Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SPATA7 Gene 0 24.91 78.09 38.72 43.89 37.05 25.88 23.76 33.43 31.22 41.03 8.84 18.67 16.59 8.24 7.64 8.62 6.07 13.01 33.00 23.29 19.35 24.40 15.48 2 45347 Transcript 0 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 356583 Transcript 0 0.00 35.78 6.98 17.18 8.15 7.95 2.03 21.24 13.80 12.84 2.68 6.30 6.33 12.01 0.00 0.00 0.00 13.51 7.53 12.40 7.78 19.04 4.01 4 393545 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 362040 Transcript 0 1.82 4.34 0.89 1.87 1.93 2.22 2.24 1.81 2.99 3.04 1.09 1.42 1.08 0.70 0.46 0.88 0.62 0.35 0.90 2.64 1.65 1.57 1.69 6 ER1a ExonRegion 0 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1b ExonRegion 0 12.77 48.83 5.11 6.86 15.37 34.86 12.51 1.82 8.40 11.65 3.97 1.36 0.97 4.96 1.06 2.00 2.32 7.21 16.59 12.14 13.90 7.63 8.01 8 E1a_E3b KnownJunction 0 0.00 20.59 11.59 8.56 0.00 5.79 1.81 3.61 16.87 20.63 10.63 11.70 7.63 2.12 6.30 3.42 8.98 0.00 4.14 26.78 22.92 2.33 0.00 9 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER3a ExonRegion 0 0.53 3.05 1.38 1.70 0.33 0.46 1.16 0.43 1.85 2.58 2.66 1.08 0.59 0.00 0.36 0.74 0.83 0.00 0.40 2.93 2.75 0.26 1.84 11 ER3b ExonRegion 0 3.95 31.16 17.16 30.43 22.24 15.81 10.82 14.93 24.84 38.72 13.24 11.35 9.00 12.86 5.57 15.10 5.40 15.16 27.59 24.67 40.56 22.24 15.56 12 E3a_E4a KnownJunction 0 3.70 23.68 20.99 30.90 19.61 0.00 7.68 10.88 18.08 29.39 7.79 12.00 15.10 7.77 0.00 8.46 13.00 27.32 57.98 27.61 36.39 24.31 30.82 13 E3a_E5a KnownJunction 0 0.00 35.78 6.98 17.18 8.15 7.95 2.03 21.24 13.80 12.84 2.68 6.30 6.33 12.01 0.00 0.00 0.00 13.51 7.53 12.40 7.78 19.04 4.01 14 E4_Aa NovelBoundary 0 3.78 0.00 6.56 7.19 0.00 11.81 14.84 0.00 1.77 4.70 0.00 6.90 6.49 0.00 0.00 0.00 0.00 0.00 4.80 20.96 3.15 0.00 3.84 15 ER4a ExonRegion 0 5.20 29.53 27.67 26.55 31.75 18.70 19.38 21.86 30.93 34.63 4.93 13.39 6.99 7.14 3.42 8.45 14.48 18.02 45.62 21.12 25.60 23.11 20.37 16 E4a_E5a KnownJunction 0 3.70 63.48 15.20 37.02 15.53 45.43 30.60 32.74 30.53 38.87 2.63 6.30 6.33 4.89 0.00 0.00 0.00 6.14 22.02 9.33 25.58 10.47 18.87 17 ER5a ExonRegion 0 20.28 81.85 28.67 42.11 31.38 44.55 22.81 38.10 42.30 44.37 10.39 13.89 14.85 10.49 2.96 5.45 4.95 20.13 26.01 26.42 30.44 29.00 26.25 18 E5_Da NovelBoundary 0 7.19 9.21 8.10 22.41 0.00 2.44 6.45 5.91 7.70 17.14 0.00 0.00 12.99 0.00 0.00 0.00 0.00 1.78 3.48 10.93 2.72 2.33 21.34 19 E5a_E6a KnownJunction 0 33.86 72.36 32.55 39.49 53.31 28.00 14.75 21.56 31.37 47.92 7.16 18.46 13.64 7.42 4.45 14.53 11.69 16.83 11.58 32.28 24.77 26.39 7.60 20 E6_Aa NovelBoundary 1 3.78 5.06 4.91 12.25 23.01 0.00 14.57 5.63 2.75 4.22 0.00 30.01 6.82 0.00 0.00 0.00 0.00 0.00 8.09 6.52 2.53 2.63 3.59 21 ER6a ExonRegion 0 31.16 173.83 57.60 74.97 48.90 53.70 44.65 55.34 66.00 88.71 14.97 31.57 41.86 18.63 10.24 27.50 13.18 24.50 56.77 40.90 28.58 62.69 23.08 22 E6a_E7a KnownJunction 0 32.60 244.10 85.48 99.22 50.85 15.16 31.71 76.32 75.43 113.55 20.01 44.41 55.19 17.36 22.99 8.63 0.00 26.45 40.19 56.76 38.30 55.54 54.89 23 ER7a ExonRegion 0 37.69 168.55 75.09 76.08 75.67 52.63 41.21 65.15 67.88 89.17 19.55 39.69 39.97 20.23 16.54 15.13 13.92 41.35 88.33 48.50 53.78 55.09 41.39 24 E7a_E8a KnownJunction 0 48.23 95.31 109.16 100.39 114.69 38.73 61.96 93.69 64.70 87.06 21.90 47.12 34.25 28.37 17.80 12.05 11.78 27.03 108.52 56.57 22.86 62.76 34.49 25 ER8a