Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C14orf135 Gene 0 52.75 141.50 41.12 84.03 61.46 81.45 81.66 61.12 97.13 66.57 99.91 143.51 98.20 70.61 47.48 60.57 54.78 73.92 68.22 125.26 53.97 100.53 79.43 2 317623 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 391611 Transcript 0 14.50 24.25 15.19 17.50 12.35 6.62 21.97 16.47 17.92 12.39 34.56 41.34 46.21 27.47 21.71 22.83 23.71 38.55 26.47 43.06 23.34 29.26 31.67 4 406854 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 406949 Transcript 0 1.35 1.76 0.00 0.35 0.93 1.59 0.53 1.99 1.81 0.49 0.11 2.82 2.68 1.54 4.79 1.20 0.76 0.27 0.37 2.09 0.13 0.36 0.34 6 404681 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 483571 Transcript 0 1.76 7.54 4.28 9.32 6.38 3.43 8.45 6.40 16.74 8.24 12.04 30.93 18.84 8.49 6.73 3.45 7.25 11.40 3.32 30.26 3.15 12.71 9.21 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 1.06 0.00 0.00 1.84 10 ER1c ExonRegion 1 4.91 32.09 6.64 13.16 9.85 30.41 22.53 13.34 30.34 29.73 50.04 7.65 8.72 51.05 18.48 41.36 26.23 100.12 39.09 84.88 72.26 41.50 58.09 11 E1_Da NovelBoundary 0 6.00 14.14 9.43 9.79 4.33 6.81 4.50 19.55 14.47 7.98 12.58 6.30 0.00 18.95 4.45 11.62 20.48 39.42 21.55 17.83 21.56 2.33 11.44 12 E1a_E2a KnownJunction 1 3.78 52.62 9.58 21.24 8.49 2.90 12.41 19.96 46.15 24.26 88.29 48.02 25.32 126.26 22.62 54.52 29.36 124.40 59.77 105.21 47.57 56.15 89.29 13 E1a_E3a KnownJunction 0 10.67 13.09 0.00 15.12 18.25 23.79 7.77 14.50 32.15 56.33 13.37 45.01 20.62 24.02 8.90 19.31 54.51 17.45 30.21 52.60 42.50 44.70 42.43 14 E1a_E5a NovelJunction 0 0.00 0.00 0.00 1.93 0.00 2.38 3.49 2.55 4.28 2.71 0.00 0.00 0.00 0.00 0.00 4.10 0.00 9.37 19.20 2.81 0.00 3.06 0.00 15 I1 Intron 0 6.98 16.63 9.54 17.03 12.69 2.77 15.20 15.05 17.58 8.46 46.10 50.50 57.10 15.01 17.13 27.78 22.46 35.37 38.75 35.98 22.56 11.31 18.98 16 I1_AR1 ActiveIntronRegion 1 9.13 16.49 11.95 16.61 11.23 3.14 16.33 15.99 20.32 9.65 53.09 45.40 42.74 17.04 19.75 33.54 23.52 45.63 42.69 36.29 25.22 9.59 20.85 17 I1_SR1 SilentIntronRegion 0 3.99 16.88 6.18 17.68 14.79 2.27 13.65 13.78 13.80 6.81 36.43 57.83 77.48 12.20 13.48 19.78 21.05 21.06 33.33 35.65 18.88 13.77 16.41 18 I1 Intron 0 5.49 12.01 5.81 13.83 13.41 3.65 14.13 4.89 7.93 4.12 6.44 26.59 30.05 5.75 4.53 8.02 8.37 7.20 10.18 16.60 5.87 6.34 9.86 19 I1_SR1 SilentIntronRegion 0 10.46 20.85 12.73 24.44 18.71 6.79 18.90 7.50 14.59 6.16 6.57 14.84 32.67 7.29 8.57 7.83 5.74 7.07 9.06 14.54 3.54 5.48 11.49 20 I1_AR1 ActiveIntronRegion 0 9.53 31.09 12.39 33.55 15.08 7.49 15.53 6.45 8.63 6.60 7.28 30.80 47.13 6.94 5.44 6.79 3.75 4.69 8.24 14.05 0.82 6.73 9.68 21 I1_SR2 SilentIntronRegion 0 4.73 10.87 4.55 11.71 15.37 3.44 15.03 5.35 6.43 3.70 6.31 29.80 31.52 4.57 4.64 5.99 7.66 5.23 9.60 16.67 5.01 5.69 8.55 22 I1_AR2 ActiveIntronRegion 0 5.14 7.59 4.26 11.17 10.92 1.11 12.04 3.15 9.57 4.44 6.86 28.56 24.56 5.97 3.66 9.26 10.86 7.08 11.05 19.21 7.73 8.28 10.32 23 