Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SIP1 Gene 0 44.24 57.84 56.08 66.16 60.35 59.87 53.02 54.21 60.75 56.17 98.86 100.09 59.19 114.84 157.67 130.01 76.83 37.41 46.68 59.99 14.40 19.38 17.40 2 308317 Transcript 0 6.67 10.90 6.30 10.40 10.64 6.62 7.72 6.96 12.17 9.57 1.84 11.30 8.89 3.39 7.29 6.49 1.25 1.30 3.18 1.55 0.49 0.79 1.11 3 396249 Transcript 1 10.30 8.55 3.67 2.63 4.24 0.00 8.13 13.76 14.55 2.77 18.95 12.30 12.99 26.78 20.03 32.21 0.00 4.56 3.67 6.01 0.00 2.39 0.00 4 250379 Transcript 0 6.67 10.46 5.29 3.40 7.22 21.41 9.80 11.95 17.45 19.42 19.16 17.86 15.75 33.73 23.86 15.72 4.68 9.82 13.46 14.06 0.00 8.45 0.00 5 412033 Transcript 0 2.89 5.06 10.91 23.24 30.90 18.06 16.65 21.60 23.67 15.93 6.42 0.00 0.00 0.00 0.00 3.33 4.21 9.99 0.00 17.51 2.53 0.00 0.00 6 ER1a ExonRegion 0 1.86 1.62 0.00 0.42 1.40 0.65 0.96 0.02 0.06 0.30 1.91 0.00 0.00 4.35 7.05 5.45 2.20 1.17 0.87 0.18 0.97 0.00 0.00 7 E1_Ab KnownBoundary 0 10.45 2.89 0.00 3.36 8.66 4.77 6.40 0.00 0.00 2.20 14.21 0.00 0.00 11.71 38.69 27.77 0.00 4.27 4.80 0.00 2.78 0.00 0.00 8 ER1b ExonRegion 1 65.54 76.96 33.62 48.37 66.05 83.35 82.28 33.62 46.35 44.54 113.39 0.44 9.96 119.27 177.27 299.32 123.25 36.75 91.02 75.38 34.81 21.47 42.86 9 E1_Da KnownBoundary 0 30.75 28.94 54.76 50.74 15.87 27.54 55.82 40.95 65.10 65.89 35.32 0.00 6.01 13.13 56.74 109.03 58.34 32.83 60.24 47.30 27.92 10.59 14.60 10 E1a_E2a KnownJunction 0 2.89 5.06 10.91 23.24 30.90 18.06 16.65 21.60 23.67 15.93 6.42 0.00 0.00 0.00 0.00 3.33 4.21 9.99 0.00 17.51 2.53 0.00 0.00 11 ER1c ExonRegion 0 8.49 8.85 15.01 16.92 3.95 7.75 9.85 9.96 20.41 19.54 32.98 11.31 3.28 24.91 33.40 35.44 27.77 3.74 10.07 17.37 9.92 2.89 2.97 12 E1b_E2a KnownJunction 1 0.00 3.22 8.99 12.15 4.33 10.45 5.79 7.31 18.81 25.79 108.55 0.00 0.00 58.39 65.02 14.18 92.19 3.81 3.58 30.49 33.42 2.39 0.00 13 E2_Aa NovelBoundary 0 16.82 2.70 5.03 13.02 8.15 5.00 1.81 3.82 21.38 10.72 2.68 0.00 20.78 4.94 14.09 3.16 4.39 4.19 8.00 11.44 2.47 0.00 4.35 14 ER2a ExonRegion 0 17.55 10.96 54.41 53.12 18.67 15.66 14.56 46.87 58.31 48.67 168.16 76.56 49.16 208.02 217.29 310.22 160.54 99.41 124.42 94.14 42.86 22.67 52.76 15 E2_Da NovelBoundary 0 49.34 8.62 3.67 8.89 33.45 7.67 33.83 7.23 10.30 7.55 2.42 0.00 7.30 0.00 11.99 11.11 0.00 5.14 4.80 20.13 3.15 0.00 7.85 16 E2a_E3a KnownJunction 1 7.04 3.35 72.23 68.69 20.29 15.50 23.49 39.97 53.56 49.32 99.87 175.41 180.67 219.20 307.68 954.88 51.05 143.97 297.99 96.64 20.70 31.23 139.48 17 E3_Aa NovelBoundary 0 3.41 26.90 1.33 12.35 0.00 5.22 10.20 11.30 10.13 8.95 0.00 6.30 0.00 4.94 0.00 4.36 4.77 0.00 0.00 3.00 0.00 5.27 4.01 18 ER3a ExonRegion 1 21.94 12.63 70.72 86.35 49.62 58.64 38.66 56.04 62.84 65.86 123.13 147.63 104.38 172.68 191.39 332.09 85.02 104.38 80.45 77.87 19.96 16.83 40.20 19 E3a_E4a KnownJunction 0 36.08 23.22 