Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAM179B Gene 0 33.07 63.34 32.70 51.20 42.40 31.99 39.14 28.68 50.20 35.92 40.77 63.33 44.72 41.06 22.78 48.32 42.02 28.87 29.88 46.65 34.83 46.54 38.66 2 361577 Transcript 0 0.46 3.20 0.42 0.00 1.76 4.18 2.91 0.46 2.45 4.59 9.62 0.00 0.59 3.65 1.72 6.92 9.90 3.44 11.10 7.45 10.74 3.26 17.44 3 429476 Transcript 0 2.12 0.00 0.00 0.58 3.70 3.32 4.48 0.16 0.24 0.00 0.00 6.18 7.37 1.62 0.00 0.00 2.83 1.76 0.00 3.24 0.00 3.17 0.00 4 382233 Transcript 0 3.26 8.35 4.64 5.09 8.40 11.70 11.00 2.14 6.63 4.78 4.84 0.00 6.82 2.12 0.00 0.00 4.58 2.16 0.00 0.00 0.00 0.00 4.27 5 361462 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 IG42_AR1 ActiveIntergenicRegion 0 14.89 9.54 0.69 0.06 5.75 8.60 13.97 0.00 1.35 0.07 5.67 2.04 0.00 8.14 6.50 15.30 9.68 2.17 1.87 8.73 11.65 12.21 10.33 7 ER1a ExonRegion 0 0.93 3.05 0.84 0.00 3.51 8.37 3.93 0.92 4.90 9.18 16.97 0.00 1.17 7.31 3.45 13.84 19.81 6.87 22.20 14.89 21.49 6.51 34.87 8 ER1b ExonRegion 0 11.03 23.46 23.50 23.22 13.10 14.50 25.04 18.73 35.25 26.97 41.06 38.23 28.10 44.37 12.71 55.51 48.94 47.44 30.16 49.72 49.94 29.10 44.08 9 E1_Da NovelBoundary 0 39.41 12.63 43.61 32.80 0.00 0.00 11.35 15.40 7.70 24.42 0.00 12.00 0.00 0.00 5.81 8.29 4.02 13.89 8.28 6.46 3.15 0.00 0.00 10 E1a_E2a KnownJunction 1 2.82 15.33 18.33 13.65 27.33 17.15 31.71 18.52 33.39 38.41 33.69 6.15 86.20 42.38 4.45 15.21 30.20 12.48 12.80 33.36 6.12 28.84 27.32 11 I1_AR7 ActiveIntronRegion 0 1.86 7.05 7.12 10.66 4.24 1.26 9.51 2.41 4.04 4.83 0.77 14.99 5.16 0.54 1.25 4.61 1.58 1.56 3.25 11.77 0.18 1.55 0.80 12 I1_SR5 SilentIntronRegion 0 7.70 18.60 9.52 17.62 9.90 2.33 9.73 9.50 8.77 9.04 1.24 9.89 9.40 1.05 3.67 7.50 4.19 3.66 6.16 9.81 1.02 1.65 2.56 13 I1_AR8 ActiveIntronRegion 0 5.22 24.56 10.67 20.46 10.61 0.72 11.37 4.36 5.48 8.47 0.50 7.89 10.34 0.39 5.28 5.03 1.72 5.36 5.34 8.73 0.57 0.74 0.76 14 E2_Aa NovelBoundary 0 6.52 9.60 1.39 18.21 8.57 0.00 14.35 13.88 2.98 4.14 0.00 13.95 6.82 2.83 9.64 8.12 3.93 1.70 8.75 3.26 0.00 3.06 4.35 15 ER2a ExonRegion 0 13.14 34.57 27.93 32.47 39.06 18.77 44.71 17.30 44.07 34.69 42.59 82.59 72.17 39.93 18.53 34.55 41.04 19.08 33.58 45.03 21.10 46.39 37.33 16 E2_Da NovelBoundary 0 10.52 11.91 9.73 16.65 7.47 2.21 28.53 9.20 4.31 9.72 0.00 12.60 21.26 0.00 8.90 8.46 0.00 4.02 4.14 14.19 0.00 3.12 0.00 17 E2a_E3a KnownJunction 0 9.63 54.92 9.91 28.77 15.79 36.06 48.93 9.73 40.22 30.38 34.69 90.93 62.17 33.73 0.00 34.61 8.79 11.61 41.32 36.43 19.77 30.31 31.93 18 I2_AR1 ActiveIntronRegion 0 