Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PLEKHG3 Gene 0 13.74 20.44 45.70 22.88 10.08 27.46 27.64 8.29 9.70 19.43 1.45 1.12 2.08 0.96 1.76 0.72 1.14 66.35 42.63 38.06 1.13 13.00 10.55 2 490180 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 247226 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 394691 Transcript 0 16.58 9.43 21.56 21.29 9.08 38.65 28.05 9.86 11.44 26.51 2.73 0.00 4.33 0.00 0.00 0.00 1.31 95.26 83.19 52.20 2.56 28.00 14.33 5 471489 Transcript 0 1.91 11.67 24.58 16.70 7.80 17.75 17.51 3.14 6.89 17.07 0.60 0.00 0.00 0.00 0.00 0.00 0.00 51.25 43.92 44.14 0.41 7.59 10.31 6 498805 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 1.42 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 471182 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 484731 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 492928 Transcript 0 3.04 13.35 25.46 20.48 0.00 13.69 18.02 6.74 9.49 7.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.79 7.72 18.15 0.00 2.39 10.41 10 ER1a ExonRegion 0 0.72 2.56 3.29 0.69 0.84 4.04 4.16 1.62 0.00 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.38 6.13 6.34 0.00 1.41 3.70 11 E1_Ab KnownBoundary 0 0.00 0.00 4.85 0.00 0.00 0.00 0.00 2.46 1.74 9.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.46 0.00 3.07 0.00 0.00 0.00 12 ER1b ExonRegion 0 4.98 0.02 7.05 1.34 1.28 6.22 0.82 4.75 1.85 8.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.46 13.01 11.00 1.05 4.79 4.31 13 E1a_E2a KnownJunction 0 0.00 0.00 10.97 2.03 0.00 8.18 4.02 12.40 5.76 5.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76.27 21.18 29.21 0.00 2.82 4.18 14 ER2a ExonRegion 0 3.55 7.61 20.33 8.89 4.95 19.94 13.44 4.45 8.28 16.54 1.80 0.00 0.87 0.00 0.00 0.00 0.00 66.99 44.42 46.58 1.09 10.55 6.05 15 E2a_E3a KnownJunction 0 24.30 11.45 21.26 20.61 17.06 35.66 21.86 8.46 11.00 25.73 6.84 0.00 6.66 0.00 0.00 0.00 0.00 145.75 123.96 64.68 2.35 54.13 16.82 16 E2a_E4a NovelJunction 0 0.00 0.00 4.58 0.00 0.00 2.16 2.25 2.09 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.92 21.84 11.19 0.00 3.12 0.00 17 E2a_E5a KnownJunction 0 0.00 0.00 1.83 2.06 3.31 0.00 0.00 0.00 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 18 ER3a ExonRegion 0 9.27 14.32 21.78 17.13 5.68 32.62 26.61 13.33 10.94 30.92 2.76 0.00 0.57 0.00 0.00 0.00 1.11 78.94 48.56 50.67 2.05 24.56 15.19 19 E3a_E4a KnownJunction 0 9.85 8.29 13.78 22.18 0.00 35.95 32.81 6.70 9.23 26.22 2.42 0.00 0.00 0.00 0.00 0.00 4.58 58.03 25.88 36.62 3.15 17.08 12.29 20 I3_SR1 SilentIntronRegion 0 1.40 0.69 