I1_AR3 ActiveIntronRegion 0 1.66 6.79 11.51 16.33 12.95 1.38 11.06 11.08 14.18 6.21 11.39 32.32 45.23 4.79 5.39 19.32 14.62 14.49 27.30 31.50 17.43 11.05 18.98 24 I1_SR3 SilentIntronRegion 0 4.06 7.31 4.02 8.48 8.56 3.41 11.62 3.25 6.55 2.88 5.77 21.46 22.86 7.01 2.95 11.13 10.42 11.89 10.86 15.47 8.39 6.21 11.09 25 E2_Aa NovelBoundary 0 0.00 3.03 1.71 8.06 8.66 0.00 3.80 1.89 7.09 0.00 9.53 40.51 20.45 10.42 4.57 15.72 9.54 0.00 25.22 11.63 11.80 0.00 4.10 26 ER2a ExonRegion 1 4.82 63.87 9.62 20.97 21.16 39.12 39.55 23.30 53.80 24.11 125.67 123.63 57.93 106.20 18.54 64.89 55.32 125.72 65.48 129.00 58.89 68.02 89.84 27 E2_Ab KnownBoundary 1 9.93 85.64 12.86 18.45 16.55 55.99 50.79 36.23 75.72 36.75 137.51 54.47 69.15 92.12 27.81 54.09 64.89 142.77 51.86 139.53 63.07 59.58 85.88 28 ER2b ExonRegion 1 15.80 193.27 17.21 52.90 37.39 43.80 76.49 35.49 71.03 44.94 131.78 189.56 146.77 99.71 30.37 52.36 67.97 87.30 79.56 178.17 43.85 108.96 93.67 29 E2_Da KnownBoundary 1 6.15 18.68 12.18 4.93 44.57 5.74 36.26 3.66 19.01 5.29 25.16 46.22 108.43 31.84 15.08 8.72 11.03 12.93 16.85 23.14 5.50 17.70 15.19 30 E2a_E3a KnownJunction 1 3.48 119.85 11.21 53.74 38.62 68.82 65.49 18.24 56.45 41.93 68.96 192.96 38.31 85.29 9.64 44.18 57.04 76.73 55.25 131.93 43.92 93.99 76.40 31 ER2c ExonRegion 0 14.50 24.25 15.19 17.50 12.35 6.62 21.97 16.47 17.92 12.39 34.56 41.34 46.21 27.47 21.71 22.83 23.71 38.55 26.47 43.06 23.34 29.26 31.67 32 E2_Db NovelBoundary 0 29.63 100.25 254.01 450.69 54.58 44.97 126.35 263.16 361.95 256.72 42.01 25.06 21.26 4.94 6.30 37.08 67.60 266.34 75.96 120.80 35.95 51.68 111.74 33 I2 Intron 0 3.04 12.63 2.08 6.97 5.34 3.35 9.78 6.10 9.48 5.64 10.96 32.34 39.75 10.43 2.69 7.32 6.40 7.49 7.61 18.97 4.19 15.66 12.93 34 I2_AR1 ActiveIntronRegion 0 4.01 14.87 4.05 12.99 9.15 2.51 15.30 6.46 15.05 8.02 11.59 33.70 53.12 12.36 1.42 6.79 7.48 7.11 6.50 26.49 4.65 23.51 17.56 35 I2_SR2 SilentIntronRegion 0 2.92 12.38 1.83 6.18 4.83 3.50 9.07 6.11 8.74 5.36 10.93 32.42 38.26 10.25 2.89 7.43 6.30 7.57 7.82 18.03 4.14 14.68 12.33 36 E3_Aa NovelBoundary 0 18.15 34.34 9.79 21.58 12.90 8.29 17.31 10.43 11.83 18.37 22.06 62.57 48.05 26.49 13.35 28.45 13.65 19.61 35.77 36.18 11.37 33.74 21.34 37 ER3a ExonRegion 1 26.20 178.45 17.98 67.70 68.53 98.74 99.41 46.33 103.90 91.57 130.11 181.50 136.95 128.06 21.63 103.02 91.31 119.67 91.42 166.25 134.87 126.72 142.64 38 E3_Da NovelBoundary 0 11.34 22.63 0.00 10.62 0.00 5.17 13.73 3.74 10.59 1.67 5.00 19.51 13.15 7.00 4.45 14.18 0.00 10.28 36.71 19.37 0.00 4.90 7.51 39 E3a_E4a KnownJunction 0 37.64 198.58 16.11 57.64 68.51 72.00 134.74 49.29 112.47 91.63 126.45 166.25 101.78 104.13 32.51 82.03 69.66 83.16 80.57 178.27 128.99 111.69 91.68 40 ER4a ExonRegion 0 34.36 144.29 28.10 83.05 89.20 128.89 129.79 62.09 156.32 102.51 157.76 246.06 166.59 115.98 44.01 83.97 91.05 78.82 78.29 196.40 77.18 161.24 93.16 41 E4_Ab KnownBoundary 1 59.27 167.27 