Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MPP5 Gene 0 23.60 35.86 18.38 38.46 43.09 28.44 39.47 27.20 35.07 46.76 48.37 86.73 66.86 52.53 37.52 53.91 47.15 16.08 23.63 39.10 27.83 45.05 30.23 2 261681 Transcript 0 15.37 22.93 7.80 19.13 29.47 21.37 31.49 14.41 17.37 31.66 57.30 99.17 90.34 71.17 30.52 75.79 65.74 17.96 20.35 32.39 44.17 44.53 36.29 3 ER1a ExonRegion 0 7.88 4.06 1.12 0.02 3.56 4.25 10.14 1.14 0.95 5.68 12.24 0.68 1.57 15.22 5.95 18.05 19.91 5.69 3.57 4.19 20.13 11.98 10.95 4 E1a_E2a KnownJunction 0 6.74 0.00 1.45 1.73 0.00 7.33 6.40 2.51 1.62 13.97 14.16 5.85 13.47 16.19 4.45 15.55 30.29 5.26 0.00 5.75 37.99 5.27 11.61 5 I1_AR5 ActiveIntronRegion 0 5.10 1.21 4.46 23.12 10.03 2.09 12.18 3.81 6.07 5.22 1.03 2.23 5.17 1.55 1.10 3.12 2.97 0.81 1.04 7.04 0.00 2.50 0.96 6 E2_Aa NovelBoundary 0 3.33 3.35 5.00 17.08 0.00 0.00 7.15 10.27 6.08 1.02 0.00 6.30 6.82 0.00 0.00 4.36 0.00 3.36 0.00 6.52 2.53 0.00 0.00 7 ER2a ExonRegion 0 5.48 3.21 1.30 7.83 7.58 10.94 12.46 5.64 5.19 21.21 39.92 39.96 25.71 44.61 19.61 41.57 65.30 11.58 7.22 25.56 48.40 31.18 13.73 8 E2_Da NovelBoundary 0 0.00 6.18 1.63 10.89 0.00 0.00 5.26 12.90 6.02 5.75 0.00 12.00 6.01 0.00 4.45 0.00 0.00 2.40 0.00 23.14 0.00 0.00 0.00 9 E2a_E3a KnownJunction 1 0.00 19.21 1.09 3.66 10.78 2.61 4.24 9.32 9.43 26.16 11.42 90.63 48.54 38.61 19.66 38.28 4.77 17.45 9.22 20.77 16.19 57.01 28.34 10 I2_AR4 ActiveIntronRegion 1 0.71 0.00 0.00 4.09 8.56 0.86 11.30 2.65 2.47 2.22 0.00 0.00 4.69 0.00 10.44 2.97 6.60 0.00 0.21 4.96 2.20 0.14 5.87 11 I2_AR5 ActiveIntronRegion 0 9.88 2.03 0.00 5.45 34.12 1.83 19.75 3.46 4.43 3.44 1.93 0.00 4.30 0.00 2.18 2.97 1.93 0.62 3.19 6.91 0.92 0.00 0.73 12 I2_SR2 SilentIntronRegion 0 12.17 2.03 0.00 5.45 36.79 5.50 15.72 3.24 3.71 2.58 1.93 0.00 4.69 0.00 0.00 2.97 3.30 1.85 3.19 9.31 3.03 0.00 0.00 13 I2_AR6 ActiveIntronRegion 0 11.17 1.24 0.00 5.07 37.46 3.97 14.20 1.73 2.54 2.29 1.93 0.00 4.69 0.00 2.42 2.81 3.30 1.85 1.59 9.57 4.41 0.00 0.00 14 I2_AR9 ActiveIntronRegion 0 2.88 6.36 0.00 20.83 3.99 0.00 9.49 1.40 0.48 2.82 0.00 0.00 5.93 0.68 1.60 3.05 2.36 0.96 3.14 8.45 0.57 1.08 3.15 15 E3_Aa NovelBoundary 