ExonRegion 0 30.67 108.11 87.20 86.66 51.12 28.60 46.10 75.33 68.52 76.91 17.14 19.13 27.86 12.24 14.29 19.61 9.46 18.37 72.12 47.48 27.76 48.42 21.56 26 E8_Da KnownBoundary 0 0.00 3.35 0.00 0.00 3.31 0.00 0.00 2.05 8.94 1.64 0.00 0.00 0.00 0.00 0.00 4.36 3.46 1.66 0.00 5.75 0.00 2.51 8.45 27 E8a_E8b KnownJunction 0 29.93 170.56 93.43 85.74 92.44 45.77 41.51 62.31 71.64 78.92 20.22 17.86 20.45 4.89 5.93 12.22 9.44 9.41 57.60 38.54 22.30 41.82 7.68 28 ER8b ExonRegion 0 4.93 9.97 1.29 3.92 5.45 6.20 5.56 5.00 7.10 6.53 0.61 3.19 2.67 2.10 1.02 1.90 1.02 1.06 2.29 5.01 2.21 4.44 3.23 29 E8_Ab KnownBoundary 0 14.89 18.09 0.00 5.99 3.74 7.67 2.16 9.69 5.87 5.32 0.00 0.00 0.00 2.47 0.00 0.00 3.65 1.95 0.00 7.41 0.00 5.94 11.18 30 ER8c ExonRegion 0 48.50 145.48 88.47 97.17 85.83 65.86 49.02 90.17 71.58 88.90 18.59 46.38 55.99 16.45 21.04 21.99 9.07 28.21 92.62 46.90 40.93 55.87 33.96 31 E8b_E9a KnownJunction 0 43.93 164.58 86.63 120.43 66.38 77.68 49.77 86.83 79.25 81.47 23.69 38.41 41.72 24.02 13.35 24.27 8.23 37.81 135.63 53.88 58.26 56.21 70.68 32 ER9a ExonRegion 0 40.84 117.53 87.57 104.66 67.98 52.16 51.24 77.01 65.00 64.80 26.24 44.10 33.87 18.29 7.90 21.74 11.98 24.26 94.15 40.31 47.54 46.03 42.15 33 E9a_E10a KnownJunction 0 60.38 122.48 84.68 89.73 71.82 50.94 72.91 77.14 44.85 63.15 36.59 49.22 27.27 19.19 8.90 11.02 13.74 18.53 84.80 33.11 40.59 40.48 23.65 34 ER10a ExonRegion 0 67.59 128.95 74.51 82.45 66.28 49.77 72.53 72.40 59.46 85.87 23.07 49.29 28.14 16.28 11.79 28.20 15.49 25.37 62.40 46.32 39.16 44.15 33.09 35 E10a_E11a KnownJunction 1 100.83 165.83 69.36 99.85 79.46 95.51 108.02 58.00 70.66 87.76 17.27 81.18 42.21 14.07 22.25 18.71 29.17 24.04 53.55 78.49 42.56 48.31 49.68 36 ER11a ExonRegion 1 71.58 158.80 75.24 122.29 84.46 77.79 67.50 72.56 64.45 83.74 19.05 50.93 68.82 17.54 20.78 19.56 22.93 21.33 67.07 48.47 42.71 34.70 36.09 37 E11a_E12a KnownJunction 0 93.13 186.28 79.36 129.12 92.19 65.98 73.49 80.96 54.25 81.74 21.85 36.31 40.42 18.13 13.35 23.67 12.44 18.65 85.93 44.04 25.08 47.03 32.35 38 ER12a ExonRegion 0 73.82 173.93 78.98 100.17 78.65 45.76 59.88 68.14 49.03 82.61 29.52 24.99 25.37 20.30 11.43 7.39 13.45 23.12 68.44 43.65 36.09 41.29 23.80 39 E12_Da KnownBoundary 0 58.53 177.34 86.07 91.30 61.12 74.73 58.74 71.06 45.31 90.42 19.22 12.45 19.48 17.60 13.97 3.16 29.27 24.04 50.26 58.29 45.41 41.46 25.10 40 E12a_E12b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER12b ExonRegion 0 62.03 176.85 113.58 116.37 89.01 38.58 44.16 79.02 53.44 83.90 17.19 40.47 24.51 8.96 19.36 12.44 7.78 15.19 47.86 44.78 24.23 45.38 18.78 42 E12_Ab KnownBoundary 1 88.98 316.39 76.82 135.98 112.31 11.30 34.67 52.53 50.38 63.50 9.21 63.77 27.43 7.42 37.21 16.24 9.44 19.03 74.45 42.63 31.32 49.29 20.83 43 ER12c ExonRegion 0 39.99 100.24 53.62 72.32 40.92 11.56 20.63 27.82 25.90 34.71 6.08 16.13 10.17 5.52 10.29 6.85 7.12 10.39 23.07 22.40 12.55 13.66 9.52 44 E12_Db KnownBoundary 1 222.85 240.35 58.28 86.04 113.92 27.20 65.27 38.32 30.38 35.11 2.68 38.56 29.54 2.47 14.59 17.35 9.54 6.80 56.85 18.22 17.36 13.41 16.90 45 ER12d ExonRegion 1 96.47 117.42 29.49 45.63 56.79 12.25 27.63 18.68 11.83 13.21 1.75 31.14 13.16 0.89 6.18 9.97 3.30 1.97 29.80 8.58 6.26 3.97 7.96 46 ER12e ExonRegion 0 2.96 13.42 1.23 1.91 1.07 0.00 3.18 2.77 2.96 3.21 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00