38.88 100.59 125.21 196.19 146.71 100.22 209.98 140.78 182.94 405.73 130.35 75.34 31.28 118.43 88.64 79.47 97.04 198.08 56.77 212.11 103.37 42 ER4b ExonRegion 0 61.36 198.20 38.93 95.25 99.60 174.79 157.47 99.08 199.74 112.02 173.91 352.20 179.30 106.87 38.19 96.15 105.23 76.37 107.57 216.98 72.01 193.09 115.96 43 E4a_E5a KnownJunction 0 60.08 142.01 28.24 108.28 92.78 180.80 206.42 84.98 186.20 89.80 167.88 321.40 121.42 94.59 52.91 54.86 82.28 50.08 112.00 208.05 50.10 129.33 114.30 44 I4 Intron 0 15.96 27.84 3.62 15.32 10.09 9.10 18.94 11.76 13.14 9.15 13.43 40.33 33.16 8.65 4.23 13.57 10.48 7.49 14.54 21.11 5.25 29.77 16.90 45 I4_AR1 ActiveIntronRegion 0 16.09 28.06 3.65 15.44 10.17 9.17 19.09 11.83 13.24 9.22 13.53 40.65 33.42 8.71 4.27 13.67 10.56 7.55 14.65 21.28 5.29 30.00 17.03 46 E5_Aa NovelBoundary 0 33.64 59.46 8.90 23.31 15.11 33.56 25.35 20.91 17.45 13.46 26.22 12.15 52.92 9.48 15.20 16.32 4.49 15.05 14.31 34.39 17.67 27.49 41.23 47 ER5a ExonRegion 0 50.36 142.61 50.35 120.50 92.19 187.56 173.10 106.17 203.18 133.27 233.61 368.13 201.95 135.72 52.31 143.25 105.24 146.80 121.77 276.13 102.29 175.37 159.22 48 E5a_E6a KnownJunction 1 59.57 147.87 88.61 192.58 63.75 196.65 206.24 155.05 221.81 151.45 270.12 488.86 153.40 165.76 52.91 231.73 118.28 192.88 192.38 300.67 113.55 231.52 273.50 49 ER6a ExonRegion 0 45.89 141.64 73.18 168.03 57.31 148.60 128.05 146.24 230.98 151.49 279.48 353.57 166.03 147.54 66.99 176.17 133.99 222.72 222.52 307.43 131.30 284.99 265.82 50 E6_Da NovelBoundary 0 0.00 3.09 10.29 9.09 0.00 11.58 5.52 3.94 39.47 16.95 12.16 6.30 7.47 10.48 4.45 24.61 9.54 18.99 13.93 20.39 0.00 15.06 4.18 51 E6a_E7a KnownJunction 0 58.08 108.60 51.86 131.15 55.77 205.96 156.38 118.87 215.19 145.70 284.86 286.44 140.90 158.52 75.04 168.50 140.53 189.69 228.90 267.17 117.81 299.25 241.24 52 E6a_E7b KnownJunction 0 0.00 2.89 2.78 4.99 3.99 0.00 0.00 1.77 10.71 1.18 5.00 6.15 0.00 2.88 6.06 0.00 4.77 10.49 0.00 2.36 0.00 0.00 7.09 53 E7_Aa NovelBoundary 1 9.85 11.25 1.80 19.81 0.00 2.38 12.94 2.55 8.65 10.05 9.84 12.60 46.59 2.47 5.19 3.67 0.00 9.62 13.74 15.21 0.00 14.82 0.00 54 ER7a ExonRegion 0 44.19 111.68 58.87 136.65 73.83 166.76 116.72 144.84 207.68 140.04 277.31 250.05 162.33 123.43 54.12 119.61 166.19 196.05 153.61 251.54 120.30 174.04 215.93 55 E7_Ab KnownBoundary 0 77.94 156.35 98.93 201.01 69.69 180.18 145.83 191.28 262.79 161.52 280.76 215.77 164.60 124.02 69.84 99.20 181.21 207.72 98.54 271.33 137.83 106.55 197.87 56 ER7b ExonRegion 0 67.39 212.87 60.39 137.02 72.21 145.80 119.52 103.69 196.79 123.50 198.92 247.47 159.45 153.87 66.08 144.30 127.24 225.45 151.12 258.40 149.29 168.30 192.86 57 E7a_E8a KnownJunction 0 106.17 268.18 55.17 115.27 102.12 210.45 115.00 89.34 155.96 121.01 158.72 228.82 201.12 143.62 73.68 142.61 107.90 227.37 180.52 206.84 195.53 128.65 169.53 58 ER8a ExonRegion 0 105.58 252.67 65.51 161.33 92.65 183.98 148.81 107.98 