0 7.33 3.16 4.29 17.38 4.33 0.00 10.20 6.33 5.41 6.39 0.00 0.00 7.95 0.00 4.45 0.00 0.00 0.00 0.00 3.13 0.00 0.00 0.00 16 ER3a ExonRegion 0 15.16 27.24 8.57 27.19 23.59 13.41 26.52 14.67 13.08 29.70 50.77 113.23 74.94 52.07 22.28 43.63 46.48 14.67 15.12 33.57 23.72 36.32 30.56 17 E3_Da NovelBoundary 0 3.78 2.96 1.80 35.13 15.62 0.00 14.71 10.06 7.75 7.90 4.47 6.00 0.00 0.00 4.45 0.00 0.00 1.87 4.14 17.90 2.72 0.00 4.35 18 E3a_E4a KnownJunction 1 0.00 31.84 4.17 22.04 22.33 17.72 40.36 11.38 17.68 36.29 28.11 101.73 122.88 55.80 29.17 56.57 37.49 1.91 3.67 38.80 11.00 53.27 23.22 19 I3 Intron 0 7.93 6.06 3.93 17.72 13.12 1.60 11.60 8.14 6.26 9.06 0.87 5.74 10.14 1.16 4.96 4.17 3.50 1.87 3.24 8.21 0.69 2.01 2.52 20 I3_AR1 ActiveIntronRegion 0 6.11 5.37 4.67 22.28 8.53 1.46 17.19 10.37 6.00 11.66 2.08 10.93 18.37 1.50 3.98 1.57 1.86 1.57 2.83 10.79 0.25 3.16 2.67 21 I3_SR1 SilentIntronRegion 0 5.01 3.95 4.11 17.49 14.52 1.31 11.69 6.61 5.26 6.94 1.02 4.20 9.68 1.70 4.02 2.12 3.26 0.50 1.64 6.94 0.07 2.60 2.59 22 I3_AR2 ActiveIntronRegion 0 5.26 8.54 3.70 21.50 11.90 0.94 13.42 8.70 9.93 10.26 0.18 9.24 10.87 0.71 3.79 3.20 3.06 0.51 4.24 9.81 0.20 2.32 2.79 23 I3_AR3 ActiveIntronRegion 0 2.12 11.69 2.45 24.70 5.02 0.00 4.30 12.10 5.09 8.60 0.00 5.41 4.69 6.29 2.90 2.97 0.00 0.00 9.56 17.02 0.00 3.13 0.00 24 I3_AR4 ActiveIntronRegion 1 3.94 9.60 5.37 25.27 15.89 1.32 16.68 10.61 5.66 12.07 0.00 25.80 4.88 2.47 6.09 0.59 2.84 0.00 3.76 11.70 0.00 2.08 0.65 25 I3_SR2 SilentIntronRegion 0 9.94 6.68 3.83 16.85 13.25 1.80 10.77 8.47 6.13 9.38 0.83 4.91 9.13 0.89 5.66 5.52 3.96 2.66 3.85 8.22 1.08 1.60 2.54 26 I3_AR5 ActiveIntronRegion 1 1.76 3.14 2.98 14.71 12.68 2.03 9.82 6.04 7.73 9.81 0.00 9.44 16.59 2.37 2.81 1.58 0.91 1.38 0.88 6.56 0.00 2.49 0.81 27 E4_Aa NovelBoundary 0 10.59 20.19 6.42 25.47 11.80 0.00 10.82 2.38 6.11 5.21 0.00 25.21 0.00 2.47 8.90 11.36 8.98 0.00 0.00 20.58 0.00 3.12 0.00 28 ER4a ExonRegion 0 11.45 33.61 7.20 20.36 24.47 10.91 29.64 18.15 27.71 35.19 69.70 142.54 117.81 57.72 33.50 69.54 79.57 13.10 18.08 45.15 33.59 50.42 37.00 29 E4_Da NovelBoundary 0 3.78 8.81 0.00 18.05 3.99 0.00 7.15 9.00 10.42 