Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RPS29 Gene 0 64.05 173.04 1172.47 1539.20 634.50 158.07 94.75 476.76 326.32 529.49 1681.11 126.69 179.56 1313.76 1397.02 882.62 1209.09 305.92 1155.87 456.88 903.14 471.93 500.39 2 245458 Transcript 0 63.09 537.52 7284.38 8832.31 1614.24 159.32 90.33 2971.37 1843.35 3370.97 12675.48 912.58 1701.70 7548.04 8619.26 5455.39 10502.44 1275.93 10337.68 3660.27 5862.13 3123.32 3386.90 3 396020 Transcript 1 90.55 61.19 57.72 69.23 35.48 25.76 30.61 57.77 65.42 56.35 354.51 60.01 101.55 86.69 176.48 86.30 138.80 44.73 49.61 65.57 197.75 38.12 49.38 4 IG3 Intergenic 0 0.00 3.08 1.84 1.54 2.03 1.85 1.00 0.00 1.86 1.29 10.74 0.90 0.00 6.13 11.38 3.75 6.67 2.55 0.00 5.37 7.23 1.05 0.74 5 IG3_AR1 ActiveIntergenicRegion 0 0.00 3.34 3.26 1.52 2.70 2.64 1.26 0.00 2.16 0.86 18.43 1.70 0.00 9.65 19.50 5.67 9.10 3.00 0.00 8.07 13.06 1.99 1.40 6 ER1a ExonRegion 1 458.27 1449.57 6692.68 9905.51 6273.75 1727.84 924.12 2812.74 1850.26 3093.60 12490.20 166.07 173.68 9882.50 10177.82 6282.91 8958.13 2098.62 8487.09 3217.33 6786.99 3358.72 3638.85 7 E1a_E2a KnownJunction 1 62.16 155.56 7192.00 9439.26 123.94 65.47 101.93 2959.10 1721.48 2794.80 530.61 708.53 658.24 411.56 1454.61 1155.59 528.66 1592.10 1064.31 392.58 362.26 475.91 485.63 8 ER2a ExonRegion 1 58.50 134.87 4871.99 4141.00 58.25 41.15 40.86 1994.10 1410.90 2694.12 8361.57 311.76 416.80 1521.02 1803.56 935.48 5426.97 419.20 1869.62 1562.72 4645.90 692.23 526.51 9 E2_Da NovelBoundary 0 78.90 42.03 37.64 29.43 76.32 16.81 50.39 24.73 35.24 22.24 44.80 0.00 6.82 24.25 25.59 36.49 69.28 26.36 28.14 37.14 16.74 13.96 0.00 10 E2a_E3a KnownJunction 1 66.16 612.06 8823.55 8944.52 116.13 26.41 62.31 3966.81 2577.95 4938.44 21094.55 875.39 1775.37 7098.33 8919.24 5481.30 17251.50 839.85 13976.97 5577.03 9802.83 3462.57 3752.48 11 E2a_E4a KnownJunction 1 146.91 70.97 87.96 102.38 44.65 17.55 28.53 80.87 83.74 78.01 661.01 84.48 170.61 132.20 282.84 114.84 252.36 56.38 62.03 95.88 356.58 51.07 66.67 12 I2 Intron 0 25.65 17.48 31.96 29.27 32.20 10.81 24.51 24.88 19.18 15.79 34.96 21.17 19.10 30.49 39.51 34.13 24.05 12.31 10.38 19.91 6.53 14.21 9.45 13 I2_AR1 ActiveIntronRegion 0 36.91 29.16 39.66 40.82 59.33 19.79 37.19 35.42 31.01 25.76 54.28 20.82 20.92 40.49 54.86 57.10 36.11 19.14 17.87 30.18 8.79 24.95 17.36 14 I2_SR1 SilentIntronRegion 0 19.98 8.74 3.72 2.39 11.82 10.15 20.36 1.13 2.69 1.34 18.39 27.68 22.22 42.87 41.27 13.27 13.12 0.97 4.59 4.74 5.22 4.96 1.78 15 