Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 STRN3 Gene 0 73.61 130.22 52.96 114.32 105.24 52.74 105.39 66.55 75.73 62.83 65.54 113.75 76.16 67.14 58.75 58.20 71.41 48.09 37.40 80.03 46.49 122.12 77.12 2 357479 Transcript 0 3.75 10.80 2.93 14.12 13.90 2.55 21.91 5.74 9.80 11.55 18.02 29.47 13.15 10.19 6.60 21.65 20.01 30.82 12.97 44.42 9.67 13.11 11.14 3 355683 Transcript 1 26.82 19.21 5.56 37.79 8.15 29.93 26.28 13.84 24.83 31.08 58.23 70.82 19.32 71.46 13.35 37.85 50.58 30.26 35.77 30.81 79.88 66.62 83.06 4 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 2.51 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 2.64 0.91 1.86 1.65 0.00 3.19 4.12 6.34 0.00 4.40 5 ER1b ExonRegion 0 2.02 2.66 3.81 6.56 4.69 5.56 7.43 4.49 11.21 11.50 18.82 2.44 4.54 30.28 11.29 18.17 31.22 28.51 13.44 22.71 41.98 11.34 32.27 6 E1_Da NovelBoundary 0 5.93 0.00 0.00 3.90 0.00 0.00 2.25 0.00 4.75 1.21 0.00 0.00 0.00 0.00 0.00 11.79 8.13 12.64 13.93 2.56 3.15 0.00 19.97 7 E1a_E2a KnownJunction 0 3.56 14.67 9.22 36.66 19.52 8.97 32.02 25.92 34.72 37.93 38.54 14.70 40.74 82.29 44.50 70.92 61.24 88.75 28.24 53.69 86.36 61.17 99.36 8 I1 Intron 1 15.31 10.08 7.75 15.07 12.09 2.52 23.40 11.94 11.99 8.24 2.39 16.56 22.57 1.72 12.37 16.87 14.30 5.84 6.23 20.32 2.70 1.16 13.50 9 I1_SR1 SilentIntronRegion 0 5.88 6.11 4.57 9.88 8.16 2.35 19.79 9.64 10.51 6.60 3.07 19.51 22.81 1.56 7.43 12.74 12.24 3.54 4.84 19.95 2.54 0.75 11.04 10 I1_AR2 ActiveIntronRegion 1 13.14 19.87 8.80 15.33 16.18 1.92 28.66 6.46 10.18 9.34 0.80 30.55 35.30 0.45 14.22 12.58 7.82 1.48 3.26 13.23 1.01 2.20 8.75 11 I1_SR2 SilentIntronRegion 1 23.06 8.90 9.64 20.01 17.21 3.56 31.72 15.65 16.83 11.11 2.39 17.32 27.42 2.49 19.07 22.84 19.39 4.87 8.76 24.52 2.81 2.00 18.79 12 I1_AR3 ActiveIntronRegion 1 55.70 37.38 12.80 24.42 22.85 3.55 40.06 13.85 18.95 15.57 2.87 12.96 30.68 0.72 15.20 14.24 15.36 4.34 6.70 21.24 3.51 1.41 7.07 13 I1_AR4 ActiveIntronRegion 1 65.08 25.04 11.49 30.15 13.38 0.00 33.84 10.59 17.68 10.54 0.24 6.49 14.07 1.52 22.67 26.93 9.90 10.16 12.74 17.95 9.23 1.82 17.62 14 I1_SR3 SilentIntronRegion 1 14.56 8.72 10.40 17.41 10.61 1.71 15.95 13.74 8.50 6.23 1.38 7.53 11.81 1.87 13.87 20.65 14.79 12.89 6.97 18.59 3.02 0.74 15.97 15 I1_SR1 SilentIntronRegion 1 13.09 9.57 6.74 12.42 12.03 2.03 19.78 11.18 10.82 9.40 1.13 9.73 13.76 1.50 12.06 13.33 7.95 4.46 4.99 11.66 2.08 