11.36 0.00 24.61 6.82 0.00 4.45 8.12 4.77 2.11 3.76 10.99 3.15 0.00 0.00 30 E4a_E5a KnownJunction 0 7.19 23.42 6.18 10.85 28.95 36.17 29.68 17.87 14.50 31.32 56.91 161.75 132.30 91.65 61.19 60.58 82.19 19.11 4.80 37.97 47.82 34.29 32.35 31 I4_SR1 SilentIntronRegion 0 3.40 4.55 4.01 19.22 7.43 1.98 12.82 7.64 8.31 10.50 1.07 8.66 9.45 1.46 5.36 4.31 3.60 1.76 6.02 13.51 1.66 3.30 3.15 32 E5_Aa NovelBoundary 0 6.67 3.03 2.99 20.31 3.74 0.00 20.05 2.55 1.42 1.67 2.68 31.51 13.80 2.47 6.30 17.09 4.77 0.00 0.00 6.20 8.90 6.25 0.00 33 ER5a ExonRegion 0 9.71 19.29 4.30 20.76 34.82 23.60 34.44 10.19 15.44 31.11 89.56 134.99 123.74 79.33 36.19 86.08 101.90 20.40 16.62 40.13 64.19 43.33 54.18 34 E5_Da NovelBoundary 0 0.00 0.00 0.00 18.51 4.33 0.00 8.44 10.88 4.89 2.85 0.00 24.01 6.82 0.00 4.45 0.00 0.00 0.00 0.00 14.57 7.54 5.14 0.00 35 E5a_E6a KnownJunction 0 13.93 15.19 8.34 20.34 46.01 9.99 31.31 6.45 14.06 24.26 71.86 171.96 162.00 88.29 27.20 124.33 85.74 12.73 26.35 34.52 50.16 45.07 50.62 36 ER6a ExonRegion 0 13.84 24.51 14.23 24.13 33.55 17.54 53.54 14.87 16.18 35.83 66.92 166.58 140.06 93.06 41.47 88.46 78.17 18.41 22.80 35.75 62.62 45.71 58.83 37 E6_Da NovelBoundary 0 20.45 18.81 5.26 19.15 17.91 2.44 25.48 11.21 8.77 6.10 0.00 19.96 25.97 2.47 9.52 0.00 4.21 6.47 3.86 7.93 6.30 3.12 7.43 38 E6a_E7a KnownJunction 0 10.22 29.80 12.15 19.88 20.54 52.19 44.60 24.52 16.78 32.64 63.44 87.78 80.35 96.65 55.50 80.75 80.50 21.85 15.62 23.52 62.77 55.84 57.62 39 I6 Intron 0 3.05 5.87 0.44 10.26 5.79 1.32 16.56 3.72 5.75 4.93 1.39 10.66 10.42 1.24 3.45 0.71 2.38 0.66 2.30 7.68 1.06 3.51 1.41 40 I6_SR1 SilentIntronRegion 0 3.10 5.95 0.45 10.41 5.88 1.34 16.80 3.77 5.83 5.00 1.41 10.81 10.57 1.26 3.50 0.73 2.42 0.67 2.33 7.79 1.08 3.56 1.43 41 E7_Aa NovelBoundary 0 0.00 15.72 0.00 8.59 8.23 4.88 21.51 6.61 2.84 4.97 0.00 6.30 26.46 2.41 8.90 4.36 8.70 2.11 0.00 5.24 0.00 0.00 0.00 42 ER7a ExonRegion 0 20.02 26.00 11.66 30.07 28.49 23.30 46.54 21.86 20.97 37.29 71.60 102.52 114.91 84.03 37.97 95.18 93.61 20.84 37.97 36.98 54.75 44.60 45.57 43 E7_Da NovelBoundary 0 3.48 5.72 0.00 20.08 19.19 2.78 21.68 21.11 15.77 5.69 7.11 13.80 