Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PSMA3 Gene 0 453.59 325.88 349.19 317.68 357.07 220.99 266.33 287.77 315.38 289.17 1003.16 905.14 461.56 1132.09 1583.04 814.00 826.64 202.91 271.00 292.51 219.14 556.83 266.19 2 216455 Transcript 0 658.23 331.98 246.90 200.57 193.29 130.22 135.11 199.44 216.44 180.98 878.38 731.42 420.53 1249.01 1462.16 765.67 771.30 187.39 233.00 199.49 227.28 416.03 233.60 3 412908 Transcript 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 3.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 IG39_AR1 ActiveIntergenicRegion 0 4.84 13.37 3.88 14.87 15.26 3.06 7.02 7.31 15.29 10.46 0.00 1.57 2.03 0.52 0.00 1.46 0.00 0.30 2.00 5.86 0.36 1.68 0.48 5 IG39_AR4 ActiveIntergenicRegion 0 4.10 1.90 0.00 0.00 1.05 0.09 3.02 0.00 3.74 1.10 8.73 2.14 0.00 9.37 5.62 5.08 12.83 0.00 1.98 1.08 8.54 0.24 0.00 6 ER1a ExonRegion 0 272.75 206.75 15.71 30.26 153.29 158.32 153.49 11.52 24.18 23.50 90.67 10.01 3.75 254.01 370.59 239.22 189.40 20.69 60.10 53.43 43.14 166.13 107.61 7 E1_Ab KnownBoundary 0 945.13 701.72 34.48 85.37 584.89 515.27 524.12 36.97 66.43 63.74 207.21 12.45 6.17 697.45 1003.53 638.55 476.86 74.16 153.13 148.22 108.54 362.38 299.03 8 ER1b ExonRegion 1 1081.92 743.64 168.97 215.81 512.57 456.53 499.17 145.11 179.00 187.41 726.59 28.93 36.88 979.96 1409.44 1455.53 928.85 234.36 401.40 325.08 195.73 684.88 537.98 9 E1a_E2a KnownJunction 1 953.50 860.90 297.30 332.19 603.91 363.37 604.50 272.57 277.77 250.38 1067.69 24.76 58.44 1089.59 1409.73 1502.51 933.89 374.95 737.90 393.67 200.59 479.46 424.34 10 ER2a ExonRegion 1 313.24 204.04 244.56 229.34 181.05 111.55 181.06 197.81 225.27 212.58 1006.11 276.62 158.05 454.89 580.64 490.65 851.51 211.56 236.02 178.31 237.15 229.64 152.88 11 E2a_E3a KnownJunction 1 235.00 67.88 368.73 305.09 149.66 66.27 99.50 263.57 277.98 317.88 1922.70 493.66 126.29 698.51 1049.02 503.20 1730.06 196.99 237.18 325.98 450.67 587.47 233.21 12 ER3a ExonRegion 0 183.51 144.61 389.34 392.58 467.57 194.00 207.17 336.95 374.12 337.90 1355.41 791.04 372.03 1386.00 2016.04 1621.46 1114.27 383.94 459.62 412.68 266.40 788.12 535.32 13 E3a_E4a KnownJunction 0 238.34 208.52 408.94 311.55 862.99 544.52 638.28 339.56 364.32 302.73 809.68 722.49 305.17 724.12 1607.77 591.30 998.78 248.14 177.51 360.81 252.48 446.70 185.75 14 ER4a ExonRegion 0 354.25 507.42 395.96 358.40 593.33 466.61 545.60 321.24 339.49 310.17 1316.17 1234.49 462.24 1118.65 1627.38 758.15 1105.22 219.63 229.66 309.30 316.06 417.58 215.09 15 E4a_E5a KnownJunction 0 995.51 743.95 496.88 449.59 480.65 420.21 469.76 342.76 368.49 353.05 1631.83 1799.09 726.41 1528.00 1991.97 921.89 1196.17 306.22 208.57 327.06 408.16 422.69 242.09 16 ER5a ExonRegion 0 910.87 540.08 496.32 411.65 310.57 218.89 256.26 383.30 382.23 371.57 1643.51 1524.97 612.11 1953.46 2260.62 1057.11 1287.80 325.33 335.24 405.86 421.92 659.49 307.04 17 E5a_E6a KnownJunction 0 1269.11 608.71 515.89 405.91 327.25 200.62 193.79 421.91 429.77 348.88 1675.16 1528.85 956.11 2469.67 2896.85 1449.79 1457.97 357.04 444.06 376.73 432.44 812.14 412.73 18 E5a_E6b KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 3.