4.05 4.15 0.95 4.06 6.96 0.92 0.98 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.42 6.25 6.18 0.00 1.86 0.79 21 I3_AR1 ActiveIntronRegion 0 1.18 3.12 10.29 7.14 1.22 5.10 6.78 1.21 2.38 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.62 14.50 4.85 9.44 0.00 1.55 0.13 22 ER4a ExonRegion 0 9.92 5.00 22.55 19.41 6.54 29.34 26.65 6.89 12.10 21.89 1.60 0.00 2.41 0.00 0.00 0.00 0.85 72.04 58.75 44.16 2.64 12.80 10.70 23 E4a_E5a KnownJunction 0 29.56 8.09 28.44 27.14 16.13 59.68 32.33 13.92 13.95 27.80 0.00 0.00 12.01 0.00 0.00 0.00 0.00 121.54 158.78 64.88 2.59 31.41 16.65 24 ER5a ExonRegion 0 23.46 9.43 34.05 33.84 7.46 66.48 36.54 16.70 14.35 25.09 2.22 0.00 12.87 0.00 0.00 0.00 0.84 135.36 156.49 82.16 1.92 45.00 22.56 25 E5a_E6a KnownJunction 0 15.56 33.28 35.07 34.66 7.56 47.36 36.35 12.73 10.42 14.05 4.63 0.00 19.80 0.00 0.00 0.00 4.02 110.10 61.27 96.77 0.00 33.37 23.82 26 ER6a ExonRegion 0 13.30 24.19 40.19 25.02 13.79 47.36 45.91 7.92 9.00 20.89 1.78 0.00 5.28 0.45 0.00 0.00 1.97 102.41 67.97 61.31 1.85 17.16 13.36 27 E6a_E7a KnownJunction 0 13.34 24.01 55.70 30.50 25.13 108.18 87.18 10.43 11.86 32.72 2.53 0.00 0.00 0.00 0.00 0.00 0.00 118.72 69.74 96.96 3.15 23.94 15.96 28 ER7a ExonRegion 0 11.27 28.38 50.21 29.95 21.63 72.98 53.80 4.53 12.82 31.09 3.15 0.00 4.87 0.00 0.00 0.00 0.00 130.78 85.09 80.75 1.79 19.16 21.00 29 E7a_E8a KnownJunction 0 14.00 22.30 46.15 24.27 3.82 26.80 25.97 9.36 11.17 26.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 110.51 128.57 95.11 3.15 14.82 22.71 30 E7a_E9a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 20.27 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.72 7.72 0.00 0.00 0.00 0.00 31 ER8a ExonRegion 0 16.90 18.30 70.36 35.89 13.04 44.83 38.37 12.16 17.11 36.69 4.27 0.00 3.90 0.37 0.00 0.00 1.05 142.80 117.67 86.21 1.23 24.77 20.01 32 E8_Da NovelBoundary 0 3.41 0.00 1.80 7.72 0.00 4.83 4.33 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.38 31.53 0.00 0.00 0.00 0.00 33 E8a_E9a KnownJunction 0 29.63 39.60 77.29 43.45 31.83 91.94 88.90 16.55 25.81 50.31 5.05 0.00 0.00 0.00 0.00 0.00 3.55 151.10 124.80 74.08 3.15 11.21 30.99 34 E9_Aa NovelBoundary 0 0.00 16.58 3.22 5.73 0.00 9.65 2.21 0.00 1.48 7.