Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C14orf28 Gene 0 20.14 23.73 10.41 21.32 20.38 18.25 8.95 11.89 15.89 8.91 10.41 16.11 36.68 11.59 12.14 5.74 7.65 4.37 4.70 10.94 4.75 18.72 10.26 2 325192 Transcript 0 22.12 22.89 11.65 15.65 23.37 18.54 13.46 11.60 14.40 7.78 19.80 15.84 43.75 26.61 25.67 9.81 23.03 5.45 7.03 8.82 13.10 26.08 15.52 3 IG40_AR2 ActiveIntergenicRegion 0 0.74 10.65 16.52 5.24 0.00 0.18 0.17 0.08 2.18 0.16 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.87 2.03 15.64 0.26 0.07 0.09 4 ER1a ExonRegion 0 1.25 0.86 0.42 0.40 1.29 2.97 0.56 0.40 0.52 1.00 3.94 0.00 1.01 5.06 7.00 2.86 2.33 0.93 0.00 1.17 6.31 2.96 2.03 5 E1a_E2a KnownJunction 0 0.00 5.33 1.15 0.00 4.16 10.45 2.25 6.78 1.48 3.33 7.32 0.00 6.82 9.77 13.23 0.00 4.77 2.57 0.00 2.56 6.30 8.57 4.35 6 I1_AR1 ActiveIntronRegion 0 0.79 11.92 13.15 9.65 2.79 7.10 2.77 6.82 9.37 4.95 3.51 15.27 10.13 2.29 3.35 4.96 3.18 5.57 1.92 18.14 0.51 3.32 5.99 7 I1_SR2 SilentIntronRegion 0 0.00 9.06 8.20 10.35 2.54 4.89 1.90 4.88 9.33 6.71 2.56 13.16 10.67 5.56 4.57 3.09 3.65 3.42 1.06 11.17 1.21 4.70 5.74 8 I1_AR2 ActiveIntronRegion 0 2.57 15.25 34.06 13.92 2.36 9.21 5.71 5.45 6.66 6.03 2.44 11.75 11.11 6.03 1.59 2.12 2.99 11.11 10.66 33.56 2.47 5.93 5.24 9 I1_SR3 SilentIntronRegion 0 2.21 6.99 10.85 10.78 5.00 2.14 2.51 2.23 4.30 3.88 2.78 3.20 7.87 3.95 2.59 2.50 2.81 1.69 1.15 5.14 1.09 7.84 3.32 10 E2_Aa NovelBoundary 0 7.19 17.43 31.58 14.78 16.13 8.69 0.00 2.22 2.89 4.03 2.26 5.85 7.47 2.24 5.19 4.10 4.02 3.98 0.00 2.36 0.00 2.76 4.18 11 ER2a ExonRegion 0 28.36 30.21 17.95 23.66 21.21 20.07 15.90 17.36 24.65 13.32 19.45 23.03 78.86 20.88 19.72 10.82 15.65 11.88 11.15 15.58 10.69 35.61 21.84 12 E2_Da NovelBoundary 0 10.45 2.89 13.07 5.03 11.97 2.38 0.00 2.55 6.13 2.77 0.00 0.00 0.00 0.00 4.45 0.00 0.00 2.11 0.00 12.46 0.00 3.12 3.24 13 E2a_E3a KnownJunction 0 28.45 55.98 5.94 17.58 32.60 37.54 20.31 13.14 19.15 3.89 21.69 30.91 47.40 35.91 32.39 19.31 26.18 5.35 21.74 7.67 28.11 42.31 19.38 14 ER3a ExonRegion 0 28.41 31.00 9.52 20.06 30.98 22.94 19.74 13.85 18.40 4.61 29.49 20.20 55.71 36.15 37.14 8.09 22.48 6.08 5.38 11.28 22.38 31.21 12.56 15 E3a_E4a KnownJunction 0 60.31 15.92 23.86 15.75 41.00 19.36 29.01 11.17 16.58 8.76 24.01 25.36 65.90 51.33 37.95 15.72 54.98 11.28 0.00 11.89 19.09 27.07 19.12 16 ER4a ExonRegion 0 18.84 22.57 20.25 14.90 29.41 26.94 14.55 15.68 17.47 10.56 27.06 15.97 64.20 32.15 36.90 19.51 35.60 6.76 7.79 12.72 15.56 34.00 29.39 17 E4_Da NovelBoundary 0 9.26 0.00 0.00 17.51 0.00 16.69 5.92 2.14 4.77 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.98 0.00 0.00 0.00 18 E4a_E5a KnownJunction 0 13.26 19.27 16.71 24.41 28.01 7.55 11.53 14.42 16.00 15.69 38.54 10.80 46.75 40.97 38.94 8.37 41.80 1.70 13.93 5.62 8.22 38.45 24.33 19 E5_Aa NovelBoundary 0 0.00 9.93 10.35 15.92 20.46 2.44 0.00 11.67 6.45 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER5a ExonRegion 0 20.20 24.88 9.06 24.11 21.67 19.04 7.28 11.61 15.38 8.88 6.72 16.26 27.09 7.29 7.80 3.63 3.47 2.52 3.31 10.88 1.28 14.56 6.72 21 IG41_AR1 ActiveIntergenicRegion 0 2.67 1.28 5.75 2.56 0.00 3.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.06 0.00 26.79 0.00 1.31 0.00 22 IG41_AR2 ActiveIntergenicRegion 0 28.79 108.32 41.03 113.01 88.02 50.40 57.77 60.39 106.31 89.83 11.62 56.29 46.41 21.16 26.91 13.34 9.46 7.43 10.12 30.31 2.21 42.22 12.17 23 IG41_SR3 SilentIntergenicRegion 0 12.51 76.91 3.95 23.48 10.95 6.17 17.15 8.72 27.34 18.56 5.97 13.38 31.34 13.95 4.62 9.19 3.75 6.05 11.87 19.34 2.40 19.13 4.40 24 IG41_AR3 ActiveIntergenicRegion 0 6.83 43.45 9.20 50.18 44.76 31.45 45.64 26.17 68.92 42.52 13.95 62.36 66.61 23.99 6.45 14.55 17.38 8.47 9.74 27.22 5.49 39.27 13.38 25 IG41_AR4 ActiveIntergenicRegion 0 3.30 13.76 0.95 5.28 18.10 21.95 17.23 4.02 26.82 14.23 8.05 28.36 49.68 21.03 5.33 7.73 12.02 11.52 4.97 12.18 1.15 19.52 9.17