Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FOXN3 Gene 0 80.81 130.14 41.14 221.78 110.66 109.98 56.38 69.98 69.65 163.40 93.15 76.68 75.82 5.14 12.62 15.88 96.13 127.37 52.22 56.11 65.27 82.86 82.47 2 345097 Transcript 0 15.78 40.88 18.98 71.69 29.03 40.53 12.61 34.24 37.82 78.08 44.83 38.74 27.65 2.47 6.68 7.56 62.35 135.13 16.24 34.94 45.28 24.34 28.96 3 444927 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 261302 Transcript 0 1.41 3.39 5.72 15.45 5.35 6.11 3.97 8.07 11.94 17.20 20.62 4.33 6.25 1.62 3.87 1.98 27.51 24.02 2.12 19.15 21.30 9.03 13.70 5 ER1a ExonRegion 0 0.00 0.00 0.05 0.00 0.00 0.02 0.00 0.00 0.00 0.02 0.11 1.70 0.26 0.00 0.00 0.00 0.62 0.28 0.00 0.02 0.00 0.00 1.40 6 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.02 1.78 0.00 0.00 0.00 0.00 0.00 7 ER1b ExonRegion 0 2.40 11.62 10.35 14.74 2.39 4.47 4.72 2.46 11.10 22.10 23.98 3.87 8.67 0.60 1.07 4.76 21.57 22.31 6.56 17.95 27.67 10.82 13.01 8 E1a_E2b KnownJunction 0 0.00 13.75 15.88 26.17 12.65 15.90 12.72 22.84 26.85 58.40 46.75 24.31 20.13 5.47 0.00 8.46 58.53 62.14 8.47 56.44 47.51 16.41 37.22 9 ER2a ExonRegion 0 1.41 3.39 5.72 15.45 5.35 6.11 3.97 8.07 11.94 17.20 20.62 4.33 6.25 1.62 3.87 1.98 27.51 24.02 2.12 19.15 21.30 9.03 13.70 10 ER2b ExonRegion 0 35.98 64.91 60.45 155.74 59.69 81.26 48.33 89.32 128.11 251.13 201.79 82.18 101.86 11.56 25.99 36.28 238.73 362.74 112.00 117.58 165.10 127.14 186.90 11 E2_Da NovelBoundary 0 3.78 22.50 25.22 9.86 7.81 0.00 8.44 26.66 5.12 4.30 12.85 0.00 0.00 0.00 4.45 0.00 20.94 4.60 4.42 3.26 2.97 0.00 4.01 12 E2a_E3a KnownJunction 0 40.97 139.51 56.06 227.51 63.67 121.41 65.36 97.72 139.99 321.38 252.22 167.75 134.41 15.07 21.63 58.87 255.91 246.36 87.44 152.83 146.72 147.88 187.97 13 E2a_E4a NovelJunction 0 0.00 0.00 0.00 4.13 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.80 4.80 0.00 2.97 0.00 0.00 14 I2_AR4 ActiveIntronRegion 0 11.76 1.36 3.00 16.96 8.03 0.00 15.45 11.14 7.82 8.03 1.93 17.32 9.38 0.00 0.00 0.00 1.10 4.72 3.19 7.80 3.92 4.17 2.94 15 I2_AR8 ActiveIntronRegion 0 9.68 18.85 5.10 35.19 20.99 6.37 19.81 17.31 16.92 27.03 1.12 6.14 6.12 0.00 2.76 1.29 11.58 16.52 4.54 12.81 2.65 0.72 9.86 16 I2_AR9 ActiveIntronRegion 0 20.46 17.62 4.90 19.53 0.89 7.34 15.00 12.10 13.59 17.01 0.00 0.00 4.69 0.00 0.00 8.92 3.30 12.93 3.19 12.41 4.41 6.25 2.94 17 I2_SR6 SilentIntronRegion 0 28.50 16.98 4.96 22.86 18.63 8.37 11.81 12.17 12.96 17.57 0.59 1.08 7.73 0.00 1.24 0.71 8.51 10.09 5.67 12.60 2.33 2.70 8.76 18 I2_AR10 ActiveIntronRegion 0 27.34 14.80 2.45 28.66 23.41 7.64 19.20 21.70 6.14 18.61 0.00 0.00 4.56 0.00 0.00 2.97 7.15 14.01 11.59 13.36 0.00 1.62 2.04 19 I2_AR11 ActiveIntronRegion 0 21.85 10.40 2.11 22.00 11.14 2.26 13.61 15.31 5.69 8.51 0.00 0.00 11.13 0.00 0.27 0.90 3.22 7.31 6.67 4.95 