ActiveIntronRegion 0 31.20 12.37 27.23 20.19 18.12 11.16 17.48 22.30 15.93 17.43 8.12 21.33 39.73 11.28 19.90 31.84 15.84 19.45 20.48 17.87 17.18 5.00 34.48 21 I2_SR1 SilentIntronRegion 0 14.57 8.70 7.24 8.90 14.79 3.44 14.09 8.33 5.18 6.77 2.42 7.61 21.93 1.81 5.77 4.34 3.44 1.83 4.98 3.55 0.92 3.48 7.66 22 I2_AR2 ActiveIntronRegion 0 36.53 17.94 14.24 9.88 22.64 2.58 13.71 13.83 9.65 15.74 8.42 17.94 21.13 4.58 17.82 17.10 14.35 7.42 6.11 11.15 6.47 5.06 21.06 23 I2_AR4 ActiveIntronRegion 0 4.23 0.00 4.90 3.82 18.73 0.00 5.38 3.34 3.46 3.36 3.87 5.77 5.94 4.98 10.83 9.11 3.30 5.05 0.00 3.12 0.00 6.25 36.81 24 I2_AR5 ActiveIntronRegion 0 7.31 0.00 6.13 9.66 18.49 0.00 6.62 5.50 7.41 4.69 3.87 12.20 9.38 7.09 9.76 17.29 3.30 7.39 7.82 4.26 1.00 7.96 40.58 25 I2_AR6 ActiveIntronRegion 0 6.08 1.53 8.58 14.91 13.04 0.00 8.44 8.64 7.41 11.47 6.77 23.27 6.16 5.89 12.51 27.68 2.06 8.31 12.74 6.25 2.89 9.51 34.32 26 I2_AR7 ActiveIntronRegion 0 13.55 4.47 8.33 13.77 11.24 0.00 9.53 8.64 7.41 10.09 9.66 29.44 9.85 7.96 18.57 26.75 3.30 9.05 28.99 11.28 4.63 6.25 17.91 27 I2_SR2 SilentIntronRegion 0 3.65 7.02 8.13 5.15 14.64 4.28 11.14 10.09 6.58 7.86 4.81 9.92 17.26 5.85 11.77 17.99 14.05 3.22 5.45 6.06 4.89 6.56 11.82 28 I2_AR8 ActiveIntronRegion 0 6.35 8.13 15.93 10.90 25.42 3.67 10.81 25.06 12.35 6.12 7.73 36.80 37.52 9.74 16.44 32.69 41.81 3.70 3.19 14.89 13.22 10.42 21.05 29 I2_AR9 ActiveIntronRegion 1 6.35 8.29 11.41 13.21 19.55 1.27 9.37 25.93 12.26 8.12 6.39 38.63 50.15 5.75 16.51 31.55 38.09 3.70 3.19 13.26 12.04 13.30 19.43 30 I2_AR10 ActiveIntronRegion 1 4.59 10.85 16.34 14.54 16.95 7.34 8.83 27.08 12.35 14.53 13.53 24.53 53.15 2.71 22.73 20.80 25.31 2.16 3.19 14.89 12.85 17.02 22.51 31 I2_AR11 ActiveIntronRegion 1 2.65 9.80 17.90 14.75 21.69 7.34 20.62 26.17 11.56 17.20 12.98 24.12 60.80 4.23 22.69 15.29 20.98 3.10 4.21 15.96 6.06 13.17 21.82 32 I2_AR12 ActiveIntronRegion 0 4.23 14.13 15.81 11.18 24.75 4.13 26.15 26.19 10.07 19.73 9.28 21.00 41.04 5.68 16.54 19.17 12.05 2.40 3.19 8.19 5.73 7.29 28.34 33 I2_AR13 ActiveIntronRegion 0 7.33 10.09 20.41 9.28 24.08 3.53 17.98 20.41 11.50 17.16 6.62 18.32 22.01 3.56 14.51 28.24 10.16 0.71 0.00 6.87 3.31 1.60 17.62 34 I2_AR14 ActiveIntronRegion 0 15.73 14.95 17.79 22.84 29.28 12.40 28.08 19.35 17.38 21.86 6.28 29.02 39.92 7.22 13.32 21.12 18.41 5.79 9.72 14.47 4.07 10.88 19.90 35 I2_SR3 SilentIntronRegion 0 40.00 18.30 12.62 28.35 27.83 25.31 28.99 21.09 11.49 