34.25 2.12 0.00 20.51 9.26 6.09 36.33 30.36 8.90 5.57 7.77 44 E7a_E8a KnownJunction 0 14.52 14.60 3.08 20.68 12.82 30.15 30.47 20.29 12.18 21.33 81.44 99.93 100.64 60.10 58.97 100.83 82.37 14.63 32.19 37.33 58.19 45.74 23.05 45 I7_SR1 SilentIntronRegion 0 3.12 4.16 3.12 13.72 6.34 2.33 16.89 4.40 5.99 6.67 1.32 14.59 13.31 0.42 4.86 9.73 7.00 1.26 2.61 13.34 3.00 1.42 0.98 46 E8_Aa NovelBoundary 0 16.60 5.99 0.00 24.81 0.00 0.00 42.44 6.78 3.01 5.48 4.84 19.06 0.00 2.41 4.82 4.10 4.02 2.11 3.95 5.94 0.00 2.51 4.35 47 ER8a ExonRegion 0 13.57 18.90 7.13 17.18 23.22 9.73 31.69 12.17 12.46 23.54 68.99 96.80 101.26 89.08 40.58 96.48 76.17 23.10 33.73 39.63 46.67 30.13 43.64 48 E8_Da NovelBoundary 1 13.04 3.35 4.70 17.41 15.53 0.00 24.73 1.89 7.84 4.81 2.63 13.95 38.47 0.00 0.00 3.33 0.00 3.81 0.00 19.43 5.00 0.00 3.16 49 E8a_E9a KnownJunction 1 0.00 13.75 12.60 13.22 24.45 20.90 27.34 15.24 18.66 21.46 40.80 67.97 166.06 66.04 30.53 81.18 79.29 32.62 39.15 24.48 48.25 28.96 54.63 50 I8 Intron 0 5.62 3.96 3.30 20.41 9.50 1.73 14.12 8.93 7.35 9.08 1.29 7.82 9.97 2.01 4.20 5.65 4.13 2.29 6.15 10.63 0.93 2.09 2.83 51 I8_SR3 SilentIntronRegion 0 4.78 3.03 3.94 20.61 9.53 1.60 13.29 5.33 7.18 5.76 0.53 5.69 7.91 1.68 3.79 6.81 3.48 2.31 3.69 10.93 1.11 2.22 2.15 52 I8_AR3 ActiveIntronRegion 0 6.95 3.29 5.46 23.24 14.16 2.95 17.34 7.85 5.52 11.34 0.54 9.73 12.29 1.12 4.75 8.79 3.70 4.35 9.59 14.08 0.00 4.40 5.21 53 I8_AR4 ActiveIntronRegion 0 7.88 4.35 5.97 30.66 9.60 0.41 17.07 17.14 6.71 12.33 2.04 9.87 18.56 2.13 4.58 5.83 5.67 3.84 7.84 16.56 0.33 2.59 6.03 54 I8_AR5 ActiveIntronRegion 0 2.53 9.96 6.74 23.63 15.36 4.50 15.10 11.24 9.77 12.84 2.31 8.55 20.89 1.80 7.34 4.37 9.15 3.60 17.45 15.02 2.11 0.00 4.02 55 I8_SR4 SilentIntronRegion 0 1.19 2.58 2.62 25.62 8.52 2.11 15.62 14.59 13.46 14.60 0.43 11.16 25.61 1.29 3.93 4.17 4.93 5.26 7.25 12.18 0.71 0.60 3.30 56 I8_AR6 ActiveIntronRegion 0 7.06 3.91 3.29 31.27 12.14 3.21 15.45 16.18 11.75 15.44 1.16 10.61 14.65 2.84 3.82 5.04 6.06 1.11 9.24 10.46 0.48 1.00 3.91 57 I8_SR5 SilentIntronRegion 0 6.38 4.51 3.00 18.52 9.52 1.52 14.39 9.07 7.21 9.10 1.30 7.90 8.37 2.11 4.25 4.96 3.79 