Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 WDHD1 Gene 0 19.54 50.66 23.35 27.16 48.22 25.15 76.63 24.36 24.61 45.86 96.62 113.00 51.26 87.67 39.59 81.38 90.94 27.28 16.28 45.05 7.85 16.61 8.52 2 420358 Transcript 0 0.12 1.32 0.00 0.00 0.00 0.11 1.56 0.00 0.00 0.07 3.87 0.00 0.00 3.92 1.02 1.22 1.75 0.00 0.56 1.00 1.04 0.00 3.45 3 421192 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 359167 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 360586 Transcript 0 14.57 24.83 10.74 9.02 6.97 3.01 17.38 6.81 3.32 4.72 4.87 11.80 4.09 4.02 5.26 6.66 4.76 3.86 1.66 6.13 0.18 1.16 0.94 6 455555 Transcript 0 0.08 2.44 0.94 2.14 1.88 0.55 5.27 1.64 1.55 3.73 4.24 0.17 0.02 1.75 0.36 4.17 2.41 9.26 0.82 4.43 1.34 0.94 0.05 7 475379 Transcript 0 2.10 4.17 3.35 5.18 1.90 0.70 11.73 1.55 3.68 4.03 1.90 5.49 0.99 1.75 2.38 3.60 3.04 1.53 0.18 4.33 0.00 0.15 0.11 8 ER1a ExonRegion 0 0.12 1.32 0.00 0.00 0.00 0.11 1.56 0.00 0.00 0.07 3.87 0.00 0.00 3.92 1.02 1.22 1.75 0.00 0.56 1.00 1.04 0.00 3.45 9 ER1b ExonRegion 0 3.70 18.64 1.23 2.61 3.12 9.93 18.54 2.74 1.75 3.25 27.38 0.00 0.00 65.10 17.65 32.20 47.31 1.39 5.57 20.57 15.06 8.51 8.81 10 E1_Ad NovelBoundary 1 16.45 62.36 3.22 11.79 25.21 33.22 123.61 6.74 9.87 9.97 59.12 0.00 0.00 117.78 24.35 123.73 123.42 26.24 22.02 51.20 34.10 19.78 13.66 11 ER1c ExonRegion 1 11.23 44.50 3.49 7.97 16.98 22.92 70.63 3.46 8.12 8.73 39.10 0.00 0.36 128.12 34.82 76.36 105.76 2.91 16.66 34.62 23.05 15.31 13.10 12 E1a_E1e KnownJunction 1 25.41 122.87 12.00 13.58 62.65 35.15 181.64 10.80 26.48 37.50 122.98 0.00 0.00 128.32 62.43 155.09 234.50 38.59 19.20 70.18 14.15 14.76 7.77 13 E1a_E2a KnownJunction 0 0.00 5.99 0.00 4.86 0.00 0.00 8.04 1.89 0.00 0.00 0.00 0.00 6.82 2.06 6.18 3.59 11.97 2.07 0.00 5.56 0.00 6.00 0.00 14 ER1d ExonRegion 1 21.26 93.10 8.04 13.39 37.46 33.33 134.18 7.82 17.61 23.14 88.24 0.19 4.69 145.82 49.95 139.56 211.83 26.11 25.90 60.13 23.57 23.10 12.00 15 ER1e ExonRegion 0 0.08 2.44 0.94 2.14 1.88 0.55 5.27 1.64 1.55 3.73 4.24 0.17 0.02 1.75 0.36 4.17 2.41 9.26 0.82 4.43 1.34 0.94 0.05 16 E1_Ae KnownBoundary 0 0.00 0.00 1.27 5.16 12.22 0.00 2.08 4.35 1.79 4.06 0.00 5.85 0.00 4.59 4.45 8.12 0.00 7.67 0.00 12.72 0.00 0.00 0.00 17 ER1f ExonRegion 1 8.14 36.98 10.27 9.23 15.79 10.98 62.14 18.19 22.42 42.12 90.80 23.01 15.04 40.39 15.86 49.27 122.24 31.49 5.40 51.06 10.92 5.98 3.73 18 E1b_E2a KnownJunction 1 3.63 5.85 11.15 9.19 3.99 0.00 2.25 13.31 10.88 45.85 135.88 51.47 6.66 33.96 10.75 11.71 151.57 14.67 0.00 32.09 38.80 9.31 4.35 19 ER2a ExonRegion 1 0.23 23.44 13.71 19.64 27.12 8.96 46.99 23.07 27.79 52.72 166.89 82.45 23.87 