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 I5 Intron 0 44.17 53.77 23.45 72.19 57.86 17.87 43.50 37.59 55.58 28.28 11.04 42.19 39.46 14.82 30.94 21.44 21.65 12.83 19.28 42.29 5.16 20.21 21.26 20 I5_SR1 SilentIntronRegion 0 44.10 61.11 24.91 77.07 58.90 18.09 44.72 41.45 60.90 30.25 12.40 43.90 38.62 16.00 32.94 23.42 25.81 15.30 20.01 50.14 6.91 21.79 23.31 21 I5_AR2 ActiveIntronRegion 0 24.34 38.72 25.79 82.22 74.60 26.60 46.85 39.32 65.37 38.54 7.23 54.85 57.27 11.89 19.18 17.44 13.24 8.01 14.32 33.85 1.88 23.93 18.58 22 E6_Aa NovelBoundary 0 132.76 100.71 53.37 103.48 101.19 41.11 82.58 40.99 61.92 30.43 12.06 37.36 56.65 21.48 22.87 28.37 17.39 15.42 26.82 45.83 3.15 23.09 19.46 23 E6_Ab NovelBoundary 0 1366.98 545.10 406.08 366.65 270.71 152.81 246.52 322.51 395.83 305.93 1539.60 1169.93 647.36 1929.79 2468.27 1235.23 1292.19 328.35 382.13 330.90 398.71 539.04 383.37 24 ER6a ExonRegion 0 1082.60 506.36 454.78 360.67 276.57 156.46 190.53 355.67 405.62 344.64 1745.76 1373.82 708.19 2264.24 2575.39 1373.66 1431.24 371.82 421.48 359.28 433.53 681.69 411.13 25 ER6b ExonRegion 0 736.26 380.84 438.59 373.54 279.64 129.12 214.77 303.90 378.41 313.06 1573.19 1339.33 602.16 1783.70 2131.45 1079.11 1162.37 304.19 360.63 323.03 378.30 518.59 350.78 26 E6a_E7a KnownJunction 0 490.61 295.47 523.19 453.49 348.05 165.08 216.53 341.82 381.59 317.35 1301.28 1156.88 358.42 1720.71 2023.12 815.77 909.77 282.55 212.99 332.37 317.84 532.55 320.28 27 I6_AR2 ActiveIntronRegion 0 45.28 85.29 17.37 61.47 66.76 12.46 38.00 28.00 39.05 24.49 4.05 34.08 21.65 6.63 10.98 8.26 5.96 5.27 8.42 33.30 2.88 15.75 13.85 28 ER7a ExonRegion 0 455.18 236.11 449.32 342.93 373.19 205.72 214.82 329.09 348.45 329.56 1155.49 1344.50 458.13 1656.82 2026.35 818.46 978.22 242.45 270.23 334.88 330.26 511.76 253.49 29 E7a_E8a KnownJunction 0 502.90 241.34 402.11 352.47 433.79 249.40 267.41 354.67 361.80 330.83 1093.28 1198.89 631.13 1604.52 2375.43 916.08 1084.62 206.85 387.87 286.41 285.91 788.93 254.55 30 I7 Intron 0 333.15 194.00 184.08 276.36 310.07 123.98 212.33 193.47 181.03 150.98 73.46 159.13 163.81 101.19 103.39 94.93 84.71 49.00 71.97 141.72 22.91 105.79 50.17 31 I7_AR4 ActiveIntronRegion 0 552.14 308.40 305.76 449.34 507.92 202.32 341.50 317.06 288.70 245.87 118.55 245.92 255.23 166.30 163.03 141.80 131.64 75.04 113.30 216.88 35.58 