1.83 5.52 9.84 0.82 2.19 2.54 58 I8_AR7 ActiveIntronRegion 0 6.83 4.70 1.27 31.54 8.22 3.19 21.80 9.30 7.52 12.35 5.56 17.76 9.93 3.97 7.53 13.44 7.63 8.57 21.33 18.65 4.32 3.69 2.48 59 ER9a ExonRegion 1 15.11 16.63 10.19 12.95 20.16 22.72 29.36 16.02 13.73 22.86 58.87 94.00 111.85 84.16 25.48 88.65 70.97 25.44 34.81 31.20 59.86 36.46 38.99 60 E9a_E10a KnownJunction 0 27.12 24.47 10.38 21.64 34.55 21.52 26.45 19.67 20.28 29.47 70.97 76.98 118.01 89.94 29.17 54.60 44.69 25.49 49.22 35.28 71.11 56.82 38.24 61 ER10a ExonRegion 1 22.90 23.89 8.03 13.63 32.89 25.90 33.50 15.70 23.21 31.89 60.19 99.04 120.38 65.57 19.42 84.83 72.99 25.30 22.34 40.90 54.42 37.68 27.04 62 E10a_E11a KnownJunction 1 25.56 5.00 7.98 13.05 37.78 6.93 40.67 22.14 20.08 34.41 51.96 161.75 137.65 88.70 4.45 87.58 47.59 29.93 4.80 34.90 46.39 24.00 31.93 63 ER11a ExonRegion 1 18.93 18.58 6.62 19.21 45.26 42.30 34.31 16.25 20.40 30.60 80.94 135.18 125.46 112.43 31.95 113.11 71.70 28.67 25.70 39.80 54.21 78.97 50.94 64 E11a_E12a KnownJunction 1 42.08 18.62 5.80 31.93 48.22 34.36 38.47 9.90 24.59 31.24 112.13 155.15 89.28 121.37 20.15 129.97 100.42 29.18 35.11 31.38 56.65 104.65 47.80 65 E12_Aa NovelBoundary 0 3.78 0.00 0.00 3.30 0.00 4.20 22.52 3.04 0.00 3.28 0.00 18.16 0.00 0.00 13.35 0.00 0.00 4.44 9.60 2.94 0.00 0.00 0.00 66 ER12a ExonRegion 0 24.78 33.09 7.22 18.46 29.97 21.84 31.20 9.73 19.14 38.00 82.16 108.44 97.23 77.32 27.91 88.95 100.36 21.56 24.02 39.73 56.72 47.86 31.06 67 E12a_E13a KnownJunction 0 32.82 55.32 4.67 16.81 44.74 24.87 52.47 6.78 13.57 30.70 76.28 108.64 87.33 95.18 32.39 103.82 105.84 15.34 12.80 30.23 49.61 51.07 49.08 68 E13_Aa NovelBoundary 0 3.48 22.96 1.83 7.56 14.35 0.00 1.85 7.64 1.53 7.04 0.00 24.46 13.15 5.47 0.00 4.36 13.65 1.99 4.42 3.26 0.00 3.12 0.00 69 ER13a ExonRegion 0 13.52 27.96 7.65 29.49 43.14 23.76 28.46 16.84 25.80 44.13 53.45 95.50 55.24 67.12 39.15 91.40 64.54 18.94 18.09 37.79 55.64 49.01 34.88 70 E13_Da NovelBoundary 0 3.33 16.64 3.08 20.78 28.95 0.00 12.76 13.35 6.68 7.84 7.48 6.30 20.62 4.71 5.19 12.05 15.90 9.74 13.18 6.39 0.00 5.82 7.77 71 E13a_E14a KnownJunction 0 10.45 16.71 7.66 22.41 34.80 