1.05 10.06 16 I1_AR1 ActiveIntronRegion 1 9.15 6.98 5.17 19.70 18.34 1.98 29.71 14.21 14.50 19.91 2.83 24.06 40.36 3.42 11.33 12.39 13.55 3.75 6.41 20.18 4.92 1.89 9.82 17 I1_AR2 ActiveIntronRegion 1 11.07 8.13 7.76 22.26 18.92 0.48 28.38 17.80 20.93 12.41 1.76 25.67 35.96 2.28 7.18 18.15 5.56 0.94 3.35 23.96 3.29 1.24 9.53 18 I1_AR3 ActiveIntronRegion 0 7.17 6.39 9.20 20.36 15.51 4.10 23.52 21.14 26.88 16.03 3.73 17.47 15.88 1.38 9.54 9.99 9.01 1.91 3.38 21.72 1.53 5.25 5.07 19 I1_AR4 ActiveIntronRegion 0 8.09 4.09 3.97 9.20 14.94 1.18 17.73 11.01 8.52 8.00 0.00 13.26 13.77 1.60 5.58 15.31 7.48 0.23 3.19 10.80 0.00 0.47 5.69 20 I1_SR2 SilentIntronRegion 1 19.44 11.72 4.28 10.81 16.86 2.15 22.77 13.34 9.62 9.02 0.76 7.32 15.36 1.06 12.00 12.05 7.26 4.10 4.05 8.21 1.29 1.63 7.32 21 I1_AR10 ActiveIntronRegion 1 11.19 5.31 12.37 13.26 15.03 1.92 22.77 23.39 23.91 12.91 1.18 15.56 28.56 2.41 15.87 11.54 21.76 1.97 7.31 16.71 4.13 1.28 10.07 22 I1_AR11 ActiveIntronRegion 0 7.54 13.03 5.65 12.66 9.18 0.80 13.50 16.46 10.54 12.25 0.00 8.17 11.43 1.20 8.01 7.59 4.90 2.58 1.75 9.46 1.45 3.54 5.17 23 I1_SR4 SilentIntronRegion 0 23.44 8.26 5.95 10.42 26.98 1.75 19.25 12.80 9.90 8.54 0.49 7.79 12.75 1.26 9.92 13.19 8.59 4.48 4.91 10.13 2.09 1.07 10.22 24 I1_AR12 ActiveIntronRegion 0 11.27 3.63 9.14 15.40 6.97 2.97 18.54 15.34 18.06 11.17 0.31 14.13 15.70 2.62 9.43 14.98 15.70 10.35 16.17 20.73 7.82 3.43 19.23 25 ER2a ExonRegion 0 20.92 19.71 28.78 57.46 44.90 30.10 66.58 54.75 67.10 47.93 74.23 88.34 82.80 109.66 48.37 101.57 88.68 100.04 52.37 120.13 114.11 87.73 122.46 26 E2a_E3a KnownJunction 0 21.41 15.66 26.11 46.98 124.62 65.93 160.58 51.10 78.30 48.73 110.50 161.15 59.09 113.84 70.09 99.55 119.68 76.40 26.73 91.47 143.26 141.63 123.78 27 ER3a ExonRegion 1 26.51 41.80 23.93 65.22 90.29 75.78 98.89 57.93 81.05 44.33 90.35 108.24 121.69 112.33 39.13 84.83 112.72 91.36 24.97 102.76 99.76 103.02 117.27 28 E3a_E4a KnownJunction 1 36.97 36.57 28.53 92.13 61.55 49.97 61.87 72.78 73.81 51.33 82.65 115.99 255.99 98.18 21.88 102.71 116.13 99.70 43.01 107.19 73.52 79.05 96.37 29 ER4a ExonRegion 0 13.76 29.88 27.36 68.71 45.36 31.82 68.85 54.76 80.01 44.37 84.91 213.25 148.31 110.82 64.85 83.22 121.61 76.37 37.10 138.06 111.80 106.74 122.44 30 E4a_E5a KnownJunction 1 24.60 36.31 37.46 75.41 76.74 17.60 72.34 42.68 86.89 47.49 109.13 128.44 126.78 60.80 51.18 