I2_AR2 ActiveIntronRegion 0 21.32 13.20 15.62 15.66 26.58 6.66 19.68 14.43 13.95 10.41 24.92 22.14 20.95 22.06 31.88 30.02 13.55 4.80 8.89 12.31 4.27 12.39 7.87 16 I2_SR2 SilentIntronRegion 0 26.52 17.39 42.17 28.06 17.75 10.32 21.37 23.27 14.93 15.31 37.52 17.75 20.13 32.76 40.25 33.88 26.65 19.95 6.76 20.46 10.18 10.73 8.61 17 I2_AR4 ActiveIntronRegion 0 18.51 10.40 41.61 40.81 24.45 4.32 18.06 32.42 19.09 14.83 24.30 24.08 11.06 18.63 25.77 15.01 21.37 7.70 6.16 20.35 2.87 8.87 4.58 18 E3_Aa NovelBoundary 0 49.79 35.13 18.33 32.23 15.11 5.17 24.11 32.16 21.01 10.58 6.74 31.96 15.10 14.77 4.45 12.05 17.20 6.22 8.56 29.59 6.18 3.12 0.00 19 ER3a ExonRegion 1 60.02 462.97 5745.21 8720.11 3112.36 292.24 118.35 1975.94 1108.74 1803.51 4256.41 949.78 1628.03 7997.74 8319.29 5429.47 3753.37 1712.01 6698.39 1743.51 1921.42 2784.06 3021.33 20 ER4a ExonRegion 0 34.19 51.41 27.48 36.07 26.30 33.97 32.68 34.66 47.11 34.69 48.02 35.55 32.50 41.18 70.12 57.76 25.24 33.09 37.20 35.26 38.93 25.17 32.09 21 IG2 Intergenic 0 4.39 21.70 11.33 13.88 14.31 13.21 11.93 19.04 28.12 16.65 6.88 8.29 8.14 5.68 5.51 5.77 5.17 8.36 8.42 15.64 5.42 6.09 5.47 22 IG2_SR5 SilentIntergenicRegion 0 6.97 26.07 17.85 23.47 17.83 21.23 22.43 27.65 40.39 29.72 17.54 11.15 12.73 13.85 11.50 15.88 10.38 23.44 18.22 28.46 13.45 13.09 12.65 23 IG2_AR5 ActiveIntergenicRegion 0 6.44 37.30 34.17 26.72 30.53 29.21 23.07 43.00 68.97 37.85 17.51 18.67 16.76 17.56 14.50 14.38 16.44 21.31 19.88 38.15 22.35 9.34 16.26 24 IG2_SR4 SilentIntergenicRegion 0 13.79 35.45 7.84 26.32 31.37 11.64 28.31 21.46 54.45 31.50 16.50 20.01 28.38 10.89 3.05 5.02 7.40 10.07 17.79 19.19 4.48 9.16 10.68 25 IG2_AR4 ActiveIntergenicRegion 0 13.80 35.37 14.60 29.86 60.84 25.35 35.23 38.48 67.50 39.54 11.68 28.24 16.92 8.19 5.30 10.60 8.61 15.51 17.87 14.52 12.46 9.24 8.30 26 IG2_AR3 ActiveIntergenicRegion 0 7.13 23.56 20.11 27.09 36.39 36.70 27.70 45.38 61.61 31.73 16.29 29.04 29.47 12.61 7.15 10.36 9.11 14.64 16.08 31.34 9.05 15.06 12.56 27 IG2_SR3 SilentIntergenicRegion 0 0.09 3.04 8.14 14.63 13.62 13.82 10.14 11.12 24.02 12.27 2.94 7.37 4.97 17.45 6.37 12.95 1.72 6.37 31.43 12.23 4.97 12.35 8.02 28 IG2_SR2 SilentIntergenicRegion 0 7.30 22.61 15.64 21.54 27.02 28.83 18.95 30.94 46.35 23.58 6.42 10.47 11.28 5.85 8.09 3.80 4.22 6.12 8.14 19.05 2.54 11.98 4.50 29 IG2_AR1 ActiveIntergenicRegion 0 13.70 116.28 21.83 30.34 27.71 16.99 13.72 35.41 46.02 31.66 5.77 12.25 7.78 2.91 13.09 4.14 6.25 7.41 10.15 25.64 1.76 9.55 3.22