Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GCH1 Gene 0 70.79 55.91 17.87 291.20 276.28 88.69 69.78 264.60 915.22 197.55 132.10 92.03 180.65 102.92 61.49 92.25 64.22 107.35 151.28 166.16 1.50 47.26 23.52 2 395514 Transcript 0 0.00 3.29 0.00 24.37 11.21 3.01 0.00 11.01 28.96 6.50 31.69 0.00 13.31 4.83 8.90 15.89 14.31 1.82 0.00 17.32 0.00 0.00 4.01 3 395521 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 395524 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 491895 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 254299 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 477011 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 478119 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 0 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER1c ExonRegion 0 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1d ExonRegion 0 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 13 E1_Ae KnownBoundary 0 0.00 0.00 0.00 4.00 0.00 0.00 2.25 8.46 37.70 13.75 4.84 0.00 0.00 0.00 0.00 0.00 0.00 59.53 8.66 5.75 0.00 7.84 8.45 14 ER1e ExonRegion 0 3.56 9.08 2.65 26.38 11.63 13.81 7.78 28.57 134.08 33.80 26.51 1.68 15.00 33.03 9.43 16.13 19.17 51.46 31.70 48.04 0.50 6.59 7.58 15 E1a_E2a KnownJunction 1 26.52 29.60 17.86 175.00 88.71 33.28 34.84 186.23 828.32 197.57 149.51 26.41 90.58 167.93 61.56 102.28 119.87 222.98 262.97 287.69 6.30 44.82 35.68 16 I1 Intron 0 2.78 1.78 2.21 18.32 8.00 0.97 4.66 11.69 44.14 7.34 0.91 1.56 5.69 0.75 1.31 3.19 2.20 5.28 4.60 7.22 0.15 0.91 12.17 17 I1_SR2 SilentIntronRegion 0 3.41 2.02 2.57 19.22 8.40 1.18 5.12 10.01 38.98 7.00 0.98 1.57 6.65 0.56 1.26 3.13 2.59 4.49 4.51 7.67 0.14 1.13 13.43 18 I1_AR2 ActiveIntronRegion 0 2.89 2.11 2.67 16.23 8.53 3.06 2.39 7.21 44.22 5.29 1.29 5.94 5.09 0.00 1.65 3.07 1.10 6.61 3.02 5.87 0.00 2.08 10.79 19 I1_SR3 SilentIntronRegion 0 3.76 1.69 1.29 24.66 16.70 0.00 4.34 12.48 46.32 5.29 0.00 2.65 3.82 0.00 0.16 4.90 2.14 6.33 5.25 6.90 0.00 0.27 21.26 20 I1_AR3 ActiveIntronRegion 0 0.54 1.02 2.69 17.44 5.93 3.22 1.70 10.68 48.20 7.06 2.43 5.57 3.12 0.00 0.99 1.61 1.92 7.42 2.73 5.50 1.11 0.98 15.72 21 I1_SR4 SilentIntronRegion 0 2.63 1.93 2.19 20.33 9.12 0.80 4.84 15.12 54.06 9.21 0.97 1.37 5.91 1.13 1.51 4.34 2.01 6.22 5.03 7.79 0.19 0.73 13.66 22 I1_AR7 ActiveIntronRegion 0 2.86 1.00 3.25 17.24 1.55 1.74 4.39 11.89 65.74 4.71 1.56 2.13 3.62 0.00 2.80 0.00 0.00 2.27 3.69 12.06 0.00 0.18 10.46 23 I1_AR8 ActiveIntronRegion 0 6.35 0.00 0.00 16.76 0.54 0.00 3.31 17.28 51.63 4.59 3.87 8.66 10.79 0.00 0.00 0.00 0.00 1.85 4.78 11.28 0.00 2.08 11.45 24 ER2a ExonRegion 0 19.84 30.54 14.97 181.25 126.56 49.55 32.36 