58.02 168.40 53.97 34.64 158.96 73.02 152.59 112.08 31 ER5a ExonRegion 0 25.46 44.86 43.85 78.41 79.50 50.59 115.70 53.23 87.88 60.51 88.41 247.73 176.06 104.79 55.24 87.27 129.93 54.57 37.78 129.85 53.45 124.01 123.36 32 E5a_E6a KnownJunction 0 30.67 63.21 72.32 90.76 83.79 70.36 105.81 68.55 87.59 73.41 84.81 252.68 179.86 101.07 49.94 68.19 116.88 37.35 57.32 110.00 45.10 162.94 131.20 33 ER6a ExonRegion 0 23.30 69.81 60.69 100.20 58.87 51.33 104.08 65.47 94.16 71.38 89.86 238.82 165.88 100.85 41.33 76.04 129.70 57.01 61.89 108.53 56.13 129.69 133.32 34 E6a_E7a KnownJunction 1 31.12 51.18 23.33 86.10 61.88 48.49 102.94 56.93 115.54 63.69 113.19 283.59 73.53 82.05 17.80 98.78 158.58 67.57 55.81 126.62 87.29 166.68 88.52 35 ER7a ExonRegion 0 22.55 52.46 27.61 79.03 47.56 61.29 84.12 46.64 64.47 68.63 97.20 158.12 96.91 86.88 40.49 85.58 111.18 84.02 65.26 101.96 80.06 100.42 129.61 36 E7_Da NovelBoundary 1 9.71 15.79 1.66 18.98 0.00 5.34 33.48 14.99 10.53 3.60 2.21 18.46 41.72 0.00 6.06 4.36 12.72 6.43 4.80 8.63 0.00 0.00 7.17 37 E7a_E8a KnownJunction 1 0.00 20.92 1.69 18.11 8.15 0.00 30.78 4.35 11.60 7.79 37.17 37.21 0.00 4.65 5.19 7.60 38.06 38.59 42.26 64.75 5.07 8.39 10.67 38 E7a_E9a NovelJunction 0 0.00 0.00 0.00 3.40 0.00 0.00 6.18 2.05 0.00 2.23 7.53 6.30 6.82 24.84 0.00 8.29 3.46 9.41 3.67 6.07 23.35 22.41 3.59 39 E7a_E10a KnownJunction 1 26.82 19.21 5.56 37.79 8.15 29.93 26.28 13.84 24.83 31.08 58.23 70.82 19.32 71.46 13.35 37.85 50.58 30.26 35.77 30.81 79.88 66.62 83.06 40 E7a_E11a NovelJunction 0 0.00 6.64 4.76 1.76 12.05 0.00 1.81 1.85 12.38 6.85 4.37 0.00 6.82 7.24 0.00 15.47 4.49 3.52 4.42 6.26 8.53 0.00 0.00 41 I7 Intron 0 3.80 9.55 4.72 9.54 10.26 1.37 17.79 14.27 17.67 10.98 1.44 17.16 17.42 1.44 5.93 6.25 8.53 3.63 3.42 12.26 2.15 2.60 3.28 42 I7_SR1 SilentIntronRegion 0 3.81 9.57 4.73 9.56 10.28 1.37 17.82 14.30 17.71 11.00 1.44 17.19 17.45 1.44 5.94 6.26 8.55 3.64 3.42 12.28 2.15 2.61 3.29 43 E8_Aa NovelBoundary 1 2.96 2.96 12.15 19.18 7.05 0.00 19.30 36.47 28.79 24.31 0.00 25.66 76.13 2.47 13.35 15.55 8.51 19.11 0.00 20.39 0.00 5.88 11.69 44 ER8a ExonRegion 0 10.54 21.29 9.78 24.22 30.30 5.86 43.95 20.43 22.02 23.90 30.60 31.91 42.25 13.99 13.07 23.46 33.51 37.92 17.65 61.84 8.93 14.94 10.93 45 E8a_E9a KnownJunction 0 2.82 9.08 0.00 10.02 19.61 2.50 13.69 0.00 5.79 12.81 4.84 18.91 0.00 4.47 4.45 24.10 8.51 38.01 