Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FANCM Gene 0 13.01 27.28 16.54 24.62 21.43 9.24 31.86 16.81 17.16 22.66 34.41 80.86 45.58 38.58 18.23 37.11 38.34 18.20 6.79 37.86 4.82 7.04 4.10 2 267430 Transcript 0 13.39 28.05 15.60 23.96 19.91 9.16 35.01 16.29 16.84 21.40 39.03 96.46 52.59 42.38 19.27 38.82 39.75 17.15 6.74 40.52 5.27 8.09 5.06 3 ER1a ExonRegion 0 1.07 5.09 6.82 3.77 4.49 8.17 13.01 7.49 12.33 15.91 28.19 9.68 9.40 32.85 8.59 45.77 36.24 42.82 5.09 32.92 10.12 4.22 3.32 4 E1_Da NovelBoundary 0 0.00 5.92 6.74 2.66 16.30 2.44 0.00 0.00 12.64 4.49 7.58 19.96 13.64 7.24 14.34 7.26 3.46 4.52 0.00 10.55 0.00 0.00 0.00 5 E1a_E2a KnownJunction 1 0.00 8.62 3.10 4.13 0.00 0.00 9.63 3.70 9.20 10.93 30.64 13.20 20.45 35.14 0.00 37.68 38.71 27.11 0.00 29.21 8.90 8.51 4.35 6 I1 Intron 0 1.02 5.10 6.16 2.55 4.90 0.71 14.81 7.45 6.92 14.34 11.37 13.70 2.69 6.39 3.88 10.03 7.96 6.21 1.23 12.51 0.21 0.20 0.57 7 I1_SR1 SilentIntronRegion 0 1.02 5.12 6.18 2.56 4.92 0.71 14.86 7.48 6.95 14.39 11.41 13.75 2.70 6.42 3.90 10.07 7.99 6.23 1.23 12.56 0.21 0.20 0.57 8 E2_Aa NovelBoundary 0 2.82 6.71 12.63 1.43 3.90 5.11 13.82 12.03 17.91 6.42 12.16 29.56 6.82 6.83 0.00 0.00 0.00 2.11 0.00 17.64 0.00 0.00 0.00 9 ER2a ExonRegion 1 0.62 12.08 6.75 12.57 11.06 2.16 22.85 7.80 17.71 15.17 50.68 48.80 37.47 46.17 7.87 68.94 70.31 29.98 5.52 47.68 6.60 7.55 6.69 10 E2_Da NovelBoundary 0 0.00 2.57 3.99 8.56 0.00 2.90 15.37 6.24 4.51 16.60 13.85 40.36 6.66 6.71 4.45 4.10 8.32 10.90 0.00 52.41 0.00 0.00 4.27 11 E2a_E3a KnownJunction 0 0.00 0.00 3.49 4.00 0.00 0.00 12.41 0.00 10.33 7.60 41.96 64.07 59.74 30.78 6.30 40.42 45.54 11.07 3.48 12.34 2.41 7.53 8.19 12 E2a_E4a NovelJunction 0 0.00 0.00 0.00 3.40 0.00 0.00 4.42 1.73 0.00 1.29 6.84 13.35 8.28 0.00 0.00 0.00 3.83 0.00 0.00 5.43 0.00 0.00 0.00 13 E3_Aa NovelBoundary 0 14.22 12.76 27.50 16.68 15.45 10.28 15.02 24.69 14.38 19.74 0.00 0.00 6.49 0.00 4.45 0.00 0.00 3.36 0.00 19.18 0.00 0.00 0.00 14 ER3a ExonRegion 1 11.07 15.17 6.91 7.29 5.59 6.32 27.99 4.08 11.43 9.70 30.38 57.39 38.36 35.83 6.06 39.40 43.42 25.63 5.47 32.00 3.59 4.03 5.42 15 E3_Da NovelBoundary 0 0.00 31.11 42.10 14.32 3.90 2.90 7.95 24.60 12.38 14.72 0.00 6.30 6.82 0.00 4.82 16.58 3.93 9.37 0.00 25.12 0.00 0.00 7.85 16 E3a_E4a KnownJunction 0 0.00 8.88 2.69 5.63 11.12 2.56 14.31 9.00 7.58 6.47 25.80 67.67 41.72 21.43 0.00 53.23 26.37 26.53 4.80 21.60 2.97 3.12 0.00 17 I3_AR3 ActiveIntronRegion 0 0.00 13.32 2.17 14.16 6.82 0.24 19.13 7.36 11.00 8.81 5.36 6.56 15.43 