137.31 47.17 144.04 187.53 42.76 17.29 83.74 14.46 18.34 13.77 20 E2a_E3a KnownJunction 0 0.00 51.37 6.24 17.21 78.18 25.50 62.58 13.47 36.23 55.09 92.08 140.45 31.65 74.64 42.40 110.74 128.94 66.78 0.00 118.76 16.43 29.51 0.00 21 ER3a ExonRegion 0 4.57 77.92 14.83 25.40 47.99 22.20 118.29 23.35 38.04 55.70 155.55 151.45 51.10 98.25 33.61 113.10 138.49 58.86 10.37 87.68 8.74 29.02 10.74 22 E3a_E4a KnownJunction 0 12.59 97.02 27.88 13.52 35.82 2.38 49.06 18.98 46.06 50.07 187.94 234.53 83.44 147.33 33.99 122.28 161.94 27.98 17.32 69.99 2.78 28.11 15.11 23 ER4a ExonRegion 0 15.27 77.49 17.82 32.83 33.33 20.32 85.79 27.47 45.20 59.70 174.67 196.53 66.92 167.94 37.38 166.49 165.90 63.50 19.62 102.09 8.66 29.62 8.60 24 E4a_E5a KnownJunction 0 19.78 83.27 6.68 23.57 60.36 16.69 93.58 12.45 25.55 40.67 144.25 139.70 81.65 153.63 43.14 128.34 140.53 49.37 26.17 66.54 12.05 40.97 10.59 25 ER5a ExonRegion 0 11.41 63.44 10.28 20.23 63.43 26.68 82.16 19.79 26.91 37.24 151.83 118.42 60.33 136.78 33.45 117.31 144.92 50.40 16.49 55.44 11.41 35.34 21.82 26 E5a_E6a KnownJunction 1 3.56 51.11 16.38 14.05 69.27 31.80 80.99 23.25 22.80 36.26 124.35 141.20 55.19 154.92 28.18 159.36 136.89 35.90 24.00 68.46 8.46 37.05 12.29 27 ER6a ExonRegion 1 10.69 61.92 11.23 20.30 43.73 12.55 88.46 28.93 26.44 72.31 172.43 167.72 44.75 156.56 29.50 133.68 183.99 40.92 25.52 69.10 11.71 27.11 10.92 28 E6a_E7a KnownJunction 0 10.74 52.03 6.53 28.47 8.32 2.84 84.00 40.75 29.92 59.90 162.30 102.93 66.88 163.22 43.64 126.04 140.44 52.85 22.40 63.66 11.43 12.98 15.02 29 ER7a ExonRegion 0 7.83 36.43 14.09 30.00 50.55 26.82 108.44 30.85 31.44 77.95 152.99 162.84 59.96 138.82 41.58 135.34 165.68 50.25 24.08 67.38 9.81 29.26 20.59 30 E7a_E8a KnownJunction 1 0.00 60.58 13.54 21.38 78.10 37.88 114.16 21.77 30.67 67.80 127.82 253.88 77.11 153.69 26.70 136.63 115.19 31.59 25.22 68.14 8.22 34.72 7.43 31 ER8a ExonRegion 0 12.38 49.47 19.23 23.64 51.54 32.48 92.95 28.50 33.87 65.00 165.47 152.46 66.32 161.33 49.62 113.61 147.52 36.37 25.90 77.83 15.20 24.05 14.11 32 E8a_E9a KnownJunction 0 17.19 32.43 15.40 37.42 43.72 30.66 120.87 32.53 37.59 69.57 200.31 129.34 64.61 155.16 36.84 97.92 200.84 53.72 32.00 84.69 14.27 29.15 4.35 33 ER9a ExonRegion 0 14.99 38.54 22.82 36.01 47.73 21.84 101.84 33.52 40.79 55.72 204.90 171.11 73.55 169.27 52.53 142.20 182.67 45.10 32.01 74.66 16.56 31.74 17.41 34 E9a_E10a KnownJunction 0 9.48 30.32 9.52 15.08 61.29 15.73 104.62 33.23 29.51 40.08 226.00 122.59 56.00 192.54 57.61 93.99 205.61 25.83 26.45 55.35 12.17 31.66 17.16 35 ER10a ExonRegion 0 11.60 30.12 20.06 29.75 57.29 37.40 104.40 30.38 30.83 