4.24 45.00 6.12 10.72 0.00 46 E8a_E10a NovelJunction 0 3.48 8.55 0.00 10.02 4.24 5.22 16.69 9.20 8.13 4.89 23.58 5.40 12.82 9.59 0.00 28.71 16.74 11.52 3.58 20.01 5.68 13.96 19.89 47 I8 Intron 0 5.30 5.39 4.07 6.60 6.04 0.97 16.12 8.13 10.87 6.78 2.57 18.12 18.44 2.12 5.56 6.94 8.19 2.60 2.87 10.90 2.36 3.24 4.60 48 I8_AR1 ActiveIntronRegion 0 4.72 4.85 6.94 7.55 7.84 0.32 20.94 17.86 10.52 11.54 1.36 18.18 15.45 0.91 6.44 8.55 8.00 3.46 1.93 10.19 0.76 3.21 3.45 49 I8_SR1 SilentIntronRegion 0 5.72 5.64 4.44 6.67 6.98 1.08 15.61 9.28 11.98 7.14 2.51 17.32 16.32 1.97 5.88 6.67 7.63 2.48 2.80 10.96 2.39 2.52 4.06 50 I8_SR2 SilentIntronRegion 0 6.45 1.34 3.53 7.15 1.41 0.30 17.00 2.13 8.12 5.57 2.56 23.37 26.38 2.63 4.31 8.61 11.86 0.76 1.58 12.52 2.86 1.21 5.44 51 I8_AR2 ActiveIntronRegion 0 3.76 4.45 3.16 5.85 4.02 1.28 16.94 5.14 7.24 5.94 2.61 21.63 19.39 2.18 4.61 5.38 8.44 3.21 1.98 9.49 4.27 4.81 6.37 52 I8_AR3 ActiveIntronRegion 0 4.69 6.15 3.36 6.12 2.41 0.00 16.82 3.05 12.02 3.42 3.31 18.38 29.27 2.34 7.57 6.30 6.63 3.90 3.56 11.03 1.48 6.61 6.36 53 I8_AR4 ActiveIntronRegion 0 3.22 7.12 3.05 7.01 3.73 1.20 20.89 2.44 11.98 6.05 4.39 20.65 26.80 3.80 5.31 9.01 9.66 2.07 2.86 16.12 0.48 6.99 4.96 54 I8_SR3 SilentIntronRegion 0 4.25 5.90 1.18 6.12 4.29 0.74 14.08 4.26 5.94 4.39 2.56 16.74 25.23 2.96 3.30 8.98 11.12 3.25 5.72 9.18 1.55 5.88 6.61 55 ER9a ExonRegion 0 9.14 10.15 2.89 16.09 15.16 4.53 21.31 7.70 10.80 12.66 19.97 44.83 18.00 17.34 11.52 38.17 26.20 41.37 10.48 48.47 20.27 20.23 26.05 56 E9a_E10a KnownJunction 0 0.00 3.35 3.22 16.25 7.64 2.38 21.73 1.93 8.59 12.14 14.32 43.96 18.67 18.07 4.45 34.69 12.16 29.02 0.00 42.38 11.31 24.37 14.77 57 I9 Intron 0 4.44 10.95 3.74 8.47 9.50 2.11 14.96 5.37 10.24 5.40 3.69 18.29 17.11 3.68 5.65 8.61 8.56 5.39 3.70 10.95 2.70 10.19 6.13 58 I9_AR3 ActiveIntronRegion 0 0.00 14.66 7.15 12.89 5.24 0.00 4.80 2.16 7.57 3.82 1.93 25.44 16.61 4.13 5.68 2.60 0.00 1.85 0.00 3.63 0.92 8.51 2.20 59 I9_SR2 SilentIntronRegion 0 4.60 12.23 1.87 9.80 15.28 1.33 13.35 4.81 10.89 6.23 2.80 21.91 21.88 3.82 5.46 7.75 5.38 6.17 5.44 10.96 2.28 13.39 4.50 60 I9_AR4 ActiveIntronRegion 0 14.46 28.87 6.34 13.04 16.61 4.76 27.26 13.13 19.61 9.07 5.39 15.96 21.57 2.64 7.51 16.20 9.52 10.85 4.52 16.15 0.99 16.13 9.88 61 E10_Aa NovelBoundary 1 18.08 32.89 6.71 7.92 25.04 2.33 27.95 6.94 23.26 9.99 6.69 36.91 61.68 