178.82 901.85 193.31 233.71 86.94 142.19 192.27 57.31 132.99 131.08 232.06 234.65 290.44 3.55 42.71 38.44 25 E2_Da NovelBoundary 0 15.11 3.35 1.42 53.51 25.30 5.51 18.02 46.82 124.22 22.56 2.68 0.00 8.28 5.12 4.45 4.36 9.26 38.88 28.71 24.42 0.00 0.00 0.00 26 E2a_E3a KnownJunction 0 10.45 41.97 9.82 159.32 123.43 58.09 43.94 188.86 761.42 159.37 217.37 85.98 129.86 215.67 65.64 141.59 126.32 234.00 170.73 240.52 3.09 40.66 32.86 27 ER3a ExonRegion 1 23.96 26.55 15.86 159.07 132.12 77.38 36.72 191.52 854.72 170.05 214.62 63.78 152.84 185.67 61.81 146.01 128.44 249.18 221.27 221.05 6.02 41.26 35.82 28 E3_Da NovelBoundary 0 0.00 9.27 3.52 67.39 4.33 0.00 0.00 16.22 108.30 12.73 0.00 0.00 12.99 0.00 4.45 8.29 8.79 45.47 58.54 10.87 0.00 0.00 15.28 29 E3a_E4a KnownJunction 0 45.27 41.51 15.02 153.86 175.04 103.07 57.06 168.12 815.56 151.80 245.90 107.59 209.08 183.94 83.44 154.49 131.28 196.45 250.64 221.09 5.44 42.31 22.96 30 I3 Intron 0 2.75 1.58 4.27 31.10 12.85 3.57 4.30 15.04 53.03 10.65 0.00 1.39 5.01 1.36 2.35 9.64 9.00 35.53 20.26 15.74 0.57 1.35 8.38 31 I3_SR1 SilentIntronRegion 0 2.77 1.60 4.30 31.34 12.95 3.60 4.33 15.16 53.42 10.72 0.00 1.40 5.05 1.37 2.37 9.71 9.06 35.78 20.41 15.85 0.58 1.36 8.45 32 ER4a ExonRegion 0 35.52 50.20 14.32 164.65 179.19 103.55 58.50 180.30 916.84 183.11 223.79 111.21 240.95 192.86 73.62 175.45 137.40 228.66 258.01 247.34 4.75 47.99 29.55 33 E4a_E5a KnownJunction 0 41.34 47.62 9.49 119.23 213.58 103.18 59.31 131.31 677.02 142.23 171.41 116.74 241.22 181.24 77.38 154.75 105.38 157.15 238.78 234.00 0.00 62.34 34.32 34 I4 Intron 0 3.19 2.89 2.43 41.97 20.17 3.58 6.34 20.34 89.62 12.89 5.31 3.25 7.34 2.83 2.10 6.33 5.56 25.68 10.45 14.16 0.00 5.73 6.51 35 I4_SR1 SilentIntronRegion 0 3.38 3.04 2.57 43.32 21.36 3.77 6.63 21.09 93.09 13.43 5.43 3.44 7.77 2.80 1.92 6.38 5.88 25.75 10.87 14.29 0.00 6.07 6.77 36 E5_Aa NovelBoundary 0 3.19 11.25 0.00 63.40 3.74 4.83 3.44 28.79 129.63 31.32 2.32 6.30 0.00 4.65 8.90 11.62 0.00 73.50 38.31 25.18 2.66 8.82 4.10 37 I4_AR1 ActiveIntronRegion 0 0.00 0.34 0.00 20.40 0.00 0.37 1.46 7.95 32.77 3.86 3.54 0.00 0.00 3.63 5.61 5.85 0.11 26.11 3.61 12.69 0.00 0.00 2.35 38 ER5a ExonRegion 0 30.00 41.25 8.92 178.09 190.77 81.33 53.11 178.11 879.27 164.21 211.98 136.35 175.63 173.80 71.47 146.68 113.01 256.58 268.17 235.29 5.83 57.46 43.95 39 E5a_E6a KnownJunction 0 43.93 58.48 7.30 183.33 195.93 84.72 56.84 226.61 864.14 179.95 185.63 82.23 256.64 162.87 66.63 126.98 90.79 324.46 235.40 219.36 2.41 26.70 39.52 40 E5a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 1.93 1.62 1.67 2.63 0.00 6.82 7.06 4.70 3.