171.19 72.76 32 E8_Aa NovelBoundary 0 158.99 179.97 96.95 151.16 294.14 121.58 164.15 110.04 126.50 101.19 15.11 155.30 109.73 50.56 54.52 27.77 56.01 23.21 53.55 80.79 12.05 77.77 58.99 33 ER8a ExonRegion 0 269.74 219.11 434.77 344.72 393.16 226.88 216.40 327.89 350.25 315.81 1024.64 1263.84 586.95 1625.71 2332.24 754.03 810.62 151.52 252.25 255.05 235.42 743.42 242.80 34 E8_Da NovelBoundary 1 793.03 441.50 104.64 243.16 719.27 241.17 797.76 168.49 213.83 171.49 81.70 243.38 243.98 197.89 95.93 161.84 89.39 65.04 50.17 212.52 38.30 184.68 58.13 35 E8a_E9a KnownJunction 0 305.68 225.95 462.25 330.93 421.90 265.13 232.83 324.53 341.11 315.57 1281.43 1257.86 604.83 1871.69 2922.19 796.20 738.94 159.39 256.76 290.06 234.82 749.99 330.01 36 I8 Intron 1 143.10 115.03 105.08 215.26 217.90 93.01 201.79 143.31 201.26 124.24 67.67 234.86 275.85 125.08 98.26 106.74 87.93 58.80 60.06 177.63 26.56 121.25 54.46 37 I8_AR1 ActiveIntronRegion 1 150.76 127.83 116.11 248.25 244.58 99.84 216.13 162.32 224.57 139.48 67.91 270.17 312.06 129.39 95.54 107.02 88.22 59.50 60.95 186.66 26.18 131.89 52.43 38 I8_SR1 SilentIntronRegion 0 169.55 94.49 92.99 192.04 191.97 109.09 197.69 119.19 225.83 130.36 63.15 179.19 210.94 140.79 119.33 150.23 102.16 72.12 59.02 173.20 16.88 113.44 64.87 39 I8_SR2 SilentIntronRegion 0 99.57 63.44 42.42 83.26 121.66 64.42 113.07 48.12 87.35 49.30 78.12 98.46 115.56 109.70 94.18 91.90 94.21 56.66 61.83 125.89 33.44 59.38 62.66 40 I8_AR2 ActiveIntronRegion 0 126.04 101.49 102.77 166.45 175.45 75.15 198.96 132.33 162.26 103.34 62.32 192.85 249.93 109.59 103.79 95.80 76.96 51.64 55.69 174.01 28.08 118.40 54.01 41 E9_Aa NovelBoundary 1 95.87 125.50 234.08 380.84 199.15 45.77 191.89 252.56 251.59 176.08 58.80 364.62 395.59 132.56 140.18 91.86 55.26 42.57 97.23 271.33 8.22 178.62 69.31 42 ER9a ExonRegion 0 224.51 210.48 482.67 369.44 318.41 250.02 197.91 351.51 409.22 378.53 1170.06 1251.85 849.79 1474.10 2071.54 702.60 823.52 139.97 318.02 368.08 181.64 644.54 256.22 43 E9_Da NovelBoundary 1 164.33 184.44 155.76 310.42 312.14 171.66 335.15 236.46 283.76 147.69 82.81 326.51 371.57 145.62 70.46 140.90 146.24 36.98 111.34 333.01 29.59 139.67 75.03 44 E9a_E10a KnownJunction 0 196.26 174.31 494.13 366.69 247.37 185.18 249.87 335.90 411.63 391.65 1003.10 1259.96 466.37 1072.99 1808.27 523.11 668.44 102.10 220.81 241.93 107.93 486.99 204.79 45 I9 Intron 1 127.94 135.89 129.50 258.00 189.45 71.61 221.56 163.91 207.85 132.70 37.63 166.44 264.26 100.90 71.48 82.89 53.74 58.16 63.46 204.42 15.30 121.92 49.14 46 I9_AR1 ActiveIntronRegion 1 128.50 136.49 130.08 259.15 190.28 71.93 222.52 164.63 208.78 133.29 37.79 167.15 265.41 101.33 71.78 83.25 53.98 58.42 63.74 205.33 15.37 122.43 49.36 47 E10_Aa NovelBoundary 