54.04 172.85 207.06 86.55 154.69 55.47 122.70 166.28 37.22 29.35 72.70 7.49 26.91 13.78 36 E10a_E11a KnownJunction 0 3.78 40.06 36.52 29.27 58.23 70.19 132.58 29.66 37.07 64.20 187.42 331.01 78.57 162.64 69.47 120.99 162.60 49.74 33.13 68.39 7.85 27.98 11.61 37 ER11a ExonRegion 0 12.33 32.80 28.72 30.29 58.06 39.95 106.92 35.09 42.90 66.37 181.73 257.19 89.76 189.72 61.27 176.49 174.03 63.59 41.12 91.06 19.96 23.98 13.42 38 E11a_E12a KnownJunction 0 10.67 44.20 30.01 20.54 56.28 31.40 103.03 43.70 49.74 50.26 143.88 215.17 105.51 187.95 58.84 155.51 128.38 56.25 37.37 82.39 32.80 31.05 7.26 39 ER12a ExonRegion 0 13.60 43.87 32.21 30.97 64.91 40.90 111.10 28.20 42.88 70.56 213.44 215.79 78.92 182.06 59.14 173.97 166.79 67.51 32.09 95.56 17.01 25.61 16.78 40 E12a_E13a KnownJunction 0 14.15 58.67 28.65 23.87 76.57 52.75 102.10 27.60 40.36 71.88 189.89 182.61 45.13 154.28 35.60 156.71 120.80 61.02 17.98 97.35 12.17 31.11 11.52 41 ER13a ExonRegion 0 18.24 46.21 22.68 32.73 56.52 36.05 107.12 28.07 36.70 68.36 163.43 167.51 66.78 180.11 59.15 155.26 157.84 67.71 27.48 67.16 12.74 22.89 17.62 42 E13_Da NovelBoundary 0 0.00 22.10 0.00 1.53 0.00 0.00 9.49 0.00 1.68 5.91 0.00 0.00 0.00 0.00 0.00 15.72 8.70 1.70 0.00 6.07 0.00 2.45 0.00 43 E13a_E14a KnownJunction 1 24.30 50.58 25.16 31.93 68.93 66.44 158.50 30.23 42.85 63.96 126.19 194.46 19.48 157.28 54.76 149.79 116.50 56.04 47.34 47.75 11.68 33.62 15.62 44 ER14a ExonRegion 0 19.23 51.15 33.24 43.41 79.98 55.28 109.53 38.97 45.45 79.77 189.61 162.79 77.56 189.66 54.54 147.72 167.51 72.08 34.90 74.59 13.14 31.65 16.34 45 E14_Da NovelBoundary 0 0.00 2.76 1.80 10.99 4.07 0.00 2.03 0.00 2.84 4.92 2.42 0.00 6.82 0.00 0.00 11.54 12.34 0.00 18.26 10.93 0.00 5.08 0.00 46 E14a_E15a KnownJunction 1 19.19 69.40 23.62 56.24 46.77 43.67 101.31 53.31 47.37 89.64 187.47 105.63 32.79 179.12 49.32 143.12 111.17 53.39 58.64 70.63 8.03 26.88 15.79 47 E15_Aa NovelBoundary 0 7.56 16.05 13.93 10.79 0.00 2.10 11.17 5.67 11.17 12.38 2.68 32.86 20.94 15.54 4.45 4.19 4.49 5.39 3.86 15.02 0.00 6.18 4.35 48 ER15a ExonRegion 0 21.65 62.82 39.02 44.95 70.11 48.53 131.59 51.46 45.78 97.81 212.51 144.69 82.00 172.65 62.15 157.52 192.88 55.09 33.96 87.13 18.21 38.22 14.12 49 E15a_E16a KnownJunction 0 42.38 112.15 38.85 68.52 61.21 72.57 134.03 69.66 57.78 119.19 267.80 205.87 115.58 216.26 95.19 317.87 215.61 98.78 70.12 106.81 32.49 43.29 42.17 50 ER16a ExonRegion 0 26.76 75.30 31.32 37.21 77.36 60.79 126.96 43.03 40.11 87.60 177.24 156.01 100.61 148.19 58.63 147.96 168.46 48.06 39.97 94.56 22.67 28.30 13.61 51 E16a_E17a KnownJunction 0 76.16 114.72 38.82 48.31 149.58 74.96 