Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ATXN3 Gene 0 45.07 59.51 32.83 66.60 68.27 42.46 54.32 47.69 54.30 59.18 33.45 61.01 70.30 36.50 41.73 38.42 33.34 27.19 29.92 42.93 27.94 60.24 44.97 2 447800 Transcript 0 12.25 6.51 6.07 21.75 34.58 5.77 11.46 9.32 10.95 9.76 6.41 0.00 7.85 3.22 7.20 12.00 3.24 19.33 21.62 8.29 9.94 4.77 15.47 3 429774 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 1.72 1.73 0.00 0.00 2.42 0.00 6.49 0.00 4.45 4.02 3.65 0.00 4.24 3.26 0.00 6.25 0.00 4 393287 Transcript 0 0.00 5.26 0.00 6.73 0.00 0.00 0.00 0.00 2.89 1.67 2.68 0.00 13.64 7.24 0.00 6.92 0.00 0.00 0.00 0.00 0.00 2.51 4.35 5 359819 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 340660 Transcript 0 47.86 12.96 5.50 5.83 20.46 7.89 40.50 7.27 7.90 10.42 20.90 0.00 0.00 19.72 10.88 0.00 9.35 6.26 9.41 6.07 2.78 11.14 8.45 7 359366 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 393289 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1a ExonRegion 1 115.79 79.97 23.91 26.35 92.93 54.72 93.89 23.05 35.45 40.63 94.69 5.77 17.40 62.38 59.80 87.85 86.14 55.23 69.60 57.95 56.75 74.13 86.68 10 E1a_E2a KnownJunction 1 343.54 176.28 53.25 84.47 314.35 170.07 247.97 63.21 96.50 108.28 212.05 52.22 36.85 174.41 101.49 171.92 211.78 91.40 69.46 142.09 159.45 209.91 158.43 11 E1a_E3a KnownJunction 0 47.86 12.96 5.50 5.83 20.46 7.89 40.50 7.27 7.90 10.42 20.90 0.00 0.00 19.72 10.88 0.00 9.35 6.26 9.41 6.07 2.78 11.14 8.45 12 I1_AR1 ActiveIntronRegion 0 2.31 4.55 4.75 6.69 1.82 0.75 4.69 7.73 4.08 6.35 2.27 6.39 5.74 1.65 4.09 5.01 3.15 9.29 13.72 11.71 2.40 3.07 5.61 13 ER2a ExonRegion 0 63.88 38.95 39.76 65.17 64.88 29.49 46.80 61.26 69.85 87.84 146.55 53.55 58.13 65.85 38.35 77.24 108.99 59.53 68.65 72.29 96.12 81.86 78.90 14 E2a_E3a KnownJunction 0 17.11 18.55 46.36 85.74 23.34 2.78 10.42 82.85 89.55 90.69 138.46 63.77 120.93 173.17 115.95 156.20 97.34 83.61 96.66 148.48 86.36 212.97 179.86 15 E2a_E4a KnownJunction 0 0.00 5.26 0.00 6.73 0.00 0.00 0.00 0.00 2.89 1.67 2.68 0.00 13.64 7.24 0.00 6.92 0.00 0.00 0.00 0.00 0.00 2.51 4.35 16 E2a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.72 1.73 0.00 0.00 2.42 0.00 6.49 0.00 4.45 4.02 3.65 0.00 4.24 3.26 0.00 6.25 0.00 17 ER3a ExonRegion 0 42.28 33.76 57.21 86.01 45.25 11.78 28.77 81.66 85.74 80.64 93.94 68.02 77.33 123.40 92.45 100.99 67.04 70.79 59.32 103.07 46.52 155.48 137.76 18 E3_Da NovelBoundary 0 14.60 10.26 6.30 31.56 42.36 29.53 38.42 24.60 6.57 17.54 4.69 0.00 0.00 0.00 0.00 26.40 0.00 16.13 23.34 21.60 16.49 19.29 17.67 