1.52 2.90 1.44 8.84 3.93 0.00 16.61 0.00 2.08 0.00 18 I3_AR4 ActiveIntronRegion 0 1.90 15.18 1.67 17.31 5.89 3.67 13.90 5.93 7.12 12.23 0.13 4.04 1.72 0.76 0.00 0.00 2.09 3.70 0.00 7.52 2.20 0.00 0.00 19 E4_Aa NovelBoundary 0 9.93 10.79 8.13 17.61 7.64 2.90 20.01 10.76 2.69 14.05 2.42 0.00 0.00 2.47 0.00 4.10 4.77 0.00 0.00 21.67 0.00 0.00 0.00 20 ER4a ExonRegion 0 4.05 19.16 10.91 24.09 10.74 4.54 26.75 14.83 11.69 19.41 36.38 80.54 60.11 42.91 8.48 33.16 39.61 12.25 6.13 38.31 5.25 6.60 5.12 21 E4a_E5a KnownJunction 0 0.00 12.50 5.65 16.91 3.90 0.00 39.88 15.12 17.82 24.28 41.17 106.08 60.71 39.03 8.90 34.35 35.06 16.46 4.24 36.11 2.66 11.14 7.77 22 E5_Aa NovelBoundary 0 0.00 8.75 8.93 0.00 30.14 0.00 5.30 0.00 1.30 2.85 0.00 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 2.75 0.00 0.00 0.00 23 ER5a ExonRegion 0 1.67 13.14 14.57 17.18 9.18 4.58 28.49 7.78 16.81 15.62 34.69 88.10 56.07 41.53 12.62 22.00 44.16 12.37 3.74 32.82 2.24 8.27 4.34 24 E5a_E6a KnownJunction 0 0.00 11.71 4.52 6.09 32.17 7.78 40.36 14.87 15.94 15.53 44.01 80.73 34.58 36.73 19.41 24.10 59.28 5.68 13.74 36.94 3.15 11.02 20.83 25 E6_Aa NovelBoundary 0 3.41 0.00 7.45 3.66 20.54 0.00 2.03 3.98 1.59 0.00 0.00 0.00 13.31 0.00 4.45 0.00 4.30 4.35 0.00 6.20 0.00 0.00 0.00 26 ER6a ExonRegion 1 4.28 15.38 5.98 13.58 12.65 11.58 33.48 9.56 11.28 13.56 30.64 87.27 37.48 38.14 8.33 17.83 48.79 6.35 3.26 38.76 2.17 6.23 8.57 27 E6a_E7a KnownJunction 0 3.33 14.47 7.86 7.49 0.00 13.00 30.91 7.93 16.96 14.08 28.69 49.67 26.30 29.67 10.51 32.64 21.04 1.99 3.95 40.84 5.81 8.14 8.54 28 ER7a ExonRegion 1 5.32 16.62 6.43 10.98 6.77 6.68 21.08 10.99 15.40 14.68 31.65 90.44 35.58 35.81 6.12 20.47 35.63 9.24 1.95 35.46 1.73 8.15 5.45 29 E7a_E8a KnownJunction 0 6.89 23.29 11.09 10.42 8.57 5.62 22.61 9.94 9.75 12.52 48.59 100.98 68.66 51.15 19.53 31.44 24.31 6.38 4.24 34.52 6.30 0.00 4.35 30 ER8a ExonRegion 0 9.63 15.64 9.10 14.18 11.75 9.32 26.46 10.97 13.98 11.85 41.66 134.16 69.22 49.75 11.97 42.29 44.96 17.46 4.06 45.61 5.27 5.29 9.49 31 E8a_E9a KnownJunction 0 10.00 34.80 7.86 16.48 7.56 15.22 29.63 11.67 18.49 15.18 57.12 135.64 67.53 40.56 4.45 38.02 24.78 21.56 9.60 60.91 6.12 8.45 0.00 32 ER9a ExonRegion 1 8.75 23.73 10.69 11.96 13.97 8.38 28.80 13.23 18.39 16.14 47.99 124.08 44.06 58.99 8.89 52.10 48.30 27.58 7.82 37.46 8.87 4.58 6.35 33 E9a_E10a KnownJunction 1 7.33 28.09 18.45 17.05 10.95 5.17 23.32 26.57 21.93 22.13 29.69 136.39 20.78 52.80 20.27 54.60 56.85 28.85 0.00 57.08 11.49 2.88 3.33 34 ER10a