Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 IRF9 Gene 0 508.23 31.04 87.91 64.75 265.86 138.14 48.35 262.22 186.04 94.56 323.79 209.97 131.96 559.52 606.38 724.33 330.38 54.89 45.79 34.36 147.46 129.50 119.62 2 396864 Transcript 0 605.22 26.23 84.60 67.00 288.57 161.41 54.90 280.26 193.46 81.97 322.63 152.64 134.66 630.15 750.98 1054.48 331.77 51.63 37.84 32.15 144.16 160.40 189.26 3 324076 Transcript 0 17.63 6.18 4.23 1.83 11.97 2.90 4.06 9.41 3.01 3.33 4.58 0.00 0.00 5.00 16.81 11.54 17.02 2.40 0.00 0.00 5.62 2.39 0.00 4 IG16 Intergenic 0 6.90 10.61 25.24 17.75 9.77 10.05 15.71 11.76 9.60 29.88 12.60 6.51 2.45 26.52 19.08 24.42 18.09 46.13 34.88 23.59 12.65 2.17 9.19 5 IG16_AR1 ActiveIntergenicRegion 0 6.94 10.66 25.37 17.84 9.82 10.10 15.80 11.82 9.65 30.03 12.66 6.54 2.46 26.65 19.17 24.55 18.18 46.37 35.06 23.72 12.71 2.19 9.24 6 ER1a ExonRegion 1 202.28 11.30 42.14 18.99 119.61 74.17 30.59 45.97 26.32 28.12 83.34 3.06 6.87 128.30 163.54 229.69 83.69 50.04 34.18 28.95 40.05 41.42 65.62 7 E1a_E2a KnownJunction 1 2004.50 35.85 81.75 93.83 903.82 552.07 143.93 357.92 232.06 80.02 551.40 22.36 5.68 983.88 1199.58 1962.73 602.06 26.61 32.75 30.17 261.44 273.29 360.15 8 I1 Intron 0 10.41 10.55 8.01 14.18 5.16 2.19 6.16 8.56 5.26 13.18 17.35 20.00 8.64 16.03 20.83 26.68 19.31 12.77 13.56 5.23 8.34 2.63 4.69 9 I1_SR1 SilentIntronRegion 0 10.50 10.60 8.08 14.28 5.20 2.21 6.20 8.63 5.30 13.28 17.49 20.15 8.71 16.15 20.98 26.89 19.47 12.85 13.65 5.27 8.41 2.65 4.71 10 E2_Aa NovelBoundary 0 23.93 18.88 22.59 32.40 3.90 11.58 19.30 12.57 6.48 37.85 8.05 37.06 32.47 4.89 36.10 17.43 17.67 23.38 26.26 9.01 5.68 0.00 12.04 11 ER2a ExonRegion 0 249.22 29.48 93.74 65.09 167.17 89.13 42.79 292.44 201.16 97.09 376.40 153.33 125.85 485.14 556.67 853.99 404.79 59.85 41.50 36.23 187.33 152.43 146.31 12 E2a_E3a KnownJunction 1 111.20 21.97 113.80 102.25 192.44 60.76 30.47 462.66 287.09 92.51 271.28 207.97 240.89 943.97 1400.46 1912.15 320.52 64.38 31.44 50.37 139.74 237.40 345.46 13 E3_Ab NovelBoundary 0 213.82 24.54 114.25 69.02 276.66 184.10 39.83 363.92 266.00 94.55 330.14 213.22 130.84 787.22 949.26 1403.91 364.56 64.96 59.86 34.96 136.96 154.12 171.92 14 ER3a ExonRegion 1 137.71 19.94 104.00 72.58 195.50 99.14 29.30 365.26 269.57 88.76 309.82 209.91 174.89 854.71 991.48 1534.48 325.09 66.58 51.27 46.74 132.01 181.27 229.25 15 ER3b ExonRegion 0 317.27 16.15 109.70 57.80 358.74 249.64 71.10 301.52 248.10 118.17 418.01 326.52 168.44 632.95 587.04 737.69 437.83 63.83 41.20 42.79 221.41 142.21 117.85 16 E3a_E4a KnownJunction 0 1239.78 26.77 153.48 80.68 171.31 198.07 36.57 409.84 293.98 122.62 392.26 408.43 328.06 762.20 805.99 842.17 508.74 72.71 44.33 56.69 211.71 140.65 130.61 17 ER4a ExonRegion 0 669.34 35.08 108.55 60.79 138.81 143.54 34.89 331.28 240.72 115.53 442.97 357.69 208.47 845.42 783.76 909.54 490.88 67.48 52.23 45.54 247.59 175.13 156.40 18 E4_Da NovelBoundary 1 55.27 0.00 19.16 16.28 28.78 17.15 9.72 55.24 29.08 28.77 30.90 30.46 59.57 79.88 69.35 66.39 60.68 16.42 15.81 15.60 18.90 8.57 28.77 19 E4a_E5a KnownJunction 1 430.89 