19 E3a_E4a KnownJunction 0 34.38 54.79 56.89 77.05 84.89 25.21 38.29 68.68 60.65 46.87 59.17 75.47 74.51 45.79 43.14 59.47 44.04 32.54 20.42 73.19 24.65 65.15 62.23 20 E3a_E5a NovelJunction 1 3.41 2.96 3.67 5.49 3.74 0.00 0.00 6.98 4.48 4.30 0.00 39.31 20.94 2.24 10.75 13.76 3.65 2.57 4.42 0.00 0.00 5.63 26.29 21 I3 Intron 0 14.33 17.55 9.58 14.81 11.35 3.89 11.43 9.87 8.56 12.14 3.45 7.23 12.53 2.11 4.81 4.64 5.53 8.14 11.02 9.89 7.13 9.07 8.74 22 I3_AR1 ActiveIntronRegion 0 7.88 7.85 4.41 7.76 19.85 4.76 35.77 1.20 5.70 6.23 2.55 9.14 19.15 0.97 3.51 8.96 2.34 4.41 10.35 8.27 5.57 1.48 7.71 23 I3_AR2 ActiveIntronRegion 0 6.29 9.77 2.02 9.01 6.92 0.68 7.86 7.62 3.48 11.44 2.14 5.65 4.52 0.00 2.27 2.22 3.71 7.14 1.18 7.09 3.26 10.01 11.94 24 I3_SR2 SilentIntronRegion 0 19.08 16.53 9.83 16.56 13.45 6.15 11.69 16.36 6.94 15.92 3.02 6.02 15.19 1.20 5.12 8.26 10.49 8.83 18.50 13.36 11.48 12.69 12.95 25 I3_AR3 ActiveIntronRegion 0 19.88 27.28 15.10 26.69 14.08 4.37 13.81 14.23 17.21 16.65 6.80 9.78 20.65 4.74 7.55 6.65 9.76 15.91 15.44 13.31 14.32 10.67 9.34 26 I3_SR3 SilentIntronRegion 0 16.67 20.13 11.54 12.36 10.14 3.89 9.99 9.64 7.80 10.84 2.21 7.40 10.70 1.59 5.19 2.97 2.56 4.72 10.27 9.39 3.05 10.21 5.06 27 E4_Aa NovelBoundary 0 21.56 15.52 12.18 25.07 22.92 2.90 14.44 17.50 4.60 9.21 2.37 18.01 11.85 0.00 0.00 10.60 0.00 12.02 9.60 5.82 0.00 6.25 11.10 28 ER4a ExonRegion 0 37.41 85.06 46.83 97.75 154.45 76.74 145.25 66.16 71.15 91.53 77.56 110.60 110.11 53.48 39.91 49.83 64.02 25.05 25.71 67.17 26.91 84.04 42.55 29 E4_Da NovelBoundary 0 9.26 20.19 34.65 30.97 0.00 5.79 14.53 8.63 8.30 19.45 4.63 25.21 13.64 2.30 0.00 15.64 7.48 12.77 20.14 18.09 0.00 22.47 17.07 30 E4a_E5a KnownJunction 0 34.67 156.35 49.64 87.04 195.33 119.02 183.85 55.78 66.81 108.63 80.34 144.50 140.90 91.41 40.67 35.03 63.77 23.09 38.97 50.17 17.85 106.97 47.46 31 I4 Intron 0 15.46 17.56 10.43 12.95 11.02 2.68 11.43 8.55 6.11 10.21 5.39 6.19 8.98 2.46 6.32 11.05 3.95 11.23 14.38 11.02 6.15 5.81 5.46 32 I4_AR1 ActiveIntronRegion 0 15.54 17.65 10.48 13.02 11.07 2.69 11.49 8.60 6.14 10.27 5.42 6.21 9.02 2.47 6.36 11.11 3.97 11.29 14.46 11.08 6.18 5.84 5.49 33 E5_Aa NovelBoundary 0 34.23 67.49 15.32 20.14 34.63 13.17 23.36 9.32 7.90 9.21 0.00 5.85 19.80 2.12 0.00 3.85 4.39 4.56 0.00 5.69 2.84 20.02 19.97 34 ER5a ExonRegion 0 93.47 144.54 53.79 95.87 105.95 52.88 117.44 71.12 89.20 110.51 78.56 151.79 161.49 85.16 62.23 42.59 79.96 30.36 37.23 71.39 23.71 105.05 60.79 35 E5_Da NovelBoundary 0 12.30 50.32 22.26 43.95 25.64 