Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AL161756.2 Gene 0 19.45 27.90 18.67 26.59 22.83 23.57 12.58 17.00 8.90 10.27 5.01 8.55 15.04 6.10 6.58 9.96 6.16 14.00 8.03 6.62 1.29 0.50 1.01 2 447107 Transcript 0 15.84 19.69 14.02 17.04 16.07 15.11 7.94 10.68 5.93 7.05 3.06 6.92 9.42 3.77 4.43 6.98 3.62 9.85 5.06 3.77 0.97 0.30 0.92 3 IG42 Intergenic 0 14.84 21.17 11.74 19.51 19.88 14.39 12.83 10.95 4.84 7.96 2.12 6.70 12.93 6.26 9.47 10.07 7.11 16.15 8.75 8.99 2.10 0.99 1.85 4 IG42_SR2 SilentIntergenicRegion 0 9.99 20.14 10.58 17.93 20.48 14.14 13.84 7.95 3.33 5.33 2.25 5.60 10.38 6.87 10.79 9.57 6.80 17.07 7.85 8.44 2.21 0.61 2.05 5 IG42_AR1 ActiveIntergenicRegion 0 12.16 18.77 21.50 30.63 11.29 9.77 11.46 15.72 2.52 15.41 4.24 7.13 15.61 7.09 9.34 13.74 13.28 17.73 8.47 6.51 4.68 1.22 1.83 6 IG42_SR1 SilentIntergenicRegion 0 22.45 24.77 14.06 22.89 21.52 15.87 12.99 15.65 7.24 11.71 2.08 8.83 17.47 5.93 8.81 11.61 7.62 15.63 10.76 10.76 1.85 1.57 1.81 7 ER1a ExonRegion 0 14.25 25.54 15.87 37.99 27.40 18.78 15.08 15.43 6.04 13.55 3.73 14.46 16.89 2.77 9.36 8.61 7.01 8.32 8.61 10.24 0.85 0.00 0.00 8 E1_Da NovelBoundary 0 7.04 19.67 35.89 57.73 14.86 15.67 14.00 30.85 15.13 25.44 2.68 12.00 21.10 2.12 6.30 16.32 4.77 4.39 16.57 20.65 0.00 0.00 0.00 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 I1 Intron 0 9.62 21.79 14.41 22.68 15.49 14.76 10.87 9.38 5.62 7.26 2.53 4.40 6.74 5.05 6.03 7.53 6.19 14.52 7.63 7.84 1.69 0.80 1.13 11 I1_SR1 SilentIntronRegion 0 8.27 18.31 11.82 17.81 16.28 13.25 9.26 8.33 4.73 6.88 1.83 5.33 6.30 4.53 5.85 6.81 4.56 6.21 7.05 6.63 0.52 0.58 0.81 12 I1_AR2 ActiveIntronRegion 0 5.55 35.68 17.68 21.64 14.48 18.64 11.51 10.56 6.94 6.45 5.39 4.26 12.49 8.65 7.33 8.77 12.45 23.06 9.92 15.35 5.78 0.68 2.41 13 I1_SR2 SilentIntronRegion 0 14.73 23.13 19.13 34.48 15.58 16.75 13.93 11.37 7.08 8.98 2.66 2.89 5.02 4.60 6.06 8.50 6.59 28.76 8.28 7.03 2.26 1.32 1.25 14 I1_AR4 ActiveIntronRegion 0 9.83 12.20 6.10 17.04 2.12 7.60 13.52 6.23 3.73 2.53 1.77 0.00 4.10 1.83 3.02 7.74 5.64 7.78 1.79 2.88 0.00 1.30 0.00 15 E2_Aa NovelBoundary 0 29.86 31.44 10.38 26.64 62.05 42.02 39.66 23.82 7.55 12.28 5.37 0.00 5.68 11.89 19.04 16.24 0.00 13.64 0.00 18.47 5.25 0.00 0.00 16 ER2a ExonRegion 0 13.40 26.46 15.18 25.15 19.13 14.40 11.93 12.26 4.55 5.79 4.32 0.28 11.66 4.76 5.57 7.31 5.96 9.69 4.96 8.18 0.49 0.93 1.34 17 E2_Da NovelBoundary 0 2.82 5.79 5.68 18.05 11.80 0.00 0.00 10.23 1.42 1.42 2.26 0.00 0.00 0.00 5.69 0.00 3.55 12.15 4.80 2.68 5.81 0.00 0.00 18 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 I2_AR2 ActiveIntronRegion 0 4.85 10.76 5.87 22.09 7.42 9.47 6.06 9.22 4.32 4.48 1.87 0.00 4.74 4.85 8.14 7.72 0.72 13.54 2.80 5.23 0.60 1.27 0.00 20 E3_Aa NovelBoundary 0 16.89 50.06 42.84 57.10 19.61 32.03 19.30 26.94 12.62 21.76 5.05 18.91 6.82 8.95 13.23 15.12 9.35 13.85 8.09 8.88 5.81 0.00 0.00 21 ER3a ExonRegion 0 28.02 47.33 30.55 39.02 32.31 33.24 19.34 27.94 14.46 14.00 7.88 13.18 15.96 9.83 6.47 11.66 9.12 20.85 13.04 9.15 0.91 0.00 1.88 22 E3a_E4a KnownJunction 0 57.64 52.23 36.93 31.70 43.46 25.44 12.67 19.06 11.17 9.24 4.00 26.56 13.64 4.94 9.15 16.49 3.46 17.58 8.75 3.13 3.15 0.00 4.01 23 ER4a ExonRegion 0 32.32 32.49 23.67 26.76 20.74 37.45 15.47 16.48 11.85 10.60 7.33 10.65 19.30 10.18 9.82 17.31 6.92 22.61 9.41 3.48 0.93 1.07 1.75 24 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER5a ExonRegion 0 4.15 11.08 5.64 6.23 7.67 6.46 6.07 1.71 3.05 4.79 0.00 2.46 8.14 1.46 1.35 3.25 2.16 5.01 2.21 2.32 0.48 0.45 0.00 26 E5_Da NovelBoundary 0 9.26 2.63 1.27 16.91 0.00 5.79 0.00 4.48 3.04 3.52 0.00 12.60 14.28 0.00 0.00 0.00 0.00 3.48 3.48 2.68 0.00 0.00 0.00 27 E5a_E6a KnownJunction 0 0.00 0.00 7.24 0.00 0.00 0.00 0.00 0.00 1.71 8.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.84 0.00 0.00 0.00 0.00 0.00 28 ER6a ExonRegion 0 24.40 21.46 19.19 20.62 26.07 30.46 6.73 24.64 12.40 11.39 6.42 8.51 18.06 7.54 7.00 12.18 5.16 17.41 8.71 4.99 3.88 0.81 1.15 29 IG41_AR1 ActiveIntergenicRegion 0 6.21 13.96 12.39 20.75 12.47 25.32 4.11 9.68 5.11 7.82 0.79 4.33 9.21 5.08 2.58 5.10 3.24 10.37 8.31 3.83 0.36 0.17 0.24