3.79 1.94 1.71 20 I2_AR12 ActiveIntronRegion 0 10.83 21.47 5.94 24.99 13.74 6.39 8.17 15.99 12.14 8.60 0.37 2.85 3.41 0.00 1.28 1.31 5.65 14.94 6.20 7.20 4.23 0.08 6.32 21 I2_AR13 ActiveIntronRegion 0 23.25 26.71 6.66 37.59 20.92 5.73 11.22 18.69 13.87 20.04 0.83 3.05 3.67 0.00 1.38 0.35 4.43 19.29 4.96 7.05 2.75 3.76 7.03 22 I2_SR8 SilentIntronRegion 0 23.18 19.91 7.08 23.44 14.05 1.84 15.88 7.73 10.52 13.28 0.46 0.85 1.94 0.00 0.00 1.78 2.92 17.05 7.62 8.68 2.80 1.19 5.97 23 I2_AR15 ActiveIntronRegion 0 0.90 17.21 8.39 25.89 24.70 3.67 10.69 6.85 12.35 13.01 1.93 6.49 0.00 0.00 1.00 2.17 5.84 10.87 5.27 8.10 3.81 0.24 16.38 24 I2_AR16 ActiveIntronRegion 0 16.67 13.62 8.97 38.19 13.98 2.94 11.35 14.51 15.32 20.04 2.07 5.36 2.67 0.00 0.74 1.21 7.51 16.34 9.49 10.45 5.06 1.30 8.99 25 I2_AR17 ActiveIntronRegion 0 14.24 24.19 9.36 38.92 10.65 6.64 11.26 19.50 17.97 27.79 3.33 4.50 7.17 0.00 1.51 2.00 5.72 21.52 7.41 11.46 3.97 1.27 9.83 26 I2_AR18 ActiveIntronRegion 0 76.92 45.02 15.89 54.58 38.00 6.72 14.15 22.42 15.74 28.18 0.00 1.63 5.90 0.21 1.25 0.00 7.56 11.36 4.86 6.50 1.68 2.23 4.04 27 I2_AR19 ActiveIntronRegion 0 20.45 22.20 8.33 27.44 17.00 1.97 9.71 9.91 19.43 15.14 0.69 2.55 4.57 0.00 0.18 1.33 2.95 10.03 3.99 5.90 1.38 0.93 5.52 28 ER3a ExonRegion 0 63.74 106.43 55.13 234.02 84.41 118.37 77.70 99.34 164.09 326.00 276.73 220.46 154.09 12.42 25.31 47.10 272.29 341.87 128.88 138.81 153.65 193.17 224.88 29 E3_Da NovelBoundary 0 13.41 0.00 1.18 5.73 4.24 8.29 26.85 2.34 12.70 2.95 0.00 18.01 6.82 0.00 0.00 0.00 4.77 1.70 9.22 11.82 3.15 0.00 0.00 30 E3a_E4a KnownJunction 0 38.82 101.56 57.51 213.63 129.54 115.16 88.94 86.42 147.37 276.65 240.85 182.01 141.55 17.42 32.26 39.48 256.29 271.48 110.12 144.26 141.90 170.35 203.08 31 I3_AR2 ActiveIntronRegion 0 7.12 2.88 4.19 17.44 13.43 5.21 16.37 6.82 12.65 9.53 3.59 12.21 11.00 0.00 2.03 1.26 7.67 12.51 2.99 11.59 1.85 2.14 2.62 32 I3_AR10 ActiveIntronRegion 0 19.37 11.35 5.99 38.58 15.86 5.38 12.50 12.60 13.14 17.41 1.67 4.43 6.02 0.15 0.86 2.74 10.45 15.55 7.88 10.29 2.03 0.36 8.62 33 I3_SR8 SilentIntronRegion 0 19.15 15.55 5.25 29.99 17.74 5.27 13.84 13.64 12.78 15.70 0.81 4.77 5.73 0.00 0.81 1.46 8.45 8.41 4.02 7.39 2.32 0.22 6.49 34 I3_AR11 ActiveIntronRegion 0 9.71 5.69 3.78 32.87 15.83 6.75 7.04 17.94 11.54 15.75 0.33 4.10 4.92 0.00 1.73 1.89 8.51 22.13 2.07 8.08 1.76 0.00 11.18 35 I3_SR10 SilentIntronRegion 0 9.61 6.86 5.08 25.06 8.45 4.35 8.33 17.19 15.46 10.96 0.75 1.01 0.92 0.00 0.72 1.41 5.63 16.74 3.02 5.49 1.57 0.47 9.19 36 ER4a ExonRegion 0 22.63 89.57 51.03 191.62 72.53 105.12 60.90 78.18 111.83 230.47 163.82 210.01 140.99 13.82 23.52 33.24 218.32 293.11 76.84 114.89 154.43 116.16 155.33 37 E4_Da NovelBoundary 0 28.45 14.80 3.28 10.82 26.40 9.88 4.24 13.02 8.65 9.64 