0.00 12.59 13.39 11.17 19.45 10.74 12.30 0.00 0.00 8.90 6.49 7.76 8.95 8.38 20.07 5.75 21.31 4.35 36 E5a_E6a KnownJunction 0 296.57 125.24 64.01 125.86 72.41 49.69 109.08 100.30 93.66 116.74 97.50 166.55 253.55 119.49 71.08 54.94 90.88 35.07 28.52 84.24 45.22 127.12 68.55 37 I5 Intron 0 17.24 25.10 13.83 20.58 19.98 4.40 12.59 16.56 12.49 17.56 2.69 12.84 16.52 3.10 6.81 6.24 4.23 5.89 9.98 8.52 2.28 12.20 5.04 38 I5_AR1 ActiveIntronRegion 0 1.71 4.94 0.00 0.00 6.50 0.00 3.22 0.00 0.00 0.00 3.13 16.70 6.92 3.25 3.59 0.00 0.00 0.00 2.58 0.00 5.32 0.00 0.00 39 I5_SR2 SilentIntronRegion 0 14.04 25.80 12.06 23.13 20.76 5.23 12.88 17.00 12.49 16.46 2.07 12.15 16.06 2.27 5.34 6.93 3.63 4.84 10.90 10.84 1.40 8.95 5.35 40 I5_AR3 ActiveIntronRegion 0 35.64 36.95 20.16 27.66 26.96 5.32 14.65 19.47 14.37 24.09 3.66 15.84 19.22 2.95 9.94 6.97 5.07 9.16 8.88 8.35 4.62 18.59 7.19 41 I5_AR4 ActiveIntronRegion 0 9.07 16.85 12.78 13.93 11.09 2.36 8.13 12.88 10.78 11.72 3.04 12.19 13.20 5.15 7.02 3.40 5.66 6.18 8.19 5.78 1.89 10.11 2.10 42 I5_SR3 SilentIntronRegion 0 17.72 22.16 16.66 15.46 24.44 4.19 18.80 21.49 16.32 26.80 2.94 10.73 22.91 3.39 8.36 8.93 4.19 6.07 13.72 6.48 1.68 22.72 6.71 43 E6_Aa NovelBoundary 0 74.83 44.60 56.09 33.20 38.37 7.95 39.61 35.28 43.72 43.44 18.37 18.16 6.66 0.00 4.45 7.60 8.04 9.91 17.98 15.21 9.14 32.94 0.00 44 ER6a ExonRegion 0 145.15 113.58 59.88 101.95 88.85 55.43 80.07 86.99 102.94 122.56 88.19 162.16 249.53 104.33 69.99 77.51 107.39 29.29 56.43 70.99 59.35 122.86 77.35 45 E6_Da NovelBoundary 0 64.38 61.50 45.03 43.15 41.34 11.53 31.49 48.75 47.19 35.32 6.16 13.50 12.17 2.47 8.90 16.06 4.77 21.22 3.58 26.72 8.46 22.96 8.19 46 E6a_E7a KnownJunction 1 94.54 55.58 39.74 112.21 78.27 64.62 80.24 78.57 86.72 115.45 60.17 133.84 217.19 81.29 45.61 31.19 102.01 33.20 33.79 69.67 55.97 94.67 89.20 47 I6_SR1 SilentIntronRegion 0 13.07 13.78 8.16 9.47 10.21 5.98 10.04 6.21 7.76 10.03 2.91 7.41 12.10 1.63 4.69 6.56 4.81 6.65 10.23 8.76 5.96 8.05 4.86 48 E7_Aa NovelBoundary 0 10.52 11.58 8.46 17.85 3.99 2.90 3.80 14.46 7.52 5.45 2.63 6.30 14.77 7.36 4.45 8.20 4.02 11.81 3.95 15.40 11.06 8.45 0.00 49 ER7a ExonRegion 0 115.29 96.11 64.00 125.00 100.33 67.29 97.01 85.25 88.37 101.01 106.50 179.62 227.59 104.97 84.20 87.17 107.22 81.65 49.67 80.77 105.70 102.95 98.72 50 E7_Da NovelBoundary 0 17.04 35.19 5.85 17.58 22.67 0.00 5.61 6.00 9.92 4.67 5.16 0.00 0.00 4.94 8.90 4.27 0.00 4.39 0.00 11.76 2.97 0.00 8.45 51 E7a_E8a KnownJunction 0 92.68 106.76 48.61 146.04 183.19 56.10 100.34 98.95 