54.20 65.09 63.24 113.23 104.31 32.74 72.40 67.75 144.09 97.83 65.74 143.92 126.09 65.54 86.77 56.83 26.54 82.33 11.12 17.64 8.02 20 ER4a ExonRegion 0 37.07 63.38 55.10 58.81 76.12 86.80 98.79 45.43 74.09 65.51 129.83 104.34 61.52 150.69 128.77 78.71 99.85 41.76 41.83 64.72 20.13 11.46 12.68 21 E4a_E5a KnownJunction 0 85.87 118.47 62.56 68.79 166.47 111.58 87.04 74.88 70.77 69.68 178.68 113.44 77.43 197.31 173.06 107.41 102.29 32.96 46.68 74.02 11.24 25.29 23.99 22 ER5a ExonRegion 0 59.78 95.24 59.22 60.06 76.80 105.77 63.65 60.53 73.26 76.39 131.62 217.08 89.28 198.30 175.42 136.72 117.47 34.38 45.85 50.30 15.79 21.53 12.11 23 E5_Da NovelBoundary 0 7.11 9.14 8.31 10.26 35.57 0.00 7.46 7.06 41.00 9.62 0.00 20.41 7.79 2.47 4.45 0.00 3.83 4.06 0.00 5.82 0.00 0.00 0.00 24 E5a_E6a KnownJunction 0 75.42 84.72 62.59 61.36 41.09 41.00 34.84 44.65 55.73 72.88 156.46 173.01 107.46 174.94 178.75 101.77 105.75 26.41 47.72 54.20 11.74 21.68 4.35 25 E5a_E7a KnownJunction 0 6.67 10.46 5.29 3.40 7.22 21.41 9.80 11.95 17.45 19.42 19.16 17.86 15.75 33.73 23.86 15.72 4.68 9.82 13.46 14.06 0.00 8.45 0.00 26 I5 Intron 0 3.03 8.07 2.32 6.61 7.75 3.64 9.72 6.54 13.81 6.79 1.53 4.29 14.88 1.40 5.26 5.31 3.54 2.01 2.02 4.48 0.79 0.74 0.93 27 I5_SR2 SilentIntronRegion 0 3.37 8.81 2.64 7.28 8.40 3.74 10.55 7.57 16.41 7.83 1.83 5.38 18.09 1.29 6.08 5.77 4.11 2.15 2.22 5.40 0.88 0.62 0.73 28 ER6a ExonRegion 0 55.69 57.35 48.61 68.57 51.31 50.49 53.34 44.33 53.74 62.16 133.67 199.35 94.22 164.83 187.10 115.85 98.15 31.37 36.88 56.93 13.22 15.14 12.46 29 E6a_E7a KnownJunction 1 60.75 50.25 37.61 69.02 77.50 77.63 72.16 46.45 43.78 47.98 105.71 134.89 28.08 174.11 254.16 148.85 103.41 39.26 37.74 46.79 11.24 25.11 23.73 30 E6a_E8a NovelJunction 0 2.82 2.63 0.00 1.66 0.00 0.00 0.00 6.04 2.95 0.00 10.06 0.00 0.00 27.67 31.77 4.19 19.82 2.45 0.00 0.00 2.29 0.00 0.00 31 E7_Aa NovelBoundary 0 7.11 9.08 13.99 15.42 28.95 2.84 12.94 1.89 15.34 7.28 0.00 0.00 13.64 2.12 15.08 3.42 4.68 0.00 0.00 0.00 0.00 0.00 0.00 32 ER7a ExonRegion 0 71.62 93.84 52.21 71.66 83.18 60.28 60.75 76.68 55.78 82.33 141.24 144.00 83.81 164.44 194.01 176.09 108.74 58.99 63.48 59.64 18.43 26.21 23.02 33 E7_Da NovelBoundary 1 2.96 9.34 12.95 23.57 52.21 10.85 21.90 21.03 34.35 12.63 0.00 30.76 25.97 2.24 4.45 0.00 4.77 2.57 4.80 2.49 0.00 5.82 0.00 34 E7a_E8a KnownJunction 1 56.53 105.97 61.80 81.81 61.97 70.98 65.98 71.96 49.85 93.16 177.15 167.30 40.42 180.88 199.64 158.51 111.36 56.04 63.72 58.61 22.67 30.92 20.15 35 I7 Intron 0 11.60 12.82 6.54 13.22 21.94 6.34 10.36 8.49 18.35 10.14 2.31 14.17 17.10 4.86 11.87 7.96 2.58 1.93 4.07 5.61 0.91 3.78 1.33 36 I7_AR1 ActiveIntronRegion 0 13.51 24.90 9.24 23.54 36.22 8.87 16.61 12.78 31.33 18.43 2.85 22.90 28.00 5.62 17.55 10.94 3.62 3.43 8.51 11.89 1.59 7.62 2.64 37 I7_SR2 SilentIntronRegion 