Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TDP1 Gene 0 46.92 104.34 43.90 55.38 75.77 29.97 61.48 61.09 39.59 86.34 147.04 106.95 51.97 140.75 93.78 114.75 111.95 72.00 65.01 56.99 31.24 45.86 28.09 2 393454 Transcript 1 80.90 210.16 10.02 28.37 98.22 58.09 136.86 23.95 16.29 34.20 179.05 5.85 0.00 102.54 14.71 136.72 111.55 66.41 56.85 78.11 33.61 38.15 50.53 3 335725 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 357382 Transcript 0 0.00 10.06 8.10 0.00 11.80 0.00 4.37 0.00 9.69 18.40 10.21 0.00 0.00 11.95 0.00 0.00 0.00 2.28 3.86 0.00 0.00 0.00 8.02 5 393452 Transcript 0 3.01 0.12 0.00 0.00 1.28 0.00 0.03 0.00 0.00 0.05 3.15 2.12 0.03 0.42 0.00 0.00 0.00 1.05 0.00 0.00 0.03 1.52 0.00 6 ER1a ExonRegion 0 17.21 69.88 3.68 9.26 34.36 28.62 54.30 11.52 6.30 15.51 76.22 2.26 2.79 50.42 20.90 72.54 44.30 28.33 34.12 35.55 18.20 15.70 29.45 7 E1a_E2a KnownJunction 0 0.00 28.02 1.54 1.93 27.42 63.71 59.22 14.01 4.98 17.14 47.33 0.00 0.00 46.32 27.44 94.33 39.27 19.77 65.60 27.74 20.32 17.51 23.90 8 E1a_E3a KnownJunction 1 80.90 210.16 10.02 28.37 98.22 58.09 136.86 23.95 16.29 34.20 179.05 5.85 0.00 102.54 14.71 136.72 111.55 66.41 56.85 78.11 33.61 38.15 50.53 9 E1a_E4a NovelJunction 0 3.78 3.35 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 15.11 0.00 0.00 2.35 4.45 12.05 4.77 0.00 0.00 0.00 0.00 2.57 0.00 10 I1_SR1 SilentIntronRegion 0 2.12 2.03 1.23 0.00 0.00 0.37 0.13 0.00 2.47 2.29 2.13 0.00 0.00 1.79 2.90 10.40 4.29 5.54 15.93 4.68 4.63 10.42 3.52 11 ER2a ExonRegion 0 7.92 13.53 10.42 5.07 20.67 10.16 16.84 13.91 7.72 25.22 50.14 14.27 12.58 56.09 36.08 63.68 72.29 26.61 30.11 23.95 15.83 8.59 9.06 12 E2_Da NovelBoundary 0 40.60 24.14 97.19 71.65 35.31 30.15 50.79 45.92 39.99 53.32 17.06 19.36 7.30 17.66 10.63 50.67 29.17 55.51 38.21 37.14 19.21 14.45 54.38 13 E2a_E3a KnownJunction 0 6.89 27.43 8.52 1.56 16.38 7.84 6.05 8.71 9.46 37.10 36.27 19.51 6.82 61.22 37.83 80.75 74.24 21.51 20.42 26.46 10.44 5.39 6.74 14 E2a_E4a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 5.12 10.75 0.00 7.57 0.00 0.00 0.00 0.00 0.00 0.00 15 ER3a ExonRegion 0 34.16 89.76 41.55 47.68 57.70 33.58 67.42 46.32 33.99 96.37 203.48 100.39 39.47 197.36 97.84 149.70 164.79 100.23 70.17 88.37 44.30 52.84 37.06 16 E3a_E4a KnownJunction 0 34.75 73.80 70.99 46.95 64.09 47.30 76.75 52.45 45.95 83.81 275.28 153.65 86.36 267.65 147.72 202.34 211.41 131.45 87.81 70.50 53.93 61.97 