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.27 8.94 0.00 0.00 0.00 0.00 35 ER9a ExonRegion 0 24.97 39.67 78.37 44.14 24.46 84.16 60.89 16.99 16.93 36.07 5.38 0.00 1.97 0.00 0.00 0.00 3.37 150.24 121.90 85.63 0.50 28.12 22.36 36 E9a_E10a KnownJunction 0 17.04 26.44 95.35 52.37 12.31 15.79 42.75 7.27 19.01 40.32 2.58 0.00 0.00 0.00 0.00 0.00 0.00 113.38 72.66 37.84 0.00 10.78 3.84 37 ER10a ExonRegion 0 13.77 26.44 80.72 53.26 16.98 33.47 31.39 15.64 17.15 32.72 2.11 0.00 3.07 0.00 0.00 0.00 1.94 89.14 104.42 66.59 1.27 21.48 16.34 38 E10a_E11a KnownJunction 0 3.56 17.04 41.07 35.83 0.00 50.20 32.24 26.45 7.90 36.61 5.37 0.00 6.82 0.00 0.00 0.00 0.00 100.11 96.76 56.89 0.00 15.31 23.82 39 ER11a ExonRegion 0 1.43 18.00 51.93 39.56 12.20 45.52 34.73 16.88 12.93 29.95 3.30 0.00 4.69 0.00 0.00 0.00 0.00 89.51 90.60 58.32 0.00 17.10 22.72 40 E11a_E12a KnownJunction 0 3.56 17.96 47.84 26.87 18.93 34.64 38.91 1.93 13.43 11.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66.24 66.26 60.21 0.00 17.57 12.29 41 ER12a ExonRegion 0 7.55 21.40 63.58 39.11 7.68 40.97 29.11 12.27 13.36 23.71 2.11 0.00 2.23 0.18 0.00 0.00 1.70 86.97 49.16 44.85 0.00 13.17 10.89 42 E12a_E13a KnownJunction 0 17.19 9.14 35.51 30.17 28.78 53.38 30.21 5.09 12.90 31.46 0.00 0.00 0.00 2.47 0.00 0.00 0.00 41.20 53.46 52.35 0.00 5.20 7.77 43 ER13a ExonRegion 0 8.36 8.55 20.39 16.04 16.40 34.23 15.85 7.14 12.48 18.29 1.93 0.00 0.00 1.29 0.00 0.00 0.00 29.61 31.36 41.90 1.81 3.47 3.76 44 E13a_E14a KnownJunction 0 9.71 21.84 32.58 20.14 7.64 60.14 47.52 8.38 9.32 9.21 4.16 0.00 0.00 0.00 0.00 0.00 0.00 57.45 73.60 32.34 3.09 11.45 10.41 45 E14a_E16a KnownJunction 0 0.00 0.00 1.39 1.33 0.00 2.90 0.00 0.00 1.74 2.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.81 0.00 0.00 0.00 0.00 0.00 46 ER14a ExonRegion 0 0.32 1.32 7.11 4.02 2.81 7.15 3.05 4.06 7.16 4.87 0.58 0.00 0.00 0.00 0.00 0.00 0.00 13.40 6.21 13.30 2.09 1.35 0.00 47 E15_Aa NovelBoundary 0 19.86 16.77 10.47 12.72 3.65 29.59 28.04 0.00 0.00 6.45 4.53 0.00 0.00 0.00 0.00 0.00 0.00 26.20 32.28 51.26 2.41 13.90 0.00 48 ER15a ExonRegion 0 5.74 14.86 2.57 1.82 11.59 22.01 5.89 0.00 1.12 5.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.03 10.24 19.25 0.00 1.19 10.42 49 E15_Ab KnownBoundary 0 25.86 30.19 16.29 26.20 22.84 70.30 34.80 6.86 10.10 27.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 88.17 43.86 45.06 0.00 5.14 22.11 50 ER15b ExonRegion 0 3.68 7.88 12.84 4.48 5.78 23.05 7.06 3.03 3.00 10.42 0.72 0.00 0.00 0.00 0.00 0.00 0.00 34.81 11.37 17.02 0.05 8.98 5.87 51 E15_Da KnownBoundary 0 0.00 11.71 16.68 8.72 0.00 10.96 4.24 10.56 8.10 19.21 2.68 0.00 0.00 0.00 0.00 0.00 0.00 22.63 8.56 15.66 0.00 5.57 0.00 52 E15a_E16a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 1.42 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 ER15c ExonRegion 0 0.00 10.33 30.56 19.91 3.14 18.09 21.02 6.91 9.13 21.83 1.80 0.00 0.00 0.00 0.00 0.00 0.00 57.47 45.18 50.99 1.24 10.18 9.15 54 E15_Db NovelBoundary 0 0.00 0.00 0.00 1.96 0.00 0.00 0.00 4.72 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.88 4.80 0.00 2.59 0.00 12.04 55 E15b_E16a KnownJunction 0 0.00 9.80 40.60 28.37 8.66 13.17 25.61 2.51 10.42 23.