0 41.32 30.07 16.48 30.29 35.68 8.43 15.16 19.09 31.99 24.01 3.85 24.24 26.47 1.64 19.74 7.44 1.76 2.19 2.53 7.89 1.13 5.28 1.15 38 I7_AR2 ActiveIntronRegion 0 28.69 9.74 10.38 23.43 36.98 8.97 17.23 15.11 32.59 16.58 8.50 18.35 24.93 5.81 22.12 17.02 3.49 1.36 6.60 4.67 1.52 5.58 2.35 39 E8_Aa NovelBoundary 0 6.67 9.14 12.27 21.08 56.11 28.28 20.27 15.24 36.43 11.34 14.58 31.36 20.45 7.53 26.08 18.54 4.77 0.00 3.95 5.31 2.90 3.12 3.59 40 ER8a ExonRegion 0 62.75 103.47 58.37 77.82 89.94 86.21 83.22 64.02 65.11 72.03 127.80 131.48 74.87 183.09 220.97 145.50 99.35 45.44 46.26 70.06 25.29 37.05 7.59 41 E8_Da NovelBoundary 0 2.96 15.00 5.32 9.52 19.69 22.03 20.18 8.50 19.73 6.53 0.00 6.30 6.82 2.24 4.45 4.36 0.00 0.00 0.00 13.36 3.15 2.94 0.00 42 E8a_E9a KnownJunction 0 74.46 85.12 70.70 96.89 122.41 139.24 102.06 74.30 68.00 80.72 131.98 112.99 137.49 181.71 339.33 162.18 129.59 51.73 35.95 70.37 20.14 29.39 14.68 43 E8a_E10a KnownJunction 1 10.30 8.55 3.67 2.63 4.24 0.00 8.13 13.76 14.55 2.77 18.95 12.30 12.99 26.78 20.03 32.21 0.00 4.56 3.67 6.01 0.00 2.39 0.00 44 ER9a ExonRegion 0 48.03 62.77 73.17 98.04 123.04 122.15 86.26 76.43 71.87 83.51 138.74 110.58 68.52 140.56 248.52 153.09 123.25 52.30 69.81 77.10 19.31 25.32 20.86 45 E9_Da NovelBoundary 1 6.96 8.62 5.00 11.19 45.16 9.88 15.99 2.55 34.14 5.96 8.05 0.00 25.97 6.95 21.39 10.34 0.00 7.21 4.71 3.13 0.00 2.51 0.00 46 E9a_E10a KnownJunction 0 38.90 67.55 96.54 103.02 94.48 117.77 64.48 83.71 76.59 80.40 143.09 132.19 68.83 142.86 242.78 133.38 91.63 51.32 65.04 108.72 8.03 29.64 34.74 47 E10_Aa NovelBoundary 0 31.19 19.21 3.16 7.36 11.29 10.22 21.73 2.18 18.63 9.21 2.21 6.00 6.33 0.00 10.75 8.03 0.00 0.00 0.00 8.56 0.00 3.12 4.35 48 ER10a ExonRegion 0 69.66 62.22 111.27 117.23 131.91 91.69 76.26 104.07 104.75 84.69 169.38 112.72 71.17 197.89 274.19 188.13 97.46 67.36 93.44 127.25 17.75 35.38 35.75 49 E10_Da KnownBoundary 0 127.43 120.64 126.81 167.71 88.96 95.40 121.23 113.57 130.47 87.70 135.46 162.20 111.19 205.07 309.04 160.64 73.59 67.53 105.13 135.44 11.80 45.99 22.96 50 ER10b ExonRegion 0 61.05 79.54 87.02 98.56 71.69 67.01 64.26 81.35 88.04 66.46 91.48 119.52 77.87 76.75 186.53 69.70 56.22 22.03 30.40 75.41 3.52 24.76 11.27 51 E10_Db KnownBoundary 1 16.74 22.56 30.66 38.52 8.23 0.00 23.63 22.88 36.46 27.40 7.11 67.52 13.64 12.01 17.80 4.36 4.02 2.49 8.47 19.24 0.00 0.00 0.00 52 ER10c ExonRegion 1 11.48 20.17 12.60 20.38 19.88 12.58 14.49 13.90 24.28 18.83 1.78 22.61 17.79 2.43 7.54 7.53 0.29 1.44 5.50 2.93 0.00 1.57 2.22 53 IG26 Intergenic 0 6.36 9.44 3.56 9.56 11.58 5.63 8.04 6.58 13.83 4.48 0.91 2.38 1.90 1.62 3.80 4.07 2.37 1.81 2.43 4.77 0.89 0.79 1.45 54 IG26_SR1 SilentIntergenicRegion 0 6.37 9.45 3.56 9.57 11.59 5.64 8.05 6.59 13.84 4.49 0.91 2.38 1.90 1.62 3.80 4.07 2.37 1.82 2.43 4.77 0.89 0.79 1.45