93.43 94.98 116.82 190.56 240.24 142.33 130.05 84.17 115.01 58.49 94.03 108.79 153.64 109.12 128.73 52 ER8a ExonRegion 0 61.57 75.49 73.55 128.80 99.69 58.89 77.70 85.61 99.57 115.38 135.58 164.29 205.63 130.00 96.28 110.86 132.27 102.83 66.61 100.67 139.98 96.57 96.10 53 E8a_E9a KnownJunction 0 76.24 113.20 67.95 149.43 154.67 85.92 126.84 70.69 116.41 104.84 138.46 165.35 166.55 147.39 112.99 130.99 123.61 103.51 93.37 96.32 149.32 121.79 101.75 54 ER9a ExonRegion 0 75.89 83.08 62.43 103.20 114.97 76.09 83.68 52.32 80.27 93.32 95.57 118.46 164.78 115.68 80.97 93.33 92.94 79.09 69.52 88.29 109.48 89.12 72.87 55 E9_Da NovelBoundary 0 16.89 27.23 3.40 15.55 11.80 2.44 10.20 9.94 12.82 6.63 2.47 25.21 0.00 0.00 0.00 6.32 0.00 5.14 4.80 5.18 2.47 8.21 4.35 56 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 E9a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 E9a_E12a KnownJunction 0 73.64 43.87 27.20 25.04 106.03 91.59 62.80 22.10 25.46 49.96 40.59 37.21 103.56 55.51 77.26 50.33 51.71 40.46 58.07 17.45 74.26 65.40 36.54 59 I9 Intron 0 5.90 8.10 3.64 7.28 4.26 1.46 5.28 1.03 6.59 4.09 1.54 5.68 3.08 0.53 3.26 7.11 0.00 2.57 19.04 8.48 0.88 3.32 3.51 60 I9_SR1 SilentIntronRegion 0 6.44 8.57 3.87 7.81 4.71 1.61 5.56 1.13 7.27 4.37 1.70 6.27 3.40 0.59 3.60 7.84 0.00 2.63 20.60 9.19 0.97 3.66 3.62 61 E10a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 ER10a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 I10 Intron 0 27.16 31.72 16.77 31.01 18.06 3.85 9.67 15.10 14.46 19.10 4.28 9.41 15.02 3.04 6.57 12.17 6.21 22.48 16.56 10.59 8.29 8.99 15.92 64 I10_SR1 SilentIntronRegion 0 27.16 31.72 16.77 31.01 18.06 3.85 9.67 15.10 14.46 19.10 4.28 9.41 15.02 3.04 6.57 12.17 6.21 22.48 16.56 10.59 8.29 8.99 15.92 65 E11_Aa NovelBoundary 0 253.23 188.98 370.45 365.79 244.82 142.30 294.57 324.36 309.75 268.00 42.91 19.81 61.85 17.48 31.65 206.44 172.42 296.06 183.72 246.08 89.76 66.68 163.47 66 ER11a ExonRegion 0 0.00 0.00 0.14 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.05 0.16 0.08 0.00 0.00 0.00 0.00 0.00 0.12 0.00 67 E11_Da NovelBoundary 0 37.71 35.85 6.03 45.08 36.42 14.08 33.87 13.88 13.40 15.71 15.74 6.15 0.00 12.48 31.15 16.83 31.04 6.92 23.15 27.23 12.36 14.51 25.10 68 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 I11_AR1 ActiveIntronRegion 1 0.00 3.31 8.06 12.80 0.55 1.29 1.74 9.35 6.66 12.23 0.07 23.65 31.61 1.17 4.89 11.56 0.00 3.39 4.54 6.50 0.00 4.44 2.07 70 I11_AR2 ActiveIntronRegion 0 4.97 7.18 3.22 11.95 24.67 3.60 8.82 10.10 10.83 10.73 3.03 3.65 9.40 1.84 