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75.24 76.33 62.19 0.00 11.39 11.35 56 E16_Aa NovelBoundary 0 3.26 3.03 8.16 8.32 0.00 0.00 1.99 2.01 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.14 9.32 2.75 0.00 8.63 10.59 57 ER16a ExonRegion 0 11.66 13.58 62.36 31.33 17.39 42.29 40.37 5.38 13.76 37.95 2.27 0.00 0.00 0.00 0.00 0.00 1.48 140.70 75.50 50.00 0.00 24.14 16.15 58 E16a_E17a KnownJunction 0 17.04 11.58 78.26 39.92 31.92 94.89 68.89 6.24 19.76 32.80 2.37 0.00 0.00 0.00 0.00 0.00 0.00 107.03 84.99 82.84 0.00 8.76 15.88 59 ER17a ExonRegion 0 15.42 23.86 77.62 35.94 17.53 73.31 55.09 9.77 14.42 30.03 4.62 0.00 0.00 0.00 0.00 0.00 0.00 98.38 59.29 72.64 1.39 16.16 29.01 60 E17_Ab KnownBoundary 0 2.82 13.94 39.92 16.02 7.56 22.60 7.82 8.09 5.44 18.78 2.42 0.00 0.00 0.00 0.00 0.00 0.00 23.21 12.33 35.15 3.15 10.23 3.76 61 E17_Ac KnownBoundary 0 10.30 24.34 26.52 23.31 4.24 15.10 12.59 4.64 9.23 5.26 4.42 0.00 0.00 0.00 0.00 0.00 0.00 49.58 50.45 27.48 0.00 11.21 4.18 62 ER17b ExonRegion 0 10.58 41.69 77.81 41.57 10.70 38.51 31.78 12.10 14.20 27.53 5.80 0.00 0.00 0.00 0.00 0.00 0.00 98.85 70.08 65.96 2.20 26.04 17.62 63 ER17c ExonRegion 0 20.83 32.27 78.45 36.34 13.27 34.45 38.26 12.13 17.24 27.37 2.04 0.00 1.79 0.00 0.00 0.00 0.51 134.78 63.50 59.32 0.80 25.46 16.18 64 E17_Da KnownBoundary 0 17.41 14.21 82.14 31.13 24.87 22.94 29.50 14.05 5.21 30.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 97.42 32.47 28.83 0.00 23.33 7.00 65 ER17d ExonRegion 0 13.53 24.07 99.10 34.50 9.28 19.13 23.09 19.67 12.55 32.27 1.20 0.00 0.00 0.00 0.00 0.00 2.13 97.86 42.74 61.49 0.36 28.14 10.63 66 E17_Db KnownBoundary 0 18.52 28.35 102.72 56.70 19.78 38.67 21.11 19.96 21.87 38.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 138.74 77.93 61.68 2.72 15.74 4.35 67 ER17e ExonRegion 0 20.73 30.58 99.56 58.00 12.88 35.51 31.33 13.35 16.18 32.65 0.75 0.00 0.00 0.00 0.00 0.00 0.00 140.45 73.17 61.62 0.83 27.07 14.04 68 E17_Ad KnownBoundary 0 24.67 20.79 127.58 56.04 18.42 43.50 51.36 10.93 9.87 34.57 2.32 0.00 0.00 0.00 0.00 0.00 0.00 136.05 35.67 75.36 0.00 23.15 38.93 69 ER17f ExonRegion 0 26.46 37.30 131.57 54.55 18.03 56.85 37.52 23.20 18.07 39.90 1.78 0.00 1.73 0.00 0.00 0.00 