22.23 81.01 49.08 142.95 115.27 29.24 295.03 206.88 112.42 230.90 257.33 69.31 716.23 643.68 597.62 354.84 40.04 19.67 27.16 173.90 82.05 126.17 20 E4a_E6a NovelJunction 0 6.45 0.00 0.00 0.00 0.00 0.00 2.21 1.60 3.82 0.00 4.58 17.26 0.00 0.00 0.00 12.65 4.68 0.00 0.00 0.00 5.44 2.82 0.00 21 E5_Aa NovelBoundary 0 238.78 5.72 5.06 9.46 79.97 41.62 20.31 44.73 30.70 18.64 34.17 56.57 21.75 78.58 88.26 107.49 77.23 9.91 8.47 8.25 22.55 14.27 11.44 22 ER5a ExonRegion 0 414.89 29.46 96.91 58.07 164.95 107.61 30.34 287.43 210.20 107.18 328.33 192.40 124.17 656.64 639.83 730.42 390.15 51.74 39.58 39.02 169.20 114.80 90.28 23 E5a_E6a KnownJunction 0 387.11 22.04 115.08 71.62 211.38 133.16 31.62 344.32 256.13 118.78 340.82 210.52 216.06 579.26 579.89 678.03 337.63 58.12 35.39 29.15 192.50 134.65 113.62 24 ER6a ExonRegion 0 379.15 25.48 68.76 65.65 179.76 122.99 39.88 253.36 194.50 102.87 363.98 286.35 136.34 686.24 650.28 893.17 361.91 58.36 53.05 33.10 229.83 146.74 157.93 25 E6_Da NovelBoundary 0 235.15 9.47 79.24 36.83 171.14 46.68 15.77 228.04 129.57 70.83 155.67 98.73 101.29 357.76 326.97 490.13 158.95 50.45 44.80 32.02 49.36 62.64 61.03 26 E6a_E7a KnownJunction 0 277.60 18.94 51.24 52.44 176.66 125.50 41.78 211.33 129.63 80.34 254.80 146.15 215.25 601.57 487.42 610.35 207.39 37.64 39.53 15.21 145.42 167.17 150.41 27 E6a_E8a KnownJunction 0 17.63 6.18 4.23 1.83 11.97 2.90 4.06 9.41 3.01 3.33 4.58 0.00 0.00 5.00 16.81 11.54 17.02 2.40 0.00 0.00 5.62 2.39 0.00 28 I6 Intron 0 309.86 10.83 36.16 31.14 147.00 95.09 24.67 173.60 94.66 58.78 176.37 132.57 109.92 284.03 236.50 407.90 176.44 38.93 32.90 19.71 59.35 54.57 67.54 29 I6_AR1 ActiveIntronRegion 0 311.13 10.87 36.31 31.26 147.61 95.48 24.77 174.32 95.05 59.02 177.11 133.12 110.37 285.21 237.45 409.61 177.16 39.09 33.04 19.79 59.59 54.80 67.82 30 E7_Aa NovelBoundary 0 333.84 17.56 70.07 32.26 110.95 64.68 38.95 173.21 79.98 61.76 141.72 68.57 59.74 329.80 278.63 381.18 114.63 32.54 4.33 17.39 34.84 39.19 59.41 31 ER7a ExonRegion 0 445.34 26.32 99.45 68.10 143.97 134.75 38.31 265.30 198.08 110.94 333.99 146.06 99.18 662.55 673.41 700.06 360.16 68.14 41.97 30.77 155.83 120.44 112.49 32 E7_Da NovelBoundary 0 189.37 23.68 61.23 46.45 65.70 44.01 12.81 188.08 98.18 77.47 59.28 50.12 12.99 93.88 83.94 118.77 102.29 39.71 0.00 23.27 32.56 17.57 15.45 33 E7a_E8a KnownJunction 0 1257.26 30.32 93.43 36.19 225.89 187.11 72.43 225.78 207.03 70.00 391.47 150.05 116.39 481.55 656.53 859.35 356.33 55.84 9.04 25.31 132.94 112.24 172.86 34 I7 Intron 0 226.67 11.88 52.47 38.48 85.31 45.55 20.92 139.03 68.48 47.64 79.22 55.31 33.81 150.12 129.81 218.27 108.83 36.07 38.29 23.02 24.09 26.00 31.60 35 I7_AR1 ActiveIntronRegion 1 192.87 12.03 56.68 39.84 83.13 45.55 19.42 144.52 71.97 49.76 82.44 47.77 34.13 156.15 134.37 215.16 111.86 38.34 38.11 24.19 25.48 26.60 31.22 36 I7_SR1 SilentIntronRegion 1 504.79 19.60 54.05 51.42 118.22 50.96 33.00 166.22 73.00 61.93 99.05 100.56 36.03 154.76 139.48 374.08 144.89 42.55 70.27 25.02 22.64 39.71 62.20 37 I7_AR2 ActiveIntronRegion 1 364.89 8.13 33.82 33.12 89.37 36.49 