3.45 2.91 1.94 6.86 2.50 5.43 3.46 2.45 6.34 71 ER12a ExonRegion 0 47.86 65.38 30.72 34.67 63.18 36.32 38.04 29.63 34.95 47.41 51.18 62.21 62.39 56.43 39.59 54.40 45.21 35.39 25.70 31.68 78.83 51.83 48.34 72 E12_Da KnownBoundary 0 24.08 23.48 16.32 36.49 24.53 8.12 9.72 25.22 26.74 17.25 7.37 0.00 6.01 2.35 18.91 11.54 0.00 33.66 18.26 2.75 7.97 12.00 11.61 73 E12a_E13a KnownJunction 1 26.38 53.94 26.17 35.79 32.00 13.40 28.31 30.60 30.70 55.12 55.12 75.32 13.47 55.51 18.42 39.48 59.56 27.98 11.39 20.84 44.29 36.50 38.50 74 ER12b ExonRegion 0 12.25 6.51 6.07 21.75 34.58 5.77 11.46 9.32 10.95 9.76 6.41 0.00 7.85 3.22 7.20 12.00 3.24 19.33 21.62 8.29 9.94 4.77 15.47 75 E12_Db NovelBoundary 0 12.30 18.15 24.51 40.09 29.37 13.69 19.48 12.53 16.35 12.92 2.58 25.96 0.00 0.00 5.56 10.25 4.77 9.78 13.46 5.82 0.00 5.69 11.61 76 I12 Intron 0 22.54 20.64 5.32 10.47 13.80 2.59 8.26 6.86 3.83 4.69 1.45 3.75 6.17 4.96 4.02 4.70 1.92 2.60 7.14 6.38 1.83 4.16 6.35 77 I12_AR1 ActiveIntronRegion 0 20.51 10.68 0.00 0.00 19.99 6.88 5.92 0.00 0.00 0.00 7.25 0.00 11.59 6.09 11.01 0.00 2.48 0.00 7.17 7.95 0.00 1.56 10.84 78 I12_SR1 SilentIntronRegion 0 22.90 22.00 6.01 11.85 13.09 2.07 8.59 7.76 4.33 5.30 0.73 4.24 5.53 4.84 3.16 5.32 1.86 2.95 7.18 6.21 2.07 4.51 5.80 79 E13_Aa NovelBoundary 0 9.48 14.80 17.89 26.57 10.87 14.14 31.13 23.21 24.22 21.17 2.05 18.91 7.47 9.42 0.00 15.72 0.00 10.32 16.94 12.34 0.00 16.66 27.83 80 ER13a ExonRegion 0 39.93 57.59 30.25 64.27 65.19 41.69 51.21 45.86 51.79 55.13 21.74 53.89 60.15 27.83 38.45 31.74 23.19 21.48 25.97 38.36 18.29 56.20 39.82 81 IG9 Intergenic 0 23.58 13.02 14.70 16.39 19.53 7.21 10.05 12.96 14.65 16.79 2.44 6.11 10.38 3.75 5.66 6.14 3.14 9.85 9.62 12.34 6.65 6.63 7.15 82 IG9_AR5 ActiveIntergenicRegion 0 15.51 3.73 0.00 0.00 27.24 8.50 3.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.76 0.00 0.00 0.00 5.92 4.01 1.93 2.67 83 IG9_SR4 SilentIntergenicRegion 0 12.76 13.79 13.97 18.34 21.17 6.82 9.09 13.82 13.37 12.60 0.97 5.69 11.60 3.27 5.26 4.75 2.31 11.30 10.40 10.92 7.64 6.12 7.93 84 IG9_AR4 ActiveIntergenicRegion 0 114.63 21.82 29.58 34.37 31.38 14.50 20.30 25.60 29.55 25.50 3.81 8.64 19.36 5.42 8.21 6.90 3.83 15.69 14.83 19.14 10.57 19.73 12.17 85 IG9_SR3 SilentIntergenicRegion 0 22.79 10.35 7.26 23.17 19.67 15.42 6.69 11.95 9.00 5.04 3.44 7.71 21.03 3.91 5.29 1.80 1.85 3.27 3.71 2.41 3.71 11.68 0.23 86 IG9_AR1 ActiveIntergenicRegion 0 10.59 9.50 12.74 6.41 11.79 4.34 9.15 7.80 13.57 24.86 4.96 6.44 4.32 4.43 6.09 9.58 5.00 6.53 7.76 14.56 3.92 2.47 5.02