21.91 4.45 17.32 38.46 14.45 15.09 40.72 23.11 24.21 19.11 35.53 11.02 18.75 53.45 36 I2_AR15 ActiveIntronRegion 0 41.93 15.38 11.33 29.90 26.42 19.94 27.39 19.99 10.65 25.16 7.49 18.67 43.09 21.11 18.68 39.38 15.47 23.56 20.90 34.84 9.92 17.32 49.37 37 I2_AR16 ActiveIntronRegion 0 13.30 0.00 0.00 0.00 3.25 0.00 21.28 0.00 0.00 1.15 0.00 0.00 4.69 3.48 0.83 16.98 7.07 0.00 1.59 1.82 2.20 0.45 14.68 38 I2_AR17 ActiveIntronRegion 0 22.31 12.92 9.91 14.17 16.18 6.82 14.98 23.55 17.69 8.74 7.19 10.74 19.44 4.29 10.50 14.28 10.75 6.13 6.90 17.81 5.81 8.40 15.48 39 E3_Aa NovelBoundary 0 38.90 5.33 9.91 25.30 35.48 0.00 5.87 22.76 11.57 24.63 7.37 12.00 12.99 6.71 10.75 31.36 8.70 16.91 21.93 14.96 12.11 14.57 20.40 40 ER3a ExonRegion 0 24.00 25.89 23.61 32.28 27.21 34.19 25.24 41.19 61.88 109.99 80.57 53.80 49.70 50.76 34.21 80.10 79.06 73.37 27.93 38.09 114.24 55.90 67.51 41 E3a_E4a KnownJunction 0 48.53 40.58 29.74 55.50 37.95 18.11 27.73 70.81 102.02 189.86 188.63 114.79 128.24 96.18 50.44 100.32 150.63 107.41 72.10 78.87 200.59 140.22 140.34 42 I3_AR1 ActiveIntronRegion 1 5.99 1.76 0.00 2.40 12.93 2.55 1.84 1.49 0.00 3.07 0.00 6.02 19.16 0.00 6.98 1.86 1.85 1.85 7.94 7.72 0.00 5.93 6.97 43 E4_Aa NovelBoundary 0 18.74 9.47 17.42 7.03 3.40 2.90 3.97 15.85 3.30 10.69 2.42 0.00 6.33 4.65 4.45 4.27 0.00 7.01 4.52 3.07 0.00 0.00 17.24 44 ER4a ExonRegion 0 24.44 40.58 33.76 73.55 50.99 69.37 42.67 80.62 120.52 190.25 153.23 99.44 107.39 151.98 100.37 218.80 152.82 169.78 89.86 101.13 154.19 158.49 186.48 45 E4_Da NovelBoundary 0 10.52 17.50 11.53 21.84 44.23 32.48 18.95 17.37 30.96 34.92 14.69 18.61 25.49 7.12 24.85 34.09 15.80 36.19 8.19 23.71 28.79 28.29 17.16 46 E4a_E6a KnownJunction 0 18.52 14.54 25.49 33.70 79.88 103.58 51.05 30.15 45.34 98.23 78.28 133.24 95.12 65.87 49.94 80.83 82.09 62.22 35.77 51.13 87.72 65.83 63.25 47 E4b_E6a KnownJunction 0 3.78 33.81 9.11 25.54 68.93 101.76 33.43 44.52 53.59 74.11 46.70 79.98 38.63 39.32 37.21 45.71 60.78 82.99 8.09 35.47 55.66 48.99 43.02 48 ER4b ExonRegion 0 5.47 27.62 9.09 25.21 49.95 83.74 30.89 33.70 54.86 69.01 39.14 64.94 42.60 34.24 33.36 60.19 51.16 55.12 6.37 32.45 61.89 44.45 36.71 49 I4_SR1 SilentIntronRegion 0 17.82 7.61 6.69 8.90 11.11 3.97 11.46 11.13 4.71 8.50 1.55 5.18 10.15 1.56 7.63 9.12 7.24 4.06 5.37 6.13 2.51 2.41 9.59 50 I4_AR1 ActiveIntronRegion 0 21.62 11.09 8.32 14.89 28.20 5.92 17.92 17.52 6.48 11.22 3.10 5.92 27.49 1.26 13.85 12.94 10.65 3.17 