0.00 6.00 0.00 0.00 4.45 3.93 4.21 11.52 17.98 0.00 11.06 0.00 30.05 38 E4a_E5a KnownJunction 0 13.93 29.01 14.13 69.72 24.02 35.04 27.56 15.20 37.07 70.81 43.17 68.87 73.86 2.71 10.14 7.78 63.02 99.36 22.21 27.48 36.70 69.81 58.73 39 E4a_E6a KnownJunction 0 31.56 81.76 37.91 143.37 58.06 81.03 25.22 68.47 75.64 156.15 89.55 75.77 55.03 4.94 13.35 15.12 124.08 269.99 32.47 69.86 90.57 48.68 56.51 40 I4_SR2 SilentIntronRegion 0 18.78 8.95 4.94 24.93 15.75 10.36 18.03 9.24 6.30 9.14 1.89 5.75 8.04 0.12 1.46 1.80 12.38 14.18 6.38 8.05 3.98 0.40 10.05 41 I4_AR4 ActiveIntronRegion 0 17.44 20.25 4.20 41.96 24.10 9.62 17.35 11.62 8.77 15.29 8.96 18.07 14.99 0.72 1.69 0.82 9.61 2.71 3.72 6.58 1.13 3.00 4.32 42 I4_AR5 ActiveIntronRegion 1 8.47 7.12 2.45 24.99 2.68 3.67 15.89 12.10 3.09 9.18 0.00 21.65 4.69 0.00 2.90 0.00 4.40 9.24 14.33 10.64 2.20 2.08 8.81 43 I4_SR6 SilentIntronRegion 0 8.05 10.34 2.42 23.55 2.68 3.06 15.96 9.89 4.05 7.20 0.00 8.30 8.34 0.00 1.13 0.00 2.93 8.06 17.87 7.51 3.43 1.85 4.08 44 I4_SR9 SilentIntronRegion 0 25.74 25.10 9.95 22.26 19.04 4.31 16.37 14.03 5.23 8.43 0.96 6.70 2.34 0.00 0.58 1.05 3.76 8.90 6.53 6.49 0.84 0.29 5.39 45 I4_AR9 ActiveIntronRegion 0 27.66 41.99 10.26 28.36 17.76 2.04 24.88 15.26 1.53 10.29 1.15 9.17 8.75 0.00 0.00 0.89 7.74 4.05 2.79 2.41 1.73 0.00 7.01 46 I4_AR10 ActiveIntronRegion 0 10.04 12.55 5.85 28.42 10.46 2.61 18.37 8.86 6.77 13.38 1.15 11.48 6.87 0.14 1.21 0.71 10.57 4.25 6.82 5.80 0.00 0.25 4.53 47 I4_AR12 ActiveIntronRegion 0 19.89 10.86 1.74 18.62 14.43 2.80 9.65 4.97 3.83 5.31 0.93 6.75 5.97 0.18 0.12 0.54 5.35 4.89 3.22 4.66 0.94 0.40 2.70 48 ER5a ExonRegion 0 11.00 17.56 13.57 43.65 32.11 34.54 14.36 18.75 22.06 54.46 59.57 81.01 50.88 7.55 9.98 12.25 79.82 91.80 23.99 28.98 37.53 78.04 76.17 49 E5a_E6a KnownJunction 1 7.11 8.62 11.50 45.38 22.67 24.59 12.54 25.84 18.84 50.37 52.38 110.44 77.59 4.83 4.45 13.67 30.39 81.95 8.85 22.24 45.84 58.23 69.74 50 ER6a ExonRegion 0 21.90 67.26 33.66 132.91 33.80 78.61 27.80 57.74 73.30 184.09 131.49 143.32 84.46 7.11 14.86 28.04 156.17 286.96 69.69 84.85 168.73 89.79 114.94 51 E6a_E7a KnownJunction 0 35.41 77.49 41.10 141.31 45.67 74.56 29.77 58.20 80.50 172.75 179.15 82.08 68.34 7.36 12.24 31.02 135.67 287.48 67.95 91.91 152.10 68.52 128.13 52 ER7a ExonRegion 0 136.85 186.94 54.69 244.61 114.18 103.46 56.99 92.97 103.96 209.07 148.28 119.96 131.85 9.43 18.42 25.11 169.09 225.40 83.34 95.85 126.63 123.76 128.42 53 E7_Da KnownBoundary 1 167.81 113.99 55.88 256.01 262.39 92.50 106.30 78.08 77.95 165.20 63.44 100.68 227.58 0.00 9.89 12.39 99.30 30.72 46.97 51.58 14.52 121.73 43.19 54 ER7b ExonRegion 0 75.68 129.59 36.67 236.02 123.84 121.45 60.05 64.21 53.57 143.20 62.63 59.66 56.74 3.01 9.53 10.31 55.70 67.62 36.42 36.59 33.29 66.02 55.75