41.32 17 ER4a ExonRegion 0 26.55 56.25 42.39 48.82 50.66 40.22 66.71 48.16 48.79 99.88 253.30 162.85 89.00 322.24 155.09 192.17 226.41 115.15 100.70 92.75 43.57 78.61 48.12 18 E4a_E5a KnownJunction 0 39.49 81.10 25.58 55.00 32.68 54.12 75.83 48.26 50.49 114.65 238.06 177.21 59.41 310.08 152.42 203.19 229.64 106.12 111.91 123.55 30.09 86.46 41.15 19 ER5a ExonRegion 0 28.31 51.42 25.05 42.13 34.12 25.57 50.69 35.37 42.44 85.98 183.73 163.21 84.00 207.63 120.87 145.05 185.62 100.17 77.19 67.82 43.33 75.16 34.77 20 E5a_E6a KnownJunction 0 44.38 56.11 44.91 50.44 61.71 19.48 58.16 53.19 54.05 83.19 205.00 191.01 130.19 224.50 110.88 147.91 161.85 108.23 59.30 44.29 59.06 66.13 35.85 21 ER6a ExonRegion 0 38.34 90.42 55.53 58.66 59.17 27.17 83.98 66.22 57.58 105.70 255.54 170.68 92.54 298.12 186.46 239.98 261.28 151.71 118.71 83.57 65.32 72.73 59.37 22 E6a_E7a KnownJunction 0 90.53 165.04 44.20 62.50 135.99 54.80 136.55 76.69 50.81 102.99 323.92 152.00 104.70 402.26 146.12 224.04 280.60 140.82 130.17 130.52 74.57 89.46 40.97 23 E6a_E8a KnownJunction 0 0.00 10.06 8.10 0.00 11.80 0.00 4.37 0.00 9.69 18.40 10.21 0.00 0.00 11.95 0.00 0.00 0.00 2.28 3.86 0.00 0.00 0.00 8.02 24 ER7a ExonRegion 0 61.44 120.62 40.75 48.60 131.72 49.30 91.88 68.64 56.60 107.48 344.83 143.37 94.07 316.80 159.73 208.05 227.01 140.43 89.46 108.21 67.06 69.23 49.25 25 E7_Da NovelBoundary 0 6.59 22.36 4.88 13.98 31.24 2.90 9.80 12.40 3.01 13.67 0.00 18.91 6.82 7.18 15.20 6.84 0.00 6.30 13.18 5.11 2.84 3.12 4.10 26 E7a_E8a KnownJunction 0 62.83 82.49 31.25 29.97 139.81 42.53 59.49 52.04 43.40 71.78 346.09 121.09 108.60 236.04 90.36 188.24 152.13 92.19 61.65 78.81 64.12 45.50 39.78 27 E8_Aa NovelBoundary 0 14.52 2.89 0.00 11.95 25.30 5.45 33.87 12.40 7.49 10.80 0.00 6.30 13.64 4.59 0.00 18.88 0.00 5.97 0.00 14.25 2.66 3.12 0.00 28 ER8a ExonRegion 0 42.79 79.81 40.65 38.41 106.51 31.04 76.46 72.15 50.00 96.23 297.83 181.47 78.02 263.67 153.92 225.43 223.82 127.12 92.34 83.92 56.04 78.46 40.39 29 E8a_E9a KnownJunction 0 111.72 100.84 55.02 67.42 133.36 58.32 104.49 74.39 71.70 88.27 314.50 195.66 79.05 361.88 262.32 317.18 262.55 142.48 184.76 95.88 57.45 68.83 54.97 30 I8_SR1 SilentIntronRegion 0 5.63 8.95 0.82 9.52 3.47 4.93 17.20 3.99 8.10 12.46 8.94 16.61 15.01 8.36 6.82 10.45 9.80 3.55 6.18 10.28 0.89 4.27 2.60 31 I8_AR2 ActiveIntronRegion 0 7.86 11.39 0.74 7.29 14.31 1.48 14.37 3.98 7.53 12.62 3.80 25.15 21.14 