224.39 47.24 53.65 99.90 195.73 159.20 192.36 131.44 93.45 126.04 154.00 44.27 40.66 89.36 26.81 43.17 11.61 52 ER17a ExonRegion 0 48.33 134.39 61.08 52.56 103.85 67.28 156.12 39.31 55.41 96.51 149.21 224.02 114.44 159.34 67.94 151.65 146.71 37.11 28.11 88.57 10.72 30.94 15.22 53 E17a_E18a KnownJunction 0 60.97 139.91 70.43 74.35 61.04 48.38 188.00 32.08 49.62 96.62 101.92 226.42 108.43 168.58 58.59 144.06 147.83 43.11 44.42 81.49 14.76 28.35 3.41 54 ER18a ExonRegion 0 39.73 114.13 63.11 69.13 100.53 45.71 155.94 47.27 43.59 88.47 149.37 226.13 138.96 159.96 77.97 158.15 155.02 46.67 36.08 90.61 15.91 27.37 20.81 55 E18a_E19a KnownJunction 0 48.82 168.98 47.28 100.42 142.19 57.30 280.92 55.12 45.20 101.59 232.01 281.79 243.33 172.70 110.76 234.13 215.61 63.63 52.80 72.03 28.11 37.66 28.17 56 ER19a ExonRegion 0 43.68 143.02 59.72 60.68 100.64 48.55 140.80 50.51 46.89 97.29 240.08 253.61 130.19 199.56 100.87 179.51 208.78 66.68 39.49 92.04 28.95 30.57 19.44 57 E19a_E20a KnownJunction 0 38.30 101.89 43.73 70.69 66.72 62.75 116.37 41.90 41.49 98.45 299.97 240.98 175.15 195.07 89.99 202.43 249.56 47.92 43.58 94.53 32.31 34.29 18.61 58 E20_Aa NovelBoundary 0 7.56 5.59 14.78 18.68 4.33 2.90 18.06 4.39 8.10 13.57 2.16 6.30 0.00 0.00 0.00 7.01 3.83 0.00 0.00 0.00 0.00 2.33 0.00 59 ER20a ExonRegion 0 42.68 95.99 43.64 67.72 80.52 49.04 106.11 46.19 46.27 109.89 257.86 253.43 128.72 164.16 104.39 235.02 227.58 57.35 48.61 88.65 28.48 30.56 27.14 60 E20a_E21a KnownJunction 0 39.27 122.68 33.06 55.54 100.17 38.78 164.90 51.22 34.58 86.31 205.10 234.53 138.14 156.57 155.02 250.96 193.74 57.04 32.00 79.00 23.85 31.11 30.30 61 E20a_E22a NovelJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 9.69 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 E21_Aa NovelBoundary 0 3.78 18.81 12.03 10.52 21.65 4.66 15.68 6.65 6.57 15.02 0.00 0.00 0.00 6.83 0.00 4.36 4.02 10.82 0.00 3.07 0.00 2.69 4.35 63 ER21a ExonRegion 0 33.72 88.83 47.01 52.75 90.37 41.34 140.55 44.39 33.71 102.52 181.69 246.78 151.47 135.47 119.35 196.77 173.75 46.57 25.84 70.99 17.08 31.92 25.56 64 E21_Da NovelBoundary 1 20.52 9.80 9.05 27.64 16.72 4.54 31.89 11.62 16.96 13.48 3.90 19.06 27.43 18.36 37.58 12.82 0.00 4.06 7.91 5.24 0.00 8.21 3.67 65 E21a_E22a KnownJunction 0 52.97 114.52 57.48 48.21 139.39 60.14 154.83 48.96 35.16 106.53 166.52 220.12 138.95 172.94 142.53 207.81 191.12 27.48 21.18 75.10 20.20 41.27 20.32 66 I21 Intron 0 7.25 12.33 4.09 21.95 21.86 7.73 32.45 14.94 12.13 13.74 15.54 20.07 13.31 11.95 11.96 10.97 7.40 5.09 3.36 8.97 1.45 6.04 1.94 67 I21_SR1 SilentIntronRegion 0 7.29 12.39 4.11 22.06 21.98 7.77 32.62 