2.43 121.32 40.57 90.03 0.00 19.57 33.77 70 E17_Dc KnownBoundary 0 34.30 54.14 113.24 46.05 17.06 67.35 51.32 27.97 20.89 33.47 2.68 0.00 6.82 0.00 0.00 0.00 4.77 95.80 56.10 110.83 2.29 16.59 39.61 71 ER17g ExonRegion 0 37.25 37.96 112.09 48.70 7.47 47.07 41.69 18.05 16.61 40.13 1.86 0.00 2.19 0.00 0.00 0.00 0.77 122.84 80.70 66.57 0.95 21.13 14.72 72 E17_Dd KnownBoundary 0 46.53 53.54 139.35 57.00 23.09 61.95 41.38 11.54 17.07 34.06 2.37 0.00 0.00 0.00 0.00 0.00 4.02 95.72 88.57 85.90 2.84 19.90 27.40 73 E17d_E18b KnownJunction 0 3.04 13.35 25.46 20.48 0.00 13.69 18.02 6.74 9.49 7.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.79 7.72 18.15 0.00 2.39 10.41 74 ER17h ExonRegion 0 23.39 33.95 90.71 33.63 12.44 38.51 34.63 15.51 14.39 32.42 1.69 0.00 0.59 0.00 0.00 0.00 0.94 106.85 56.76 50.38 1.63 19.35 16.69 75 E17_De NovelBoundary 0 3.63 2.96 7.98 2.90 0.00 7.72 0.00 0.00 5.01 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.49 9.04 0.00 0.00 0.00 0.00 76 E17e_E18a KnownJunction 0 19.04 14.87 125.84 28.27 7.98 25.44 24.78 27.31 27.11 31.13 5.26 0.00 0.00 0.00 0.00 0.00 0.00 127.22 51.20 40.01 0.00 22.41 10.50 77 ER18a ExonRegion 0 27.82 39.62 81.51 36.97 16.28 44.73 36.44 12.66 11.64 27.89 1.02 0.00 0.54 0.00 0.00 0.00 0.31 79.79 48.61 42.64 0.41 20.15 13.15 78 E18_Ab KnownBoundary 0 13.93 21.05 97.66 58.33 7.30 55.37 41.29 15.36 20.98 29.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60.52 67.20 71.08 0.00 13.66 15.71 79 ER18b ExonRegion 0 19.51 30.90 94.35 70.38 16.35 30.54 28.66 18.52 23.76 31.09 3.06 0.00 0.00 0.00 0.00 0.00 0.00 65.90 73.17 56.17 0.00 20.33 12.89 80 E18_Da KnownBoundary 0 25.78 37.16 35.78 55.74 37.61 8.06 43.81 5.09 20.05 14.37 7.11 0.00 0.00 0.00 0.00 0.00 0.00 39.34 36.42 28.83 0.00 8.33 7.77 81 ER18c ExonRegion 0 18.75 30.74 43.03 51.98 18.98 6.48 36.18 12.02 11.95 19.02 3.33 0.00 0.00 0.00 0.00 0.00 0.00 36.91 27.11 25.28 0.00 7.07 7.38 82 E18_Db KnownBoundary 0 19.04 35.78 62.30 51.48 19.02 15.28 38.51 16.02 8.19 20.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40.91 30.40 33.81 0.00 9.92 12.38 83 ER18d ExonRegion 0 42.58 56.37 37.77 31.35 27.51 30.70 36.49 7.40 7.71 15.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.63 54.79 40.04 0.00 6.42 10.81 84 E18_Dc KnownBoundary 0 7.56 3.09 7.18 3.30 0.00 10.51 22.35 0.00 7.61 8.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.08 21.55 17.26 0.00 6.25 0.00 85 ER18e ExonRegion 0 5.32 8.58 8.83 5.67 5.58 8.49 19.80 2.37 4.47 5.80 0.81 3.24 3.62 2.68 5.09 2.08 2.11 19.80 13.73 14.46 1.59 2.97 4.82