ExonRegion 1 4.93 20.75 11.82 18.79 14.18 4.41 21.22 19.13 17.46 16.72 26.80 92.72 33.80 61.00 10.32 51.73 59.56 28.59 6.43 44.91 10.05 5.65 7.29 35 E10_Da NovelBoundary 0 7.56 8.22 3.28 1.83 8.06 0.00 17.80 8.46 5.15 4.67 4.69 15.30 0.00 0.00 5.93 7.95 3.93 9.08 4.80 5.50 0.00 0.00 3.16 36 E10a_E11a KnownJunction 1 13.41 14.80 6.24 22.67 14.86 0.00 31.44 18.94 14.47 10.48 17.48 75.02 41.56 65.22 4.45 17.17 64.24 23.79 0.00 32.79 6.18 5.63 0.00 37 E11_Aa NovelBoundary 0 3.56 3.29 8.19 3.26 39.47 0.00 10.33 4.31 1.30 2.90 2.37 37.51 0.00 0.00 4.45 0.00 0.00 2.16 0.00 8.37 0.00 0.00 0.00 38 ER11a ExonRegion 0 20.83 31.64 9.99 19.53 22.52 5.68 31.44 11.15 12.96 22.29 42.89 80.50 46.37 47.55 12.38 39.47 64.48 19.83 3.50 40.16 9.20 2.82 6.64 39 E11_Da NovelBoundary 0 6.52 9.87 6.30 6.59 3.65 7.15 13.65 4.31 0.00 2.39 2.21 0.00 0.00 4.83 15.20 0.00 13.28 1.66 0.00 6.52 0.00 0.00 0.00 40 E11a_E12a KnownJunction 1 0.00 3.29 7.33 13.12 6.96 0.00 13.65 10.15 10.76 26.67 22.16 82.98 79.38 25.08 14.34 30.85 43.95 15.71 8.38 35.47 8.53 5.08 4.35 41 ER12a ExonRegion 1 2.84 12.42 9.83 14.90 10.58 7.17 26.40 17.16 10.42 22.64 42.89 106.18 56.22 48.21 9.31 51.00 58.48 19.02 10.93 31.35 6.28 7.40 6.25 42 E12_Da NovelBoundary 0 33.78 21.90 7.72 6.33 28.35 0.00 21.68 16.35 3.56 5.29 5.26 0.00 13.64 0.00 0.00 12.48 4.30 5.80 0.00 12.14 0.00 3.12 0.00 43 E12a_E13a KnownJunction 1 6.96 9.60 7.30 7.23 4.07 11.58 15.68 10.60 5.41 19.80 43.27 120.64 40.58 63.45 5.19 75.71 42.26 12.48 9.51 28.06 5.37 9.86 0.00 44 ER13a ExonRegion 1 4.87 14.08 6.77 12.44 10.65 5.33 24.60 13.06 10.92 18.90 40.11 113.15 41.46 53.11 10.40 48.66 51.19 24.21 9.86 40.45 10.11 9.00 4.59 45 E13a_E14a KnownJunction 1 7.04 26.97 8.07 23.41 8.49 0.00 20.54 11.09 9.52 19.90 29.38 157.25 55.35 58.69 4.45 69.73 24.12 21.35 4.33 50.56 5.50 14.45 8.02 46 ER14a ExonRegion 0 5.29 24.28 7.83 19.39 17.39 8.09 31.82 13.00 16.20 19.15 31.05 106.15 58.28 37.25 9.53 32.94 35.09 13.15 5.39 39.27 3.02 6.73 2.28 47 E14a_E15a KnownJunction 0 6.59 26.97 8.96 12.45 25.98 5.11 28.44 15.32 11.23 12.36 39.85 118.69 39.28 46.38 12.61 11.96 12.34 2.49 0.00 19.30 5.13 6.12 0.00 48 ER15a ExonRegion 0 5.95 21.34 11.47 25.44 20.84 10.66 40.95 20.00 21.63 19.35 40.41 126.33 73.95 39.49 15.09 35.13 33.39 12.80 1.01 31.98 6.82 5.99 3.74 49 E15a_E16a KnownJunction 0 7.33 18.62 15.79 35.99 27.33 19.93 36.35 22.88 21.21 23.13 41.01 161.30 110.87 29.43 16.69 44.43 43.29 15.59 11.58 63.41 11.18 8.82 3.67 50 ER16a ExonRegion 0 6.50 22.25 9.82 31.25 20.40 10.68 