1.77 9.34 3.45 1.57 10.35 51 ER5a ExonRegion 0 10.31 7.82 6.04 7.26 8.62 1.83 8.31 10.30 6.79 9.87 0.97 3.24 6.09 2.11 9.79 7.99 5.89 7.86 4.78 6.65 4.26 1.63 10.08 52 E5a_E6a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 ER6a ExonRegion 0 42.35 77.94 40.74 83.01 85.24 135.06 87.69 96.66 107.74 218.79 135.57 137.54 104.94 155.46 117.47 142.60 152.28 130.31 75.22 113.30 149.91 200.42 116.17 54 E6a_E7a KnownJunction 0 102.76 138.26 52.57 102.42 96.69 95.06 109.26 144.25 107.41 249.63 159.62 138.04 199.01 262.41 212.87 182.35 162.13 139.78 144.57 186.13 201.83 268.57 184.73 55 ER7a ExonRegion 0 63.70 126.88 50.64 100.21 74.94 96.38 77.95 97.09 120.41 219.03 146.40 122.32 127.26 191.63 123.12 137.99 135.80 116.99 60.57 118.59 133.60 204.90 139.76 56 E7_Da KnownBoundary 0 0.00 0.00 3.19 23.07 8.40 0.00 12.01 9.28 4.28 3.01 0.00 0.00 0.00 0.00 4.45 8.03 13.18 1.62 0.00 8.82 5.56 0.00 0.00 57 E7a_E8a KnownJunction 0 38.53 135.44 49.08 139.34 138.03 115.16 101.18 119.11 125.81 225.00 173.15 142.25 114.60 221.03 132.64 206.44 138.10 124.57 103.34 98.94 125.04 260.43 136.32 58 ER7b ExonRegion 0 5.43 4.80 3.95 6.49 6.85 0.56 7.14 6.09 2.11 5.49 0.40 3.71 2.38 0.39 4.92 5.46 2.68 2.17 3.27 5.05 0.32 1.28 3.62 59 ER8a ExonRegion 0 59.26 150.75 57.70 139.13 163.65 150.40 130.47 109.66 146.32 257.46 185.64 159.11 159.60 253.29 123.18 213.56 167.67 125.38 81.37 94.93 116.08 268.80 143.85 60 E8a_E9a KnownJunction 1 77.94 187.14 78.26 146.17 218.08 160.08 159.47 113.24 173.23 255.75 186.42 159.50 155.18 229.27 83.57 179.10 173.91 98.04 98.26 89.42 52.88 199.01 153.31 61 ER9a ExonRegion 0 80.24 182.07 58.42 146.48 132.35 145.36 118.32 102.96 131.03 242.82 164.15 157.41 183.29 184.59 123.45 167.22 155.55 115.61 79.46 105.79 122.16 184.57 153.66 62 E9_Da NovelBoundary 0 35.56 11.45 12.30 43.22 26.99 13.74 22.83 14.62 12.53 17.57 0.00 12.30 20.29 4.77 29.67 24.01 0.00 21.31 19.20 5.75 8.09 8.02 12.04 63 E9a_E10a KnownJunction 0 37.19 145.43 58.48 102.98 113.75 117.60 93.89 76.07 105.84 219.11 99.29 70.07 74.02 115.72 87.27 124.92 122.11 69.93 74.54 90.06 72.09 102.99 113.02 64 I9 Intron 0 11.31 13.87 7.57 16.75 15.22 5.91 12.84 14.42 10.94 20.94 2.36 7.68 19.55 2.24 6.94 4.86 5.93 3.31 3.67 8.04 3.50 8.97 5.62 65 I9_SR2 SilentIntronRegion 0 13.41 19.59 6.43 19.53 14.41 5.52 12.37 16.86 10.91 25.23 2.03 9.67 24.36 2.17 6.83 3.30 5.16 1.37 1.62 7.85 2.82 10.79 3.96 66 I9_AR1 ActiveIntronRegion 0 16.31 15.32 7.33 22.84 17.29 