7.17 5.74 13.40 16.05 14.10 1.72 14.44 7.76 4.85 9.01 0.36 12.41 11.58 1.06 5.01 4.47 4.97 3.81 4.20 10.41 1.24 2.35 2.76 19 I2_AR2 ActiveIntronRegion 0 3.83 4.25 6.00 18.99 10.71 0.28 8.34 6.11 8.92 6.97 1.17 2.65 7.94 1.33 3.61 5.33 7.79 3.44 6.28 11.29 1.33 1.58 2.35 20 ER3a ExonRegion 1 10.74 39.36 17.02 34.30 31.53 24.84 41.37 19.49 52.73 32.45 36.58 94.64 82.44 48.74 16.59 46.74 48.14 21.05 26.95 48.95 24.34 56.61 41.53 21 E3_Da NovelBoundary 0 16.37 16.05 6.74 7.26 0.00 2.61 4.15 10.56 7.26 5.99 2.53 0.00 6.82 2.47 4.45 3.59 0.00 0.00 4.05 11.76 0.00 8.21 0.00 22 E3a_E4a KnownJunction 0 21.71 30.98 26.67 39.09 21.31 17.60 36.43 13.35 43.08 32.96 47.01 108.49 94.15 44.15 19.66 18.46 49.46 17.37 27.20 41.99 40.59 64.36 35.08 23 E4_Aa NovelBoundary 0 0.00 0.00 0.00 3.76 0.00 0.00 5.61 0.00 3.21 1.53 2.21 0.00 16.23 0.00 8.90 7.60 0.00 4.31 0.00 18.34 0.00 0.00 0.00 24 ER4a ExonRegion 0 13.17 51.75 20.00 26.88 31.26 29.41 38.75 20.71 45.02 31.69 45.40 73.08 55.58 49.62 13.52 47.11 41.94 26.94 31.45 49.57 46.00 46.31 38.86 25 E4a_E5a KnownJunction 0 2.74 32.17 18.72 20.64 11.29 40.03 37.85 18.15 42.36 25.38 37.80 78.33 33.93 39.20 17.80 28.37 38.71 12.64 17.04 62.51 42.94 31.05 36.62 26 ER5a ExonRegion 1 10.85 38.16 15.23 29.55 28.59 31.43 35.61 22.16 41.84 23.86 46.15 67.47 52.01 51.87 12.20 51.93 40.07 26.52 25.47 52.03 53.05 42.58 40.70 27 E5_Da NovelBoundary 0 15.11 9.74 6.71 3.30 12.05 5.68 21.60 0.00 3.50 3.33 2.63 12.60 13.64 2.94 0.00 0.00 8.98 4.56 0.00 18.98 3.15 14.39 0.00 28 E5a_E6a KnownJunction 0 3.48 43.41 3.93 10.16 15.45 26.69 19.34 16.06 28.10 17.86 39.22 60.17 47.24 27.78 20.77 47.77 23.00 25.08 21.46 45.19 16.43 37.05 30.90 29 E5a_E7a KnownJunction 0 3.26 8.35 4.64 5.09 8.40 11.70 11.00 2.14 6.63 4.78 4.84 0.00 6.82 2.12 0.00 0.00 4.58 2.16 0.00 0.00 0.00 0.00 4.27 30 E5_Db NovelBoundary 1 7.26 21.51 6.98 6.53 0.00 0.00 10.69 6.94 3.47 0.00 0.00 24.91 25.32 9.89 0.00 8.54 0.00 0.00 4.80 5.88 0.00 17.94 0.00 31 ER5b ExonRegion 0 2.12 0.00 0.00 0.58 3.70 3.32 4.48 0.16 0.24 0.00 0.00 6.18 7.37 1.62 0.00 0.00 2.83 1.76 0.00 3.24 0.00 3.17 0.00 32 I5_AR2 ActiveIntronRegion 0 1.61 3.41 1.19 5.87 1.78 1.87 9.18 2.47 1.78 3.24 2.35 16.74 7.00 1.74 2.94 2.92 1.41 1.54 2.92 5.41 0.61 1.75 2.22 33 E6_Aa NovelBoundary 0 3.70 8.22 0.00 20.31 0.00 4.88 34.01 11.13 4.37 3.09 4.69 6.30 13.15 0.00 0.00 16.41 13.56 4.48 0.00 14.96 6.30 5.94 4.35 34 ER6a ExonRegion 0 9.73 32.28 7.99 34.99 13.29 21.32 26.41 15.39 34.13 24.61 31.65 75.46 49.96 37.70 9.84 57.07 48.73 29.46 21.93 47.04 38.05 43.09 