179.46 122.22 201.13 238.75 172.40 161.72 83.47 140.43 136.99 199.22 144.66 286.31 168.10 166.32 152.20 59 E8a_E9a KnownJunction 0 132.99 374.67 58.99 174.37 122.16 209.99 174.35 111.15 253.32 164.56 272.70 222.22 214.60 149.74 66.14 146.80 126.60 197.36 113.32 339.53 98.10 191.11 130.61 60 ER9a ExonRegion 0 115.47 243.26 76.75 181.17 142.71 214.78 177.16 120.44 210.82 141.89 206.40 303.35 197.83 131.18 91.11 124.36 104.20 111.76 128.05 213.81 104.15 184.19 159.57 61 E9a_E10a KnownJunction 0 219.89 329.15 104.76 181.93 227.42 218.74 214.14 113.45 201.47 133.15 236.69 242.48 147.88 98.95 117.81 115.53 95.18 90.16 116.80 174.75 74.94 229.20 126.00 62 ER10a ExonRegion 0 177.87 313.46 106.12 241.08 203.11 267.48 214.43 132.28 215.80 145.61 191.83 294.06 144.61 111.91 139.46 102.98 86.53 90.71 116.29 193.89 59.42 216.03 119.37 63 E10_Da KnownBoundary 0 10.45 15.85 9.49 19.11 16.55 2.90 21.42 6.86 22.74 17.65 17.06 43.81 39.77 9.18 4.45 3.59 15.90 11.52 0.00 46.98 3.15 10.72 27.23 64 E10a_E11a KnownJunction 0 203.37 417.62 153.25 268.60 137.78 176.15 226.86 148.52 226.68 139.63 180.57 240.83 80.19 107.25 89.75 120.48 92.94 85.68 149.56 183.06 62.83 238.93 76.91 65 E10a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 ER10b ExonRegion 0 3.51 12.19 5.78 13.64 8.76 6.87 16.90 11.03 22.77 15.29 19.09 55.71 37.69 14.09 7.40 6.89 9.72 12.32 6.64 58.15 6.30 25.41 11.34 67 I10 Intron 0 25.20 28.63 15.57 18.95 23.25 10.92 27.90 18.03 19.25 16.22 11.82 32.88 30.34 8.39 8.94 6.93 10.09 14.58 8.97 35.09 4.61 26.82 11.34 68 I10_SR1 SilentIntronRegion 0 6.77 13.60 2.70 5.98 4.24 2.94 10.99 4.57 7.11 5.12 7.05 31.51 20.01 9.10 4.32 5.78 8.43 8.17 5.25 23.25 2.47 12.85 6.42 69 I10_AR1 ActiveIntronRegion 0 44.14 44.12 28.79 32.29 42.74 19.11 45.31 31.86 31.73 27.65 16.75 34.48 41.04 7.72 13.69 8.16 11.84 21.20 12.81 47.37 6.82 41.23 16.43 70 E11_Aa NovelBoundary 0 22.08 86.56 30.66 58.97 38.12 42.65 75.47 48.30 41.12 18.78 15.21 0.00 21.10 16.60 14.59 18.63 3.74 13.51 16.47 58.55 2.97 41.64 15.19 71 ER11a ExonRegion 0 189.43 476.42 144.13 254.91 173.06 165.61 172.18 182.10 217.38 159.25 116.27 218.68 125.58 77.83 124.78 77.53 54.47 58.86 107.77 179.87 41.21 211.15 85.80 72 ER11b ExonRegion 0 8.04 5.69 0.00 6.81 4.82 0.37 10.86 0.69 3.46 0.69 0.00 18.18 1.88 0.32 1.74 0.00 0.00 0.74 3.19 5.96 0.00 3.75 2.35 73 I11 Intron 1 8.82 20.89 5.29 22.62 16.74 13.99 20.47 9.56 22.18 12.34 2.95 38.75 19.48 6.93 5.61 6.65 4.20 8.38 10.20 44.47 1.46 11.44 12.39 74 I11_SR1 SilentIntronRegion 1 3.62 10.70 0.79 20.75 14.92 9.11 23.59 8.39 18.42 5.52 1.88 35.48 30.97 4.44 5.65 3.47 4.70 2.73 6.29 29.70 2.82 8.29 5.97 75 I11_SR2 SilentIntronRegion 1 9.80 22.78 6.11 22.98 17.06 14.88 19.95 9.76 22.88 13.57 3.15 39.31 17.35 7.39 5.59 7.24 4.12 9.35 10.94 47.11 1.21 12.01 13.55 76 ER12a ExonRegion 0 2.70 3.52 0.00 0.70 1.85 3.18 1.07 1.69 3.61 0.99 0.22 5.64 5.36 3.08 9.59 2.39 1.52 0.53 0.74 4.17 0.25 0.72 0.68