1 181.59 143.07 111.73 185.32 407.89 104.83 262.86 175.43 218.20 170.14 100.76 185.01 236.51 172.05 107.67 107.15 108.84 62.59 133.93 253.69 62.21 126.26 87.50 48 ER10a ExonRegion 0 163.56 179.61 386.41 333.07 236.70 138.13 182.36 332.98 379.35 361.29 687.34 894.93 451.33 879.02 1486.11 456.61 437.19 89.26 200.53 235.84 64.08 733.88 147.51 49 E10_Da NovelBoundary 1 95.65 96.17 121.61 174.37 203.65 71.44 286.53 151.19 206.05 158.08 40.85 185.01 238.62 130.50 52.78 118.43 70.03 56.04 111.63 154.49 55.41 76.11 54.29 50 E10a_E11a KnownJunction 0 197.00 144.51 409.33 370.12 132.09 42.99 86.78 406.39 401.30 356.06 484.07 641.01 342.67 582.44 1434.95 274.71 275.46 48.33 143.25 221.86 25.64 1047.83 92.53 51 I10 Intron 1 260.57 128.77 79.38 102.66 150.20 56.49 146.82 116.37 126.42 93.61 40.36 118.16 175.78 86.67 59.41 89.53 53.86 55.19 83.97 121.86 20.12 77.50 50.26 52 I10_AR1 ActiveIntronRegion 0 326.01 105.90 36.35 54.52 178.81 61.46 156.21 88.73 83.16 82.96 31.10 58.60 67.94 80.54 45.20 101.00 41.30 46.27 101.16 58.99 16.25 66.14 58.46 53 I10_AR3 ActiveIntronRegion 1 194.01 153.89 125.32 154.16 121.36 51.72 138.16 146.49 173.02 105.66 50.41 181.76 290.67 93.75 74.84 78.23 67.49 65.08 66.66 189.01 24.36 90.12 42.10 54 E11_Aa NovelBoundary 1 141.58 220.95 158.60 226.74 230.39 43.67 255.22 196.87 235.88 130.25 18.37 145.10 346.89 55.33 77.63 67.33 47.03 19.07 44.33 200.12 8.59 72.01 41.23 55 ER11a ExonRegion 1 474.45 312.15 261.31 289.85 311.60 126.57 245.81 280.14 287.45 250.09 296.66 806.64 654.92 447.54 950.01 213.08 239.04 42.58 107.91 214.66 21.27 497.21 77.14 56 ER11b ExonRegion 0 8.47 6.10 1.23 5.45 16.05 5.50 2.65 8.64 6.18 6.88 1.93 12.99 14.07 8.12 5.80 0.00 6.60 0.00 6.37 8.51 0.00 4.17 2.94 57 IG40 Intergenic 0 77.17 99.27 52.24 89.90 91.66 43.95 120.84 81.41 109.43 66.92 34.97 81.92 92.75 60.89 41.40 60.19 53.05 42.43 51.49 106.63 19.61 49.06 40.78 58 IG40_AR1 ActiveIntergenicRegion 0 93.33 105.91 70.98 99.73 114.02 57.78 145.92 126.62 145.53 99.28 46.90 166.39 175.42 75.89 45.02 53.67 71.37 37.03 63.88 139.30 15.75 84.09 41.23 59 IG40_SR1 SilentIntergenicRegion 0 36.19 55.31 26.10 46.34 39.07 35.03 52.96 34.14 53.36 30.62 16.43 91.14 130.15 33.54 16.10 29.42 18.82 4.62 40.14 74.47 7.16 17.08 32.45 60 IG40_AR2 ActiveIntergenicRegion 0 108.99 143.20 72.77 131.88 127.54 60.26 173.65 109.17 153.17 90.40 49.71 96.58 113.19 87.73 58.02 93.30 73.67 66.59 72.01 148.84 31.15 65.04 60.63 61 IG40_SR2 SilentIntergenicRegion 0 16.60 21.02 6.88 14.78 13.87 7.64 14.07 11.02 18.80 8.36 2.68 8.37 10.07 7.41 10.47 5.57 7.07 3.48 9.65 17.85 1.75 3.02 4.50 62 IG40_AR3 ActiveIntergenicRegion 0 9.31 17.08 7.30 7.31 25.14 9.17 20.35 9.27 9.20 11.96 4.25 17.64 16.77 4.99 11.64 6.54 9.90 3.86 8.28 13.18 1.32 4.58 7.64