47.21 35 E6_Da NovelBoundary 1 0.00 5.99 2.90 7.79 3.65 0.00 17.67 5.63 7.47 8.17 4.69 12.60 53.41 11.77 4.45 28.97 17.20 13.14 7.53 7.61 2.90 5.45 7.85 36 E6a_E7a KnownJunction 1 9.63 16.71 9.67 26.37 30.14 19.31 19.03 21.32 41.41 11.34 19.48 82.38 32.95 44.38 9.64 47.17 44.41 21.51 7.34 35.92 30.83 27.31 38.75 37 I6 Intron 0 4.14 5.87 2.37 7.07 3.53 4.09 8.94 3.81 7.62 4.43 5.98 19.47 20.40 6.95 2.66 10.28 7.88 3.01 4.78 13.60 2.56 7.73 6.28 38 I6_SR1 SilentIntronRegion 0 3.87 5.86 2.27 7.11 3.52 4.03 8.86 3.82 7.69 4.56 6.08 19.63 20.95 7.12 2.61 10.29 8.08 3.06 4.71 13.80 2.66 7.73 6.23 39 I6_AR1 ActiveIntronRegion 0 10.92 6.38 4.93 6.17 3.78 5.54 11.34 3.58 6.01 1.28 3.53 15.87 7.22 2.87 3.73 10.25 3.30 1.98 6.52 9.07 0.00 7.64 7.56 40 E7_Aa NovelBoundary 1 10.74 13.16 1.21 6.29 36.84 2.78 15.63 0.00 18.61 2.74 2.68 18.46 33.93 4.89 0.00 7.69 4.02 2.40 8.94 5.31 5.56 3.06 12.72 41 ER7a ExonRegion 0 11.25 39.10 14.53 34.68 42.55 51.87 41.49 21.00 44.22 30.57 29.38 77.20 52.24 35.81 8.22 59.00 41.83 21.64 27.50 28.19 28.54 24.98 46.93 42 E7_Da NovelBoundary 0 0.00 0.00 2.54 7.52 4.33 0.00 5.61 11.38 6.71 0.00 0.00 24.76 19.64 0.00 4.45 4.36 4.21 1.62 0.00 6.07 3.15 0.00 0.00 43 E7a_E8a KnownJunction 0 13.34 61.96 21.14 37.49 27.59 22.43 36.96 14.13 46.30 18.48 14.64 41.71 22.73 26.08 8.90 30.50 32.73 33.20 19.01 24.74 29.47 22.41 35.94 44 E8_Aa NovelBoundary 1 3.63 6.18 7.42 21.48 43.89 5.05 22.21 11.13 11.02 0.00 2.37 12.45 50.97 2.47 0.00 4.36 0.00 5.43 11.67 11.70 0.00 3.00 8.71 45 ER8a ExonRegion 0 23.73 65.53 24.63 40.51 37.61 30.48 43.03 22.70 48.58 32.14 40.72 46.90 39.45 36.25 12.48 38.54 51.75 25.83 31.64 41.44 48.21 32.13 38.31 46 E8_Da NovelBoundary 0 0.00 5.66 1.83 6.76 4.33 8.69 12.45 8.46 14.55 0.99 2.42 6.30 0.00 0.00 14.09 3.85 4.58 2.24 4.80 3.13 0.00 0.00 0.00 47 E8a_E9a KnownJunction 0 48.23 74.86 21.14 29.20 62.39 20.90 38.77 12.49 37.53 27.94 50.49 69.32 52.27 46.21 24.48 67.42 50.68 26.20 58.35 22.69 38.92 53.33 33.04 48 E8a_E10a NovelJunction 0 0.00 0.00 0.00 3.86 0.00 5.74 0.00 0.00 4.54 5.69 0.00 0.00 6.01 2.41 14.09 0.00 0.00 2.24 0.00 0.00 0.00 2.82 3.59 49 E9_Aa NovelBoundary 0 13.19 25.85 1.33 9.46 3.31 2.33 25.08 5.96 8.36 7.49 4.53 19.36 0.00 0.00 5.19 3.25 4.77 4.89 9.04 8.82 0.00 0.00 0.00 50 ER9a ExonRegion 0 36.41 59.91 19.70 55.66 46.54 39.83 49.07 20.88 46.58 28.38 39.45 64.15 69.34 40.30 15.94 50.78 38.50 20.45 32.11 39.31 27.22 34.48 37.28 51 E9a_E10a KnownJunction 1 39.93 48.02 16.68 43.25 77.08 66.27 56.31 32.86 42.42 16.09 19.16 93.18 73.86 29.61 