15.01 12.19 13.81 15.61 20.17 13.38 12.01 12.03 11.02 7.43 5.12 3.38 9.02 1.46 6.07 1.95 68 E22_Aa NovelBoundary 0 18.45 18.68 14.93 22.34 46.52 29.47 92.39 29.86 9.92 26.43 11.90 20.26 28.73 12.24 4.45 15.30 0.00 7.96 0.00 31.06 2.41 6.06 0.00 69 ER22a ExonRegion 0 57.94 129.13 75.92 76.43 151.88 79.56 172.81 63.21 59.15 124.29 198.73 247.82 135.63 184.33 95.32 169.88 173.27 34.32 44.05 81.10 17.18 37.10 19.42 70 E22a_E23a KnownJunction 0 79.64 141.03 67.65 70.99 72.07 67.18 146.97 54.46 45.63 108.12 151.62 168.81 126.29 199.60 106.31 115.10 147.08 38.34 29.84 58.48 8.71 24.19 41.57 71 ER23a ExonRegion 0 77.52 146.61 72.14 72.32 155.97 80.06 215.02 70.25 69.20 118.70 169.32 200.06 137.97 149.83 86.41 135.87 148.00 24.52 33.71 80.14 6.66 38.34 17.55 72 E23a_E24b KnownJunction 0 91.57 155.43 66.41 85.34 158.57 67.40 131.91 65.72 54.28 105.25 146.98 241.73 116.39 212.14 125.84 138.51 123.89 24.29 27.86 81.49 0.00 25.41 19.80 73 ER24a ExonRegion 0 2.10 4.17 3.35 5.18 1.90 0.70 11.73 1.55 3.68 4.03 1.90 5.49 0.99 1.75 2.38 3.60 3.04 1.53 0.18 4.33 0.00 0.15 0.11 74 E24_Ab KnownBoundary 0 0.00 6.18 9.67 4.86 0.00 2.78 9.76 1.81 5.47 9.27 0.00 5.40 0.00 2.47 0.00 6.75 3.46 0.00 0.00 6.33 0.00 0.00 0.00 75 ER24b ExonRegion 0 59.26 143.60 65.46 82.39 162.93 60.95 175.58 48.51 52.70 86.58 156.05 219.67 121.57 141.09 101.42 113.05 119.65 22.15 17.57 68.25 1.88 28.99 14.62 76 E24a_E25a KnownJunction 0 88.98 131.69 81.96 87.90 247.45 50.37 246.69 55.12 37.41 63.69 145.83 298.60 190.25 125.49 148.34 121.68 155.77 25.54 24.66 68.97 2.59 21.86 16.13 77 ER25a ExonRegion 0 54.27 121.99 60.61 76.90 151.39 56.91 161.83 73.52 45.26 87.71 144.73 299.94 120.00 112.78 130.35 110.78 142.05 29.68 16.78 63.25 13.32 33.80 5.45 78 E25_Da KnownBoundary 0 114.09 166.62 38.61 51.54 210.27 76.15 210.26 73.03 46.85 85.72 123.98 210.97 130.51 89.23 145.13 104.84 103.23 23.46 27.20 46.92 5.07 41.82 8.62 79 ER25b ExonRegion 1 38.94 88.32 29.05 35.07 80.31 29.55 122.74 42.44 32.63 78.01 49.30 164.72 57.57 55.87 69.40 43.89 41.37 8.56 10.30 16.61 2.51 24.72 3.10 80 E25_Db KnownBoundary 1 16.45 51.31 18.75 18.75 30.14 20.16 45.44 9.45 13.57 33.07 23.22 98.13 40.58 38.08 65.02 34.86 8.88 0.00 4.80 8.18 0.00 8.51 4.35 81 ER25c ExonRegion 0 3.22 5.54 0.49 0.67 3.91 1.98 8.70 0.27 0.40 0.89 0.31 6.10 1.20 1.18 1.56 0.95 0.32 0.13 0.09 0.28 0.00 0.23 0.07 82 E25_Dc KnownBoundary 0 0.00 6.12 1.54 1.86 0.00 2.67 0.00 0.00 0.00 0.00 4.84 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83 ER25d ExonRegion 0 14.57 24.83 10.74 9.02 6.97 3.01 17.38 6.81 3.32 4.72 4.87 11.80 4.09 4.02 5.26 6.66 4.76 3.86 1.66 6.13 0.18 1.16 0.94