33.98 17.91 20.76 21.96 52.13 108.55 81.91 44.09 15.22 24.42 36.60 12.40 5.68 54.46 8.50 11.50 4.55 51 E16a_E17a KnownJunction 0 6.82 37.49 11.95 32.20 18.93 11.58 36.57 19.67 21.15 19.42 42.27 75.47 87.01 41.44 10.88 16.06 41.70 8.83 0.00 36.88 2.59 13.10 8.37 52 E17_Aa NovelBoundary 0 0.00 3.35 2.31 0.00 10.44 0.00 2.03 2.42 1.39 4.89 4.05 6.30 21.91 2.47 4.45 4.36 9.54 0.00 0.00 12.02 0.00 5.51 0.00 53 ER17a ExonRegion 0 11.04 47.18 15.11 28.41 19.58 8.93 41.90 15.01 21.06 24.34 47.42 100.11 64.21 39.92 20.96 26.66 36.11 12.16 6.12 39.82 6.35 7.37 7.79 54 E17a_E18a KnownJunction 1 18.74 60.78 19.07 27.70 36.50 31.52 56.75 13.47 14.29 25.73 24.64 144.05 62.82 26.61 25.47 11.71 47.41 11.03 19.11 59.63 0.00 8.33 8.54 55 ER18a ExonRegion 0 16.99 40.59 29.53 49.55 26.01 16.42 47.59 23.15 21.58 28.85 40.76 112.43 68.17 44.74 34.15 33.15 26.97 18.42 9.03 57.49 2.85 18.15 6.04 56 E18a_E19a KnownJunction 0 16.30 43.15 22.26 49.54 36.50 15.84 113.76 23.99 18.32 39.46 34.11 100.23 70.94 47.91 38.45 35.55 12.53 11.98 12.71 58.48 0.00 17.21 7.43 57 ER19a ExonRegion 0 24.31 53.44 35.43 52.31 50.36 21.41 73.50 27.40 20.95 37.03 43.66 126.04 85.38 46.13 33.32 37.61 29.37 17.86 12.77 54.78 1.05 17.27 3.68 58 E19a_E20a KnownJunction 0 54.75 74.39 38.70 60.53 51.53 17.94 71.01 16.51 32.96 40.88 67.39 194.16 131.81 46.27 45.99 35.20 29.45 12.93 0.00 66.41 0.00 16.47 0.00 59 ER20a ExonRegion 0 33.90 46.04 32.22 43.20 46.44 16.71 60.64 27.63 27.12 34.65 58.57 121.90 91.00 52.72 43.49 55.11 54.64 22.77 14.16 45.30 4.75 11.13 5.88 60 E20_Da NovelBoundary 0 3.78 10.00 3.34 13.02 0.00 0.00 24.55 4.76 4.63 4.24 9.90 5.85 45.61 7.77 4.45 15.38 3.46 10.61 0.00 21.16 0.00 0.00 4.35 61 E20a_E21a KnownJunction 0 42.08 49.66 39.24 25.84 41.17 2.21 64.43 11.21 20.72 32.83 51.96 113.59 27.11 52.45 51.05 50.84 38.15 25.91 7.81 17.77 2.90 2.94 0.00 62 E20a_E22a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 8.18 0.00 0.00 0.00 2.36 2.63 18.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 I20_AR1 ActiveIntronRegion 0 4.95 9.23 6.24 6.81 5.83 1.07 11.81 1.68 2.68 2.29 2.71 23.09 20.08 4.82 2.66 6.52 5.59 2.25 4.04 11.68 1.25 2.92 0.70 64 I20_SR1 SilentIntronRegion 0 2.47 5.84 4.67 3.86 9.86 6.18 9.78 3.10 3.34 0.64 5.73 24.45 17.11 6.89 8.86 19.21 15.34 4.24 5.13 6.26 1.35 2.24 0.00 65 I20_AR2 ActiveIntronRegion 0 8.39 12.81 9.05 9.17 7.88 1.34 13.20 2.63 2.43 4.98 3.17 19.07 14.58 3.32 4.45 7.94 6.26 6.69 1.86 16.36 1.60 3.04 1.28 66 I20_AR3 ActiveIntronRegion 0 3.71 16.52 2.87 13.06 4.49 0.00 