5.26 8.98 7.93 17.03 4.43 4.80 13.91 3.32 5.03 6.39 32 I8_AR3 ActiveIntronRegion 0 8.20 16.22 4.85 13.56 15.20 4.82 22.19 12.88 11.44 23.36 9.10 29.31 16.30 7.13 7.59 12.99 9.89 8.87 16.12 9.43 4.75 4.87 2.37 33 I8_SR4 SilentIntronRegion 0 12.02 22.44 6.51 12.70 13.75 1.83 15.52 11.90 8.09 10.80 3.89 9.75 12.67 8.74 1.70 16.57 4.74 8.03 1.17 9.93 3.67 5.53 2.40 34 E9_Aa NovelBoundary 0 12.89 22.17 16.62 21.18 15.28 0.00 34.01 10.76 7.96 22.43 4.42 12.45 0.00 0.00 4.45 3.42 4.77 4.68 3.86 21.86 3.15 0.00 4.10 35 ER9a ExonRegion 0 76.52 101.00 53.54 49.71 115.52 39.97 98.48 69.10 52.23 111.77 284.37 166.38 110.94 259.21 160.43 211.66 182.30 110.30 95.39 92.50 46.40 65.92 42.23 36 E9a_E10a KnownJunction 0 109.06 135.70 53.66 55.80 174.02 49.23 138.85 59.60 63.11 102.48 262.38 235.88 113.79 257.52 141.67 263.86 153.62 88.79 130.17 83.09 40.03 84.26 34.06 37 ER10a ExonRegion 0 74.45 110.17 60.34 51.82 125.59 45.43 110.43 70.95 54.20 109.35 300.53 274.84 163.79 279.14 152.41 212.71 207.87 80.34 101.45 74.39 44.05 72.95 48.88 38 E10a_E11a KnownJunction 0 113.06 146.82 52.66 61.53 93.12 36.57 113.94 69.74 68.34 129.74 331.56 263.64 165.90 343.22 249.83 272.24 254.14 95.09 101.65 72.29 39.60 121.92 60.27 39 ER11a ExonRegion 0 67.33 97.09 49.94 57.43 104.97 33.13 86.12 71.15 48.38 111.05 263.90 274.64 91.23 273.33 167.65 199.45 192.57 84.97 100.12 81.55 56.85 64.17 43.84 40 E11a_E12a KnownJunction 0 107.28 122.22 60.47 66.92 212.56 50.77 143.62 97.35 56.80 113.68 273.17 353.52 129.70 336.57 211.88 181.15 184.67 93.68 117.93 98.94 71.91 72.01 56.85 41 ER12a ExonRegion 0 76.15 103.63 41.36 52.48 129.42 31.70 81.65 77.50 42.85 97.67 243.66 250.31 120.89 291.88 170.17 187.37 177.44 105.89 92.05 75.25 56.35 51.79 41.47 42 E12a_E13a KnownJunction 0 68.90 104.72 30.13 42.25 116.21 24.59 71.90 59.11 28.82 81.77 214.84 209.77 110.87 242.16 241.55 202.00 160.92 109.02 77.27 73.19 40.83 58.60 21.26 43 ER13a ExonRegion 0 51.84 95.79 56.70 70.14 96.61 37.06 74.40 68.31 40.70 113.87 253.09 215.31 75.18 238.55 196.16 239.63 198.69 126.86 68.18 60.02 40.98 52.62 38.13 44 E13a_E14a KnownJunction 0 67.35 127.61 84.74 89.77 123.60 61.21 83.56 74.26 60.39 142.34 293.92 203.47 61.68 276.95 236.36 260.62 299.86 107.90 108.90 74.85 43.99 60.99 31.41 45 ER14a ExonRegion 0 88.40 109.08 57.35 56.75 106.86 38.22 75.13 70.43 47.40 113.43 243.94 118.18 65.10 233.09 181.14 172.58 190.54 113.05 118.33 82.86 