8.78 11.89 22.93 17.91 34.09 3.28 9.21 31.66 2.53 6.94 4.44 9.88 5.93 4.67 11.73 2.03 13.91 5.31 67 ER10a ExonRegion 0 81.48 199.85 63.61 125.34 126.90 133.44 112.44 90.61 112.01 215.47 137.10 133.34 154.91 154.55 112.24 144.46 140.80 121.90 52.45 97.59 102.46 150.08 164.90 68 E10a_E11a KnownJunction 0 92.09 253.51 79.36 157.32 195.84 187.28 172.01 138.67 134.14 264.51 121.40 200.02 236.02 182.41 159.10 216.01 188.13 153.58 53.08 102.84 141.10 203.54 207.18 69 ER11a ExonRegion 1 94.68 172.55 79.48 154.80 156.85 165.61 126.20 138.71 117.61 250.55 115.33 155.81 217.95 198.25 140.69 194.49 162.54 146.55 58.07 101.42 136.55 159.28 178.93 70 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.46 0.00 0.00 0.00 3.15 4.65 0.00 71 E11a_E13a KnownJunction 0 145.66 158.06 101.92 173.74 231.49 195.00 159.34 142.36 101.94 286.46 142.30 115.39 115.58 220.32 186.79 242.59 126.13 178.46 67.58 128.54 139.80 152.35 174.91 72 E11a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.91 0.00 0.00 0.00 3.12 0.00 73 ER12a ExonRegion 0 0.09 1.13 1.01 2.25 2.85 2.03 1.53 4.30 1.02 4.81 4.29 5.93 0.00 3.50 3.50 4.91 9.36 1.55 0.00 2.36 9.15 0.32 3.26 74 E12_Da NovelBoundary 0 3.48 6.51 0.00 10.06 0.00 2.90 0.00 8.95 8.04 11.95 11.58 0.00 6.82 4.77 0.00 36.57 13.56 13.31 9.32 7.54 11.18 2.27 15.19 75 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76 ER13a ExonRegion 0 120.13 163.55 103.59 136.33 121.82 159.75 113.45 127.34 136.10 290.40 158.72 125.68 117.55 193.24 147.58 210.44 170.39 153.61 92.08 97.10 172.45 182.74 190.27 77 E13a_E14a KnownJunction 0 162.18 248.57 129.65 168.31 196.35 140.15 146.58 129.71 184.03 373.89 208.37 145.10 102.92 288.36 221.65 252.41 160.82 202.75 138.07 103.80 204.92 204.15 200.09 78 ER14a ExonRegion 0 147.48 210.86 125.42 180.61 152.50 175.29 136.66 129.95 179.01 366.39 194.87 117.81 108.70 184.39 161.25 186.47 141.86 135.49 115.10 96.39 155.78 214.81 162.82 79 E14a_E15a KnownJunction 0 172.10 203.58 156.56 182.96 227.59 256.67 157.13 175.51 196.76 382.86 208.53 163.55 191.38 174.41 201.25 174.23 186.16 147.66 96.66 92.49 140.73 202.87 180.88 80 ER15a ExonRegion 0 246.68 300.19 148.41 221.76 212.14 184.85 139.68 162.05 171.96 343.49 171.92 154.27 197.16 183.60 206.25 192.63 138.92 129.79 85.67 104.57 127.62 232.82 148.00 81 IG15_AR1 ActiveIntergenicRegion 0 44.84 86.47 40.78 73.71 65.59 77.25 40.71 50.38 44.66 100.48 32.88 41.36 44.50 37.82 36.88 36.16 30.11 36.85 25.81 35.04 20.35 62.84 39.09