11.73 6.04 5.68 7.29 7.14 12.29 7.50 5.21 3.79 10.19 14.30 10.79 1.55 16.19 1.64 3.71 0.98 67 E21_Aa NovelBoundary 0 3.41 29.67 12.18 23.27 7.56 4.20 41.51 13.72 10.36 12.73 9.95 12.15 27.60 0.00 0.00 15.21 22.72 8.83 9.04 18.60 0.00 3.12 0.00 68 ER21a ExonRegion 0 46.23 70.79 45.64 48.85 43.25 16.93 54.68 32.66 24.03 40.13 53.75 49.92 32.64 49.75 46.97 52.30 45.97 23.26 13.10 53.57 5.09 9.38 7.23 69 E21_Da NovelBoundary 0 14.00 15.33 8.25 15.95 15.70 5.28 5.92 11.58 3.56 11.71 7.84 6.30 0.00 4.53 6.06 3.59 0.00 11.73 0.00 9.78 3.09 2.33 0.00 70 E21a_E22a KnownJunction 1 49.19 77.42 23.95 50.44 48.64 13.06 53.97 21.69 21.41 29.47 42.91 76.98 41.56 30.37 75.04 61.10 29.64 17.82 8.66 32.09 6.18 7.90 3.50 71 I21 Intron 0 9.44 12.75 8.26 20.87 12.11 3.32 13.26 8.82 4.76 6.85 4.63 7.29 8.93 5.01 4.90 4.42 5.97 3.75 2.47 11.14 0.85 2.42 0.38 72 I21_SR1 SilentIntronRegion 0 7.00 11.74 9.07 22.89 11.53 3.29 14.65 9.75 5.66 7.64 4.77 6.33 9.49 5.79 5.65 5.08 6.91 4.34 2.53 12.17 0.74 3.11 0.49 73 I21_AR1 ActiveIntronRegion 0 17.88 16.35 5.61 14.20 14.25 3.44 8.67 5.75 1.74 4.21 4.16 10.68 7.14 2.43 2.38 2.20 2.84 1.78 2.29 7.73 1.26 0.11 0.00 74 E22_Aa NovelBoundary 0 37.49 14.47 10.44 37.32 44.91 0.00 25.39 8.34 3.12 11.93 2.68 22.96 14.93 6.89 4.45 10.85 12.90 5.47 0.00 27.87 8.15 0.00 0.00 75 ER22a ExonRegion 0 48.90 71.69 48.64 66.07 50.80 16.71 55.29 47.71 26.87 44.51 43.23 90.10 30.87 50.12 54.76 54.21 48.39 19.21 15.95 51.70 7.22 11.54 5.02 76 E22_Da NovelBoundary 0 21.19 11.84 15.43 26.94 24.45 2.67 7.46 8.42 17.01 11.95 2.53 11.70 0.00 4.71 4.70 11.71 0.00 10.86 7.44 18.54 0.00 3.00 0.00 77 E22a_E23a KnownJunction 1 55.57 47.89 56.06 58.93 40.24 17.38 24.16 52.41 33.25 30.00 47.75 86.43 13.47 30.08 61.44 42.64 26.74 12.31 17.69 50.43 5.50 5.14 0.00 78 I22 Intron 0 9.19 12.30 7.31 17.46 11.16 2.50 12.17 6.36 3.76 5.97 3.29 12.27 4.84 2.49 5.25 5.82 4.50 3.68 2.71 9.42 0.75 1.42 1.00 79 I22_AR1 ActiveIntronRegion 0 16.98 16.33 7.32 12.80 8.43 0.53 16.69 6.64 3.16 6.86 2.77 18.83 4.43 3.42 5.51 9.37 3.78 3.96 2.74 7.32 0.63 1.19 0.84 80 I22_SR1 SilentIntronRegion 0 5.93 10.64 7.33 19.53 12.38 3.35 10.31 6.27 4.03 5.62 3.53 9.55 5.04 2.10 5.15 4.34 4.82 3.59 2.71 10.36 0.80 1.52 1.07 81 E23_Aa NovelBoundary 0 3.70 9.27 7.75 33.26 0.00 2.56 3.97 11.62 5.18 10.61 0.00 5.70 6.82 2.47 4.45 13.93 0.00 6.18 0.00 5.94 0.00 0.00 0.00 82 ER23a ExonRegion 0 11.17 16.46 19.91 24.36 21.38 5.92 12.57 14.63 13.91 21.46 8.67 24.74 12.34 10.35 16.73 13.32 9.50 6.62 2.73 16.38 1.38 3.27 0.89