Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AL121809.2 Gene 0 17.72 17.30 5.33 4.90 19.68 14.90 23.01 8.50 7.47 8.02 6.87 12.53 14.95 13.14 18.27 18.11 23.02 10.72 14.54 26.99 13.69 6.87 19.01 2 366255 Transcript 0 367.38 308.45 2179.24 2142.77 250.98 212.21 403.09 2378.36 2156.67 2136.33 180.75 90.66 83.00 78.23 146.42 321.61 381.74 2169.85 237.58 460.76 297.09 190.53 345.26 3 ER1a ExonRegion 0 6.37 7.05 6.54 4.79 8.77 4.46 14.19 7.88 7.41 7.63 5.01 19.72 26.16 22.99 35.04 13.79 18.15 8.94 15.09 12.91 5.76 7.15 13.76 4 E1_Da NovelBoundary 0 913.12 980.35 1155.58 1156.56 696.27 627.54 908.12 1444.16 1321.54 1192.97 395.84 217.72 304.36 216.49 299.77 723.57 592.15 1360.29 511.36 815.26 467.22 303.90 594.55 5 E1a_E2a KnownJunction 0 2869.62 2397.20 17377.36 17077.45 1926.49 1629.69 3129.68 18959.12 17179.74 17027.42 1418.10 682.72 613.11 579.97 1099.33 2485.93 2965.96 17227.74 1820.29 3550.86 2308.99 1497.65 2673.40 6 E2_Aa NovelBoundary 0 18.23 22.30 7.01 8.26 7.72 4.54 5.87 10.80 18.03 12.57 12.69 25.36 0.00 10.01 4.45 14.78 16.27 27.11 8.66 11.25 8.90 7.90 11.52 7 ER2a ExonRegion 0 52.59 59.24 11.85 11.09 69.54 58.19 76.70 24.29 19.91 22.06 21.35 14.43 17.45 18.20 23.77 47.07 59.52 33.76 41.72 93.96 47.51 18.48 59.74 8 E2_Da NovelBoundary 0 235.38 176.81 117.91 123.59 239.39 107.84 209.33 150.17 134.87 132.08 99.45 96.63 80.03 48.33 99.14 245.58 175.60 244.45 174.78 295.11 84.26 62.09 196.59 9 E2a_E3a KnownJunction 0 0.00 0.00 36.69 46.41 0.00 5.34 1.99 34.54 44.88 32.07 0.00 0.00 0.00 0.00 5.93 16.24 0.00 88.17 23.44 25.12 11.92 0.00 12.98 10 Ix Intron 0 13.33 7.04 26.44 35.17 33.69 10.97 19.17 14.60 13.33 18.29 10.34 25.07 7.56 10.71 13.06 6.55 6.24 6.97 2.01 10.05 0.69 19.68 2.77 11 Ix_AR1 ActiveIntronRegion 0 13.49 7.13 26.77 35.61 34.12 11.11 19.41 14.78 13.49 18.52 10.47 25.38 7.65 10.84 13.22 6.63 6.31 7.06 2.03 10.17 0.70 19.92 2.81 12 Ix Intron 0 14.64 7.91 20.52 17.99 28.91 9.91 16.59 18.94 13.52 12.93 8.35 18.27 18.24 5.78 6.42 5.14 2.85 4.18 4.13 10.12 1.43 10.81 2.54 13 Ix_SR1 SilentIntronRegion 0 14.76 7.98 20.68 18.14 29.16 9.99 16.74 19.09 13.64 13.03 8.43 18.37 18.40 5.83 6.47 5.18 2.88 4.21 4.17 10.19 1.44 10.90 2.56 14 Ix Intron 0 120.33 194.78 27.36 141.58 128.60 95.59 98.80 59.16 93.55 63.48 95.09 183.50 155.76 86.00 47.11 64.89 67.21 31.90 41.51 53.36 42.64 76.34 43.00 15 Ix_AR1 ActiveIntronRegion 0 121.09 196.02 27.54 142.49 129.42 96.20 99.42 59.53 94.14 63.87 95.69 184.68 156.75 86.53 47.40 65.29 67.62 32.10 41.78 53.70 42.91 76.82 43.28 16 E3_Aa NovelBoundary 1 1326.83 1243.33 4753.94 4706.33 1141.26 761.95 1318.43 4203.07 4438.15 3783.72 567.88 213.37 281.64 116.78 471.11 1305.21 1184.94 4808.80 998.62 1453.73 670.59 458.15 1333.29 17 ER3a ExonRegion 0 0.07 0.25 0.11 0.09 1.00 0.00 0.12 0.05 0.00 0.18 0.85 0.00 0.00 0.25 3.63 1.58 0.31 0.23 0.10 0.00 0.00 0.20 0.00 18 E3_Da NovelBoundary 0 3.33 2.43 2.19 0.00 7.30 0.00 8.79 0.00 8.36 0.99 0.00 6.15 0.00 0.00 14.59 0.00 3.46 6.18 4.80 4.99 0.00 0.00 2.99 19 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 Ix Intron 0 4.69 29.14 8.72 31.18 26.48 25.96 24.84 23.28 44.59 19.24 3.63 14.42 17.13 6.84 1.60 3.04 6.76 4.41 2.17 18.51 2.26 4.98 0.00 22 Ix_SR1 SilentIntronRegion 0 4.71 29.23 8.75 31.28 26.56 26.05 24.92 23.36 44.74 19.30 3.63 14.47 17.19 6.87 1.61 3.05 6.77 4.42 2.18 18.56 2.26 4.99 0.00 23 Ix Intron 0 5.50 52.49 13.42 34.23 18.47 18.74 22.56 20.54 41.41 15.93 6.06 25.98 25.67 7.13 5.08 9.32 9.17 9.24 6.57 27.65 0.79 6.91 2.90 24 Ix_SR1 SilentIntronRegion 0 5.50 52.49 13.42 34.23 18.47 18.74 22.56 20.54 41.41 15.93 6.06 25.98 25.67 7.13 5.08 9.32 9.17 9.24 6.57 27.65 0.79 6.91 2.90 25 Ix Intron 0 4.25 20.69 2.37 19.61 17.86 34.35 21.79 16.53 29.34 13.96 6.39 25.94 27.17 6.76 4.55 8.09 11.55 11.16 7.85 23.03 1.29 7.83 3.43 26 Ix_SR1 SilentIntronRegion 0 4.26 20.72 2.37 19.63 17.88 34.39 21.82 16.55 29.37 13.97 6.40 25.98 27.21 6.77 4.55 8.10 11.57 11.17 7.86 23.05 1.29 7.84 3.43 27 E5_Aa NovelBoundary 0 31.86 22.82 2.19 5.16 6.28 18.00 24.16 0.00 5.50 0.00 3.90 10.95 11.85 6.42 10.26 6.49 7.20 0.00 25.79 9.84 0.00 4.65 12.80 28 ER5a ExonRegion 0 10.38 3.84 1.38 2.30 2.02 0.00 2.00 0.97 1.39 1.29 0.73 8.37 7.30 4.40 3.42 7.82 9.98 0.00 0.00 3.20 2.50 0.79 2.20