19.14 37.89 9.41 25.32 47.76 38.33 55.97 21.26 63.51 23.61 60.84 35.34 9.33 20.42 27.55 19.15 60.25 46.61 72 E14_Aa NovelBoundary 0 33.04 5.85 1.83 14.12 8.06 8.01 25.17 12.12 5.35 21.19 9.48 0.00 28.73 0.00 0.00 0.00 8.23 6.05 0.00 6.20 2.72 2.88 4.35 73 ER14a ExonRegion 0 29.10 49.10 10.13 27.21 44.02 20.90 35.01 14.50 21.02 46.72 56.37 67.05 61.22 60.22 32.10 85.98 65.30 12.82 26.40 31.49 36.95 48.32 26.11 74 E14_Da NovelBoundary 0 6.89 11.64 1.66 21.48 24.53 5.34 17.09 18.85 9.00 12.41 6.84 25.06 0.00 4.94 4.45 3.93 18.05 2.45 4.42 11.76 2.66 5.63 12.29 75 E14a_E15a KnownJunction 0 3.78 26.18 8.81 15.68 38.12 27.71 19.21 17.00 10.27 44.24 40.59 56.42 15.10 66.22 30.16 69.04 49.93 10.28 4.05 31.26 17.05 28.29 26.63 76 I14 Intron 0 14.88 11.18 8.31 20.84 22.31 8.09 14.84 18.31 17.86 14.41 2.79 14.24 17.30 3.40 8.06 11.35 6.72 7.21 12.56 10.93 2.98 7.02 7.38 77 I14_SR1 SilentIntronRegion 0 11.28 8.24 6.34 15.70 16.20 3.54 10.93 15.54 10.10 11.53 1.12 7.23 12.83 2.39 6.90 8.92 4.62 5.28 6.76 6.07 1.70 3.42 5.03 78 I14_AR1 ActiveIntronRegion 0 21.41 16.50 11.87 30.18 33.39 16.31 21.94 23.36 31.93 19.64 5.82 26.95 25.40 5.23 10.18 15.76 10.52 10.71 23.07 19.75 5.29 13.53 11.66 79 E15_Aa NovelBoundary 1 13.63 19.08 9.58 31.20 44.82 20.10 15.81 39.80 35.85 26.06 5.00 24.76 47.40 9.54 11.50 19.23 24.68 22.59 29.08 17.96 13.96 10.78 11.69 80 ER15a ExonRegion 0 29.89 44.78 26.46 52.23 55.89 36.97 46.83 37.56 49.42 59.15 41.54 77.01 53.52 43.76 44.94 42.01 33.06 15.32 26.18 43.63 16.65 48.83 27.30 81 IG11 Intergenic 0 13.02 18.70 8.25 18.42 17.13 13.01 21.98 14.23 21.84 22.48 8.55 30.32 23.77 8.35 9.51 11.47 7.46 7.74 11.40 21.70 4.29 16.68 9.77 82 IG11_AR1 ActiveIntergenicRegion 0 8.46 13.99 7.39 17.26 17.87 13.46 21.37 11.73 20.58 19.98 5.77 27.56 19.90 5.38 5.41 10.98 6.01 8.24 7.74 16.36 3.46 12.65 9.21 83 IG11_SR1 SilentIntergenicRegion 0 6.44 1.55 0.00 0.00 6.11 0.00 4.03 0.00 0.00 0.00 0.00 5.43 0.00 3.05 3.12 6.79 2.51 1.41 7.27 16.20 1.68 9.52 2.24 84 IG11_AR2 ActiveIntergenicRegion 0 22.25 29.52 10.88 22.87 17.18 13.82 25.38 20.62 26.89 29.90 14.75 38.56 33.89 14.50 17.85 13.00 10.75 7.62 18.68 32.28 6.14 25.03 11.75