39.72 123.76 59.53 41.40 62.82 112.57 33.30 122.13 116.34 210.13 101.67 31.41 35.68 15.53 13.88 14.38 27.90 38 I7_AR3 ActiveIntronRegion 0 419.07 6.63 25.42 26.15 103.26 60.24 34.62 112.29 52.84 27.36 60.35 96.85 37.52 125.12 109.39 176.90 92.79 20.87 25.95 14.74 21.63 14.66 17.62 39 I7_AR4 ActiveIntronRegion 1 227.26 3.30 8.19 9.99 65.28 33.31 15.94 42.67 22.93 10.97 20.78 72.97 25.01 78.74 66.91 87.18 29.09 4.04 6.70 9.66 9.32 8.12 6.00 40 E8_Aa NovelBoundary 0 824.89 12.17 52.63 41.55 172.67 85.63 25.53 168.24 89.50 81.36 61.33 49.67 72.72 160.99 109.90 304.96 111.17 38.76 33.79 24.03 22.24 20.94 40.21 41 ER8a ExonRegion 0 1343.15 60.22 101.57 66.31 441.84 210.05 69.75 312.48 229.66 102.02 387.21 187.03 93.92 622.86 798.19 804.29 315.86 42.91 38.69 33.93 157.32 125.98 133.29 42 E8_Da NovelBoundary 0 306.13 0.00 11.00 8.26 56.20 21.07 15.41 49.41 22.95 16.33 24.80 12.30 6.33 24.37 70.34 61.01 61.15 10.69 0.00 15.28 30.52 3.06 21.17 43 E8a_E9a KnownJunction 0 1509.01 96.23 123.56 80.51 648.13 220.95 62.49 395.30 264.58 127.57 405.94 273.24 152.26 642.77 885.84 885.24 368.21 66.53 67.20 29.66 182.12 123.02 112.00 44 I8 Intron 0 112.69 1.30 4.69 7.82 30.90 20.00 8.49 20.65 8.27 8.77 21.70 19.36 12.39 26.05 50.74 52.43 36.00 5.60 4.09 1.36 18.36 10.02 23.55 45 I8_SR1 SilentIntronRegion 0 115.41 1.34 4.81 8.02 31.69 20.51 8.71 21.18 8.46 8.99 22.25 19.86 12.71 26.70 52.05 53.77 36.93 5.75 4.19 1.40 18.84 10.28 24.12 46 E9_Aa NovelBoundary 0 134.10 3.16 16.20 6.56 133.62 14.82 14.09 55.61 21.30 12.52 36.11 19.36 7.95 42.15 80.23 122.36 49.09 14.67 0.00 11.57 25.58 31.35 35.34 47 ER9a ExonRegion 0 596.55 60.87 113.71 100.55 554.63 233.25 72.33 440.81 288.17 151.20 450.25 308.23 165.93 845.27 1037.52 896.86 385.15 60.49 59.56 54.12 177.67 180.84 146.49 48 E9_Da KnownBoundary 0 338.13 48.68 141.63 144.37 865.96 255.71 107.80 504.31 374.74 183.71 490.91 233.48 155.02 983.52 1059.03 897.54 437.21 52.36 45.93 74.27 173.66 236.79 169.19 49 ER9b ExonRegion 0 761.88 41.90 81.87 93.57 472.04 130.02 64.54 295.73 190.19 89.95 331.14 334.85 226.96 529.74 629.70 827.51 325.87 35.56 58.92 25.62 102.67 157.97 120.82 50 IG17 Intergenic 0 46.96 3.05 11.36 3.74 29.45 2.91 5.26 15.36 12.83 4.88 11.08 34.07 17.37 7.82 23.63 43.08 25.11 5.77 5.78 3.37 10.03 10.63 23.95 51 IG17_AR1 ActiveIntergenicRegion 0 30.80 2.09 11.35 3.25 21.26 5.13 6.21 15.14 14.98 6.25 12.07 31.54 11.39 9.21 28.55 45.37 32.38 6.78 7.29 4.15 13.28 12.79 24.51 52 IG17_SR1 SilentIntergenicRegion 0 77.16 3.47 8.64 4.04 33.21 2.55 5.33 26.83 21.92 8.95 21.22 38.95 14.01 11.06 41.26 81.46 36.94 6.96 6.71 5.68 12.29 11.97 35.51 53 IG17_AR2 ActiveIntergenicRegion 0 84.12 4.55 20.81 6.52 50.61 2.77 9.16 20.88 19.03 6.40 18.55 64.84 42.98 9.88 32.80 63.18 36.41 9.20 7.91 4.54 15.10 16.11 37.71 54 IG17_SR2 SilentIntergenicRegion 0 27.14 2.61 7.02 2.31 29.35 2.87 3.39 9.54 4.98 1.46 3.03 18.50 9.04 6.18 10.79 16.09 9.40 1.05 4.99 1.52 3.77 6.83 11.30 55 IG17_AR5 ActiveIntergenicRegion 0 14.26 2.59 5.32 1.85 7.31 0.67 0.48 5.63 3.35 1.87 0.35 7.33 0.70 2.63 5.32 12.99 9.02 4.18 1.16 1.16 4.42 3.79 9.63