7.06 9.89 15.81 11.87 4.52 4.52 15.34 6.12 18.55 8.19 62 ER10a ExonRegion 1 24.77 40.44 16.26 52.86 53.04 39.95 79.04 29.40 40.72 47.94 94.29 147.98 66.57 95.84 33.06 92.34 104.03 89.99 44.88 101.79 94.78 116.49 138.99 63 E10_Da NovelBoundary 0 6.59 8.81 1.15 6.93 10.02 0.00 18.46 5.09 3.33 4.97 15.64 0.00 12.50 4.47 0.00 24.01 0.00 4.68 0.00 18.66 5.75 7.96 21.68 64 E10a_E11a KnownJunction 1 27.86 39.01 19.34 60.93 70.29 38.84 94.60 31.63 38.37 52.41 100.97 112.84 33.60 88.35 26.70 145.00 118.93 91.40 54.03 103.67 83.03 113.04 157.75 65 I10 Intron 0 13.31 28.79 6.42 15.36 15.30 4.84 21.71 13.36 15.95 11.12 5.95 17.22 16.18 4.91 4.10 8.49 11.61 5.14 4.06 11.88 1.94 17.68 7.23 66 I10_SR1 SilentIntronRegion 0 13.33 28.84 6.43 15.38 15.32 4.85 21.75 13.38 15.97 11.14 5.96 17.25 16.21 4.91 4.10 8.51 11.63 5.15 4.07 11.90 1.94 17.71 7.24 67 E11_Aa NovelBoundary 0 32.01 50.45 21.41 34.89 21.82 20.95 32.15 30.44 25.58 21.19 12.42 31.06 19.80 2.47 25.34 27.77 4.77 21.51 13.27 9.72 20.45 8.33 15.79 68 ER11a ExonRegion 0 57.11 108.98 27.98 72.84 84.67 72.64 102.27 50.80 67.38 61.98 110.33 105.70 54.55 94.59 44.28 101.96 119.36 119.35 62.11 86.87 119.73 127.19 153.41 69 E11_Da NovelBoundary 0 10.89 15.85 17.68 16.25 21.90 2.90 17.05 10.72 16.41 14.75 0.00 11.55 6.66 2.47 9.77 0.00 4.49 9.91 8.66 5.69 5.87 11.70 12.12 70 E11a_E12a KnownJunction 1 58.53 78.08 26.23 74.82 94.48 68.54 91.42 63.34 61.05 47.36 118.56 109.09 19.97 97.00 52.29 97.67 121.83 104.38 77.84 108.02 107.74 145.80 139.65 71 I11 Intron 0 21.35 18.81 7.68 6.26 22.49 3.08 16.70 5.77 6.19 6.23 2.17 1.86 11.06 1.71 2.87 4.16 4.62 2.32 2.68 6.56 0.62 5.84 6.58 72 I11_SR1 SilentIntronRegion 0 21.58 19.01 7.76 6.33 22.74 3.12 16.88 5.84 6.26 6.30 2.19 1.88 11.18 1.72 2.90 4.21 4.68 2.35 2.69 6.63 0.62 5.90 6.66 73 ER12a ExonRegion 0 58.65 50.46 29.15 59.57 101.96 42.33 67.22 58.16 74.39 66.54 101.28 85.06 42.80 111.79 56.82 118.95 118.69 100.89 88.00 87.77 116.38 167.03 160.96 74 E12_Da NovelBoundary 1 7.26 20.79 14.99 7.66 3.57 0.00 9.72 2.55 6.19 10.93 0.00 0.00 40.42 2.12 8.90 0.00 8.88 0.00 0.00 3.26 3.03 0.00 0.00 75 E12a_E13a KnownJunction 1 66.38 46.83 25.72 40.99 76.57 20.73 91.51 43.17 67.65 73.84 106.29 74.87 20.45 131.38 23.73 85.45 131.46 91.16 108.99 103.29 103.11 139.73 168.68 76 I12_SR1 SilentIntronRegion 0 16.20 11.58 11.41 8.37 19.70 0.99 8.37 3.02 7.29 2.04 0.00 2.90 4.42 