58.93 57.43 36.93 46 E14a_E15a KnownJunction 0 123.43 94.98 66.11 53.51 109.25 35.26 85.63 67.20 34.58 118.30 195.10 104.58 67.69 196.25 142.65 113.73 158.30 125.44 102.03 65.00 47.38 48.93 29.96 47 I14_AR2 ActiveIntronRegion 0 11.44 3.11 0.90 1.66 8.70 1.78 15.78 3.29 2.59 2.40 0.12 3.52 9.53 0.00 4.31 0.00 0.98 1.41 0.00 0.33 0.00 0.59 0.00 48 ER15a ExonRegion 1 68.82 76.53 70.83 68.77 95.68 37.89 79.57 72.26 38.65 108.61 222.41 54.85 56.37 210.47 194.72 172.35 164.72 128.16 62.97 75.13 53.36 48.63 49.38 49 E15a_E16a KnownJunction 0 7.33 0.00 0.00 0.00 3.14 0.00 0.00 0.00 0.00 0.00 5.16 5.70 0.00 0.00 0.00 0.00 0.00 2.24 0.00 0.00 0.00 3.06 0.00 50 E15a_E17a KnownJunction 0 76.53 69.00 83.62 55.77 107.13 35.04 56.22 59.43 33.59 93.80 164.83 67.97 57.46 202.60 217.57 166.20 103.13 87.47 62.97 76.13 53.50 26.45 27.23 51 E15a_E18a NovelJunction 0 0.00 0.00 6.98 6.79 0.00 0.00 1.81 6.74 2.92 4.14 13.32 0.00 6.82 7.24 8.90 7.18 4.77 4.23 0.00 5.69 10.44 5.14 0.00 52 ER16a ExonRegion 0 1.70 0.35 0.00 0.00 0.70 0.00 0.09 0.00 0.00 0.15 4.29 0.66 0.10 1.27 0.00 0.00 0.00 0.92 0.00 0.00 0.10 1.49 0.00 53 E16_Da NovelBoundary 0 7.41 0.00 0.00 0.00 0.00 11.41 10.16 4.07 1.48 2.87 0.00 0.00 0.00 5.06 0.00 0.00 14.31 14.18 0.00 23.20 0.00 0.00 7.60 54 E16a_E17a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 ER17a ExonRegion 0 44.51 84.37 74.75 67.56 90.93 34.34 54.11 74.45 41.26 102.26 171.76 85.08 57.87 209.02 210.09 155.40 141.15 98.74 106.87 59.32 49.53 56.47 34.51 56 E17_Da NovelBoundary 1 11.34 0.00 3.08 2.06 11.97 0.00 24.47 6.82 0.00 5.10 5.00 0.00 27.43 7.42 0.00 0.00 8.42 14.63 0.00 6.33 0.00 3.00 8.28 57 E17a_E18a KnownJunction 0 86.46 96.63 95.15 99.39 134.13 57.69 60.11 108.60 66.55 132.59 179.41 87.78 75.48 214.38 175.91 129.03 189.81 87.30 121.42 77.53 38.49 63.38 27.15 58 I17_AR3 ActiveIntronRegion 0 14.65 4.84 2.10 3.03 8.19 2.28 16.54 3.29 5.90 5.03 5.99 11.34 13.41 2.40 5.07 7.46 8.71 4.71 2.48 9.24 1.03 1.62 1.41 59 I17_AR5 ActiveIntronRegion 0 3.55 3.68 2.83 3.93 6.56 1.18 8.55 6.65 4.99 9.93 5.49 6.44 5.59 4.54 3.97 5.37 5.97 16.97 4.52 7.14 2.28 2.69 4.17 60 E18_Aa NovelBoundary 0 0.00 13.02 9.67 22.34 14.26 0.00 10.38 20.04 6.19 10.99 2.47 6.30 6.66 2.47 4.45 3.33 9.54 5.84 4.80 11.95 0.00 0.00 10.93 61 ER18a ExonRegion 0 49.01 134.11 44.86 67.78 76.91 28.15 53.57 70.80 42.23 82.00 72.15 79.95 38.32 58.56 50.14 56.09 47.08 44.66 49.04 37.34 15.19 37.94 17.50