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 E5a_E6c KnownJunction 1 2.74 0.00 0.00 0.00 8.66 5.45 0.00 0.00 17.45 0.00 28.74 27.91 0.00 14.19 5.32 31.36 0.00 2.03 0.00 0.00 0.00 0.00 0.00 42 I5 Intron 0 10.26 6.43 4.08 55.77 37.61 8.59 13.56 35.10 164.48 26.26 13.38 8.69 21.38 17.54 8.63 22.35 9.17 29.34 20.65 22.03 0.72 11.58 5.76 43 I5_AR1 ActiveIntronRegion 0 7.43 2.25 3.04 34.90 19.78 7.45 12.23 25.26 122.08 18.00 9.64 6.59 3.01 17.39 5.42 19.77 9.76 33.11 15.89 19.26 0.41 13.47 4.34 44 I5_AR3 ActiveIntronRegion 0 5.33 11.00 6.13 70.21 66.10 20.04 7.36 38.47 178.36 23.15 14.10 9.94 38.74 16.36 3.87 25.43 3.18 17.11 24.78 22.30 0.98 9.72 7.29 45 I5_AR4 ActiveIntronRegion 0 8.25 14.18 6.22 84.88 102.78 15.51 25.80 53.53 242.52 34.12 16.80 1.72 28.55 10.06 11.90 23.51 10.63 35.49 22.53 22.03 1.13 14.31 5.10 46 I5_AR5 ActiveIntronRegion 0 16.90 10.58 6.17 82.98 50.39 10.39 15.95 49.90 248.66 42.57 18.85 10.58 37.07 25.55 15.96 31.58 12.58 42.93 34.57 31.78 1.30 15.79 10.92 47 E6_Aa NovelBoundary 0 12.89 9.21 10.73 115.80 93.63 27.43 29.37 50.36 246.44 34.95 6.90 0.00 34.41 17.78 13.35 22.56 13.28 49.45 24.66 24.29 0.00 10.65 16.90 48 ER6a ExonRegion 0 24.23 44.64 10.90 235.14 200.55 87.48 60.79 236.57 989.97 213.37 206.73 119.35 167.14 161.63 60.11 160.16 101.54 278.35 258.59 210.99 6.92 46.81 28.24 49 E6_Da KnownBoundary 0 42.67 76.57 11.62 277.82 145.84 60.31 48.67 272.07 1047.27 221.69 144.46 124.09 137.82 131.91 49.57 76.73 75.64 261.78 232.29 180.37 6.30 35.27 17.84 50 E6a_E6c KnownJunction 0 0.00 3.29 0.00 24.37 11.21 3.01 0.00 11.01 28.96 6.50 31.69 0.00 13.31 4.83 8.90 15.89 14.31 1.82 0.00 17.32 0.00 0.00 4.01 51 ER6b ExonRegion 0 55.48 54.58 11.84 246.06 243.80 102.28 71.73 259.41 988.99 231.05 149.38 95.84 177.12 128.51 50.64 133.34 77.97 202.97 202.17 188.38 4.26 33.07 38.20 52 E6_Ab KnownBoundary 0 87.42 45.12 15.67 235.10 434.89 148.72 104.93 282.59 881.96 229.67 140.09 110.14 375.95 100.07 46.36 114.16 82.75 112.79 161.23 154.81 0.00 34.41 24.50 53 ER6c ExonRegion 0 56.95 62.18 15.18 262.65 282.68 95.61 105.23 228.93 874.94 203.54 106.49 90.12 228.95 111.22 43.82 104.84 73.76 115.49 168.42 159.45 0.00 34.70 27.00 54 E6_Db KnownBoundary 1 70.09 63.67 14.93 300.56 352.80 133.79 119.55 257.86 979.82 220.56 69.81 74.27 241.70 51.56 13.35 109.80 71.25 123.61 161.32 191.75 0.00 20.76 25.61 55 E6b_E6c KnownJunction 0 0.00 0.00 0.00 0.00 3.90 0.00 0.00 2.42 2.52 3.49 0.00 6.30 0.00 9.65 4.45 7.95 4.68 0.00 0.00 0.00 0.00 0.00 0.00 56 ER6d ExonRegion 0 78.13 66.09 16.21 335.30 368.11 117.97 96.21 308.63 1076.97 219.50 119.53 119.58 174.23 92.76 50.14 77.40 63.04 71.85 142.58 185.18 0.79 58.85 23.88 57 E6_Ac