14.22 46.06 26.83 6.76 24.75 29.66 14.33 54.50 35.25 52 ER10a ExonRegion 1 24.67 51.30 20.43 59.21 47.83 42.51 53.43 28.58 59.71 23.59 32.51 80.54 96.02 49.60 20.16 36.96 29.73 13.74 18.31 43.12 16.21 40.95 38.27 53 E10a_E11a KnownJunction 0 12.97 53.02 27.70 47.25 18.85 15.73 48.80 22.63 51.79 21.87 36.59 37.96 61.85 46.97 16.07 46.23 41.89 7.25 12.89 36.43 19.77 37.96 31.76 54 ER11a ExonRegion 0 28.46 52.01 19.82 51.65 43.44 42.99 42.41 28.98 51.43 27.99 37.80 78.86 69.65 41.51 22.63 41.71 44.76 11.36 25.05 39.67 30.95 40.25 40.81 55 E11_Da NovelBoundary 0 12.82 15.33 0.00 5.76 0.00 0.00 7.82 10.35 9.32 2.79 2.68 0.00 20.13 2.47 4.82 4.36 0.00 2.40 4.80 3.00 0.00 0.00 11.18 56 E11a_E12a KnownJunction 0 32.30 73.61 23.18 50.68 58.40 73.71 64.57 15.61 43.49 18.78 41.17 92.58 66.88 77.05 28.43 60.84 34.41 8.04 25.60 50.05 32.31 42.92 33.12 57 ER12a ExonRegion 0 27.20 39.46 19.27 37.97 43.70 55.57 44.38 16.37 42.49 28.55 47.12 77.24 29.07 37.29 23.51 34.80 34.69 16.25 19.32 33.48 30.08 40.18 30.47 58 E12a_E13a KnownJunction 1 20.45 38.09 15.73 51.34 34.30 26.06 59.66 22.30 50.46 43.17 40.80 104.73 57.79 7.30 34.74 30.33 57.41 15.21 27.01 45.45 32.00 38.94 29.45 59 E13_Aa NovelBoundary 0 3.63 3.35 0.00 4.99 4.24 4.32 16.78 1.56 5.21 2.82 0.00 0.00 0.00 0.00 0.00 4.27 8.42 1.82 4.05 2.36 2.97 0.00 0.00 60 ER13a ExonRegion 0 32.48 57.97 19.39 49.45 36.86 34.96 47.62 20.39 48.59 37.44 40.52 66.24 45.59 38.48 22.91 45.69 49.04 18.39 21.68 44.05 25.74 48.67 33.67 61 E13_Da NovelBoundary 0 10.82 8.88 3.05 11.69 4.33 5.79 8.70 6.94 20.69 17.06 5.37 0.00 14.45 0.00 0.00 12.05 3.55 5.68 4.80 14.57 8.53 2.39 3.41 62 E13a_E14a KnownJunction 0 32.97 64.92 22.23 56.84 42.53 53.66 30.30 24.32 37.79 42.01 30.96 43.51 55.84 58.74 36.22 57.76 30.76 6.22 21.84 42.19 7.66 52.17 30.56 63 E13a_E15a KnownJunction 0 0.00 3.35 0.00 0.00 0.00 0.00 1.90 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 E14_Aa NovelBoundary 0 49.86 51.24 9.17 25.94 59.93 0.00 28.00 8.21 20.63 7.55 0.00 0.00 6.82 2.47 4.45 19.99 3.93 2.07 8.94 21.73 3.15 2.69 11.27 65 ER14a ExonRegion 0 43.46 88.84 31.19 67.14 44.87 39.34 40.41 24.20 64.33 32.42 45.56 79.51 45.37 49.49 21.66 56.62 29.48 22.45 28.25 48.75 22.65 50.42 44.38 66 E14_Da NovelBoundary 0 35.64 36.38 18.98 31.60 21.48 2.10 47.65 7.11 8.39 5.86 0.00 15.30 18.67 9.71 9.64 17.26 3.83 1.74 8.85 13.23 0.00 0.00 7.68 67 E14a_E15a KnownJunction 1 33.93 73.28 41.63 64.33 40.66 32.14 29.28 22.88 47.68 26.06 55.75 87.48 19.97 57.33 8.90 71.09 9.54 12.31 25.79 44.17 17.85 37.05 29.54 68 E15_Aa