3.21 1.65 5.64 2.69 2.06 2.59 2.87 0.60 1.23 6.37 77 ER13a ExonRegion 0 68.86 60.27 41.31 80.49 86.98 36.86 87.57 45.66 80.52 77.62 87.66 57.99 52.55 84.21 45.45 70.36 109.09 89.31 47.65 93.70 82.95 120.71 121.00 78 E13a_E14a KnownJunction 0 93.94 107.02 34.92 86.70 97.71 62.52 131.21 50.48 82.72 68.20 103.24 91.98 64.61 67.46 55.63 85.11 136.70 76.44 41.51 93.26 68.14 167.17 78.88 79 ER14a ExonRegion 0 68.70 100.04 48.85 120.29 127.75 71.73 125.70 59.73 94.49 75.04 103.77 96.67 81.10 77.74 61.60 74.29 118.14 59.90 42.51 108.43 64.62 179.32 104.01 80 E14a_E15a KnownJunction 0 54.60 39.01 63.95 196.68 98.56 33.33 117.08 115.79 128.64 85.37 110.29 82.23 156.65 62.81 77.14 93.99 81.53 33.00 55.72 83.09 34.16 342.91 113.02 81 ER15a ExonRegion 0 66.00 64.37 52.93 158.95 99.57 65.30 118.57 82.49 105.97 93.50 76.97 96.72 114.39 52.69 59.24 45.78 77.93 31.94 27.65 117.40 30.02 175.92 61.65 82 E15a_E16a KnownJunction 0 186.77 173.98 60.67 205.57 300.76 124.93 263.52 122.20 110.88 106.45 78.02 73.82 132.78 43.20 69.47 67.42 102.48 44.36 44.90 101.50 33.30 311.31 96.37 83 E16_Aa NovelBoundary 1 14.08 11.18 12.24 14.75 26.23 2.73 50.83 15.03 18.87 20.04 2.53 13.65 33.28 7.89 0.00 0.00 0.00 2.57 0.00 7.35 3.15 22.29 13.83 84 ER16a ExonRegion 0 147.16 141.88 64.07 195.47 199.12 106.31 190.58 104.44 98.34 101.60 94.69 181.04 156.68 88.69 88.03 65.88 109.42 53.98 49.31 127.70 24.83 204.28 85.90 85 E16a_E17a KnownJunction 0 113.13 81.43 62.56 205.77 41.77 47.93 132.09 80.38 65.54 84.94 99.34 224.47 146.42 73.40 40.79 61.35 54.51 47.13 39.44 97.92 20.08 192.64 71.96 86 ER17a ExonRegion 0 102.20 68.56 47.96 162.06 101.19 70.78 110.50 76.17 76.35 69.45 86.65 144.71 125.71 61.08 51.59 48.54 81.19 46.11 50.60 101.81 22.27 149.94 73.28 87 E17_Da NovelBoundary 0 21.34 22.04 21.02 3.53 34.63 5.79 12.06 9.41 21.21 7.60 0.00 0.00 6.82 0.00 22.99 8.72 12.62 2.24 0.00 6.01 0.00 3.12 4.35 88 E17a_E18a KnownJunction 0 137.14 87.68 65.14 186.89 152.12 89.32 138.80 81.41 71.70 66.83 82.18 114.34 90.25 59.45 65.27 54.26 62.55 41.49 38.21 90.44 14.21 137.35 54.46 89 E18_Aa NovelBoundary 0 12.37 17.69 14.31 12.49 8.66 10.11 21.42 4.81 25.29 4.43 2.68 12.60 0.00 2.47 0.00 0.00 17.77 0.00 0.00 9.08 0.00 2.63 0.00 90 ER18a ExonRegion 0 124.12 241.99 86.14 173.86 162.67 67.13 144.48 98.65 98.39 79.13 59.21 127.00 73.95 62.76 85.48 52.28 51.93 30.18 37.02 72.17 26.12 155.23 59.77