KnownBoundary 0 213.30 87.35 28.36 564.73 1008.74 219.76 190.96 466.40 1317.43 250.84 152.78 120.04 208.59 112.84 97.78 88.69 106.22 190.31 356.53 224.22 0.00 60.19 47.04 58 ER6e ExonRegion 0 145.55 95.08 33.93 499.93 481.31 143.54 108.78 414.88 1331.95 295.31 212.26 127.69 291.82 147.23 105.38 152.65 87.47 130.69 233.35 222.67 0.82 66.39 34.22 59 E6_Dc KnownBoundary 1 264.05 113.01 35.78 596.09 546.10 141.74 140.22 513.88 1474.49 343.54 151.20 218.47 472.05 131.91 169.60 74.17 44.13 39.59 146.07 236.62 0.00 94.97 28.26 60 ER6f ExonRegion 1 76.93 50.69 22.97 340.91 228.60 44.45 49.77 332.47 949.27 210.82 64.28 82.82 237.91 48.40 87.05 35.50 20.95 14.66 54.35 108.76 0.30 57.35 7.23 61 ER6g ExonRegion 0 13.76 29.32 7.35 23.28 44.82 24.91 22.07 23.05 68.34 14.53 3.70 11.91 21.89 5.96 11.85 5.45 4.68 0.00 9.03 4.08 0.00 0.00 1.22 62 ER6h ExonRegion 0 4.23 6.10 7.35 9.54 10.70 12.84 9.27 13.83 25.94 11.47 0.00 8.66 0.00 1.62 2.90 2.97 3.30 0.00 3.19 2.13 0.00 0.00 0.00 63 ER6i ExonRegion 0 1.32 2.54 3.06 3.75 5.69 10.32 0.66 7.56 10.04 5.02 0.00 0.00 0.00 1.22 1.81 2.60 2.48 0.00 0.80 0.00 0.00 0.00 0.00 64 IG6 Intergenic 0 6.55 6.72 3.22 11.82 6.77 8.77 3.66 5.28 41.62 5.19 4.74 0.72 2.91 1.20 1.00 2.91 3.62 4.89 5.66 7.89 8.55 21.89 14.70 65 IG6_SR8 SilentIntergenicRegion 0 0.51 0.81 0.07 5.24 3.31 0.95 1.32 5.26 49.90 6.03 0.54 0.69 4.51 0.05 0.72 2.13 1.18 7.14 9.58 7.60 0.18 0.27 2.34 66 IG6_AR7 ActiveIntergenicRegion 0 0.50 0.32 0.00 4.00 3.96 0.14 1.14 6.59 47.60 6.62 0.31 2.16 2.97 0.09 1.29 0.47 0.00 3.94 8.36 6.04 0.00 0.77 1.37 67 IG6_SR6 SilentIntergenicRegion 0 1.21 1.37 0.06 4.88 4.77 0.22 0.85 5.78 55.72 5.33 0.46 0.51 1.56 0.25 0.26 0.99 0.34 1.28 6.27 4.32 0.00 0.42 0.75 68 IG6_AR6 ActiveIntergenicRegion 0 2.54 1.64 0.00 5.32 6.56 0.48 1.39 5.23 78.71 2.12 0.00 0.94 1.63 0.64 0.27 1.96 0.43 0.60 4.08 5.03 0.00 0.55 0.00 69 IG6_SR5 SilentIntergenicRegion 0 0.60 0.36 0.09 1.88 2.95 0.02 0.43 2.48 31.75 2.53 0.23 0.39 0.23 0.17 0.14 0.42 0.12 0.93 1.87 1.47 0.00 0.15 0.24 70 IG6_AR5 ActiveIntergenicRegion 0 0.75 0.00 0.00 0.00 0.95 0.19 0.12 1.46 28.50 1.19 0.00 0.00 0.00 0.00 0.00 1.05 1.17 0.65 5.64 0.75 0.00 0.00 0.00 71 IG6_SR4 SilentIntergenicRegion 0 0.11 0.28 0.08 0.98 1.73 0.01 0.49 2.04 20.25 2.35 0.20 0.07 0.03 0.12 0.05 0.17 0.13 1.97 2.35 1.44 0.10 0.27 0.04 72 IG6_SR2 SilentIntergenicRegion 0 0.77 0.56 0.23 1.08 1.08 0.25 0.71 1.12 15.11 1.16 0.23 0.04 0.11 0.04 0.04 0.03 0.03 1.17 2.45 1.76 0.54 0.27 1.19 73 IG6_AR1 ActiveIntergenicRegion 0 41.81 43.13 21.52 69.53 32.66 59.48 21.41 20.60 119.79 19.61 31.16 3.31 16.41 7.51 5.90 17.49 23.77 23.04 19.10 40.56 57.73 149.05 97.70