NovelBoundary 0 6.82 35.39 5.47 10.45 7.39 5.51 12.28 5.18 10.56 6.21 9.00 12.60 13.64 0.00 0.00 10.34 0.00 1.70 4.42 9.20 0.00 5.69 4.35 69 ER15a ExonRegion 0 35.46 75.74 46.26 69.84 72.54 41.08 43.79 23.69 73.00 32.92 43.21 98.52 36.74 46.42 25.79 49.52 32.75 20.97 33.86 52.39 16.38 54.99 37.48 70 E15a_E16a KnownJunction 0 41.41 65.98 35.87 70.39 58.49 20.05 30.34 22.80 56.74 34.14 54.96 74.27 20.13 59.04 14.22 41.10 46.19 25.37 26.92 47.17 11.24 31.96 7.60 71 ER16a ExonRegion 0 37.15 71.93 31.56 57.64 53.18 25.50 34.43 26.68 49.35 38.71 42.46 57.74 26.92 35.58 29.40 29.70 40.50 17.47 29.10 45.22 13.96 48.04 28.77 72 E16a_E17a KnownJunction 0 43.79 114.39 26.37 62.36 77.93 28.05 39.22 38.86 36.57 23.45 54.75 57.62 55.68 50.74 15.82 23.16 57.13 23.17 38.02 56.69 27.18 59.52 40.46 73 ER17a ExonRegion 0 50.76 83.44 27.05 58.41 68.18 52.21 50.87 33.88 53.64 42.87 55.92 57.72 37.05 46.26 34.11 43.83 50.57 18.44 37.92 55.41 29.70 51.67 31.64 74 E17a_E18a KnownJunction 1 84.98 71.24 28.18 67.09 115.28 77.63 69.42 28.63 46.70 56.30 34.48 50.42 26.13 58.16 8.90 54.52 73.68 22.05 43.01 64.36 13.90 52.78 38.50 75 ER18a ExonRegion 0 66.16 115.94 44.61 64.61 85.15 48.36 53.10 36.23 62.28 51.41 46.16 65.53 43.19 41.44 34.51 50.80 53.94 20.53 42.80 55.82 22.75 53.88 34.77 76 E18_Da NovelBoundary 0 3.48 0.00 3.25 12.92 0.00 2.84 16.96 5.91 3.76 11.98 2.68 6.15 6.82 0.00 0.00 12.90 4.21 0.00 4.80 6.52 0.00 0.00 0.00 77 E18a_E19a KnownJunction 1 54.23 94.65 66.97 76.15 67.15 18.11 45.31 36.97 76.45 53.91 27.69 96.33 13.15 21.54 47.47 34.18 50.30 15.79 56.10 43.53 14.83 51.19 23.90 78 E18a_E20a NovelJunction 0 7.11 0.00 0.00 3.46 3.31 0.00 6.01 0.00 2.98 1.67 0.00 0.00 0.00 0.00 10.63 0.00 0.00 2.24 0.00 0.00 0.00 2.45 4.27 79 E19_Aa NovelBoundary 0 0.00 20.59 0.00 17.08 20.46 18.11 16.21 4.60 11.75 6.72 5.21 0.00 12.66 2.47 0.00 11.36 0.00 0.00 0.00 8.44 0.00 0.00 8.54 80 ER19a ExonRegion 0 75.10 153.10 56.59 103.80 110.91 66.44 75.60 47.16 76.12 58.16 46.92 101.87 39.78 43.94 46.09 62.31 56.46 37.38 37.16 47.66 41.72 47.92 61.40 81 E19a_E20a KnownJunction 0 115.28 178.52 72.14 143.21 110.95 101.08 76.36 36.88 76.33 55.85 46.38 90.78 61.36 37.85 72.69 114.16 60.40 68.23 60.61 55.42 36.14 85.36 97.31 82 ER20a ExonRegion 0 88.42 149.51 74.71 117.36 92.93 54.09 56.65 61.50 80.51 61.50 38.36 88.62 56.89 29.72 49.08 39.52 26.73 12.46 32.29 42.55 16.21 85.98 28.09 83 ER20b ExonRegion 0 1.06 1.02 0.61 2.73 5.35 0.00 0.66 0.00 1.24 0.57 0.97 0.00 4.69 0.00 1.45 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00