Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NPAS3 Gene 0 3.93 30.19 16.82 1.05 11.42 6.85 4.70 2.15 27.64 15.96 0.18 0.00 0.03 0.02 0.05 0.00 0.64 1.58 12.22 5.90 2.55 0.55 0.65 2 346562 Transcript 0 0.00 0.42 4.54 0.00 1.55 1.60 0.61 0.00 9.45 7.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 1.37 1.17 2.28 0.00 1.34 3 341321 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 4 356141 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 427427 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 426553 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 357798 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 IG27_AR1 ActiveIntergenicRegion 0 5.27 57.32 18.67 36.09 30.40 80.36 33.80 52.45 96.18 33.23 0.13 0.81 0.37 0.00 0.88 0.10 0.21 11.43 11.04 40.25 0.30 1.55 0.09 9 IG27_SR1 SilentIntergenicRegion 0 2.78 46.94 19.11 29.14 22.65 35.70 24.50 43.00 58.55 18.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 5.47 21.46 0.41 1.82 0.64 10 IG27_SR2 SilentIntergenicRegion 0 0.00 4.43 6.37 4.87 5.25 8.79 4.91 10.67 15.24 4.47 0.00 0.00 1.68 0.00 0.00 0.00 0.00 4.41 2.08 7.42 0.00 0.00 0.00 11 IG27_AR2 ActiveIntergenicRegion 0 1.47 22.37 8.46 12.59 13.32 23.04 8.89 18.94 52.42 9.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 3.09 4.61 15.15 0.00 0.12 0.00 12 IG27_SR3 SilentIntergenicRegion 0 2.44 18.24 6.88 11.74 21.55 24.56 10.82 6.65 34.16 5.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.38 0.49 8.95 0.00 0.11 0.00 13 IG27_AR4 ActiveIntergenicRegion 0 3.07 26.14 11.89 17.49 12.01 20.74 8.66 24.83 63.56 11.60 0.00 0.00 0.00 0.00 0.19 0.00 0.00 4.60 6.69 11.69 0.00 0.48 0.00 14 ER1a ExonRegion 0 0.00 1.27 6.63 0.00 4.64 1.91 1.84 0.00 8.22 6.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.17 3.52 1.82 0.00 0.27 15 E1_Ab KnownBoundary 0 0.00 6.51 14.69 0.00 16.30 8.29 4.11 0.00 26.42 18.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.71 10.82 3.26 0.00 0.00 0.00 16 ER1b ExonRegion 0 0.00 3.78 10.55 0.00 6.94 3.59 3.67 0.00 20.80 19.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.19 4.16 3.26 5.08 0.00 4.91 17 E1a_E2a KnownJunction 0 0.00 3.03 0.00 0.00 0.00 0.00 3.71 2.30 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E1a_E3c KnownJunction 0 0.00 0.00 6.98 0.00 0.00 2.90 0.00 0.00 20.14 14.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.95 0.00 5.00 0.00 3.76 19 I1_SR3 SilentIntronRegion 0 2.43 19.00 5.51 1.50 9.33 1.10 6.61 0.52 6.63 3.35 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.74 2.82 3.71 0.05 0.14 0.19 20 I1_AR3 ActiveIntronRegion 0 15.15 53.82 12.92 0.42 13.73 2.53 11.02 1.18 7.17 5.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 2.30 1.74 0.36 0.34 0.48 21 I1_SR4 SilentIntronRegion 0 3.04 16.84 4.91 0.55 9.31 1.41 6.20 1.10 6.82 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 3.66 4.92 0.13 0.24 0.70 22 I1_AR5 ActiveIntronRegion 0 7.24 29.45 13.78 1.45 11.94 1.04 7.17 2.20 14.25 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 2.42 5.46 0.21 0.30 0.28 23 I1_AR10 ActiveIntronRegion 0 3.69 10.06 14.22 0.15 3.63 0.00 2.43 2.09 6.71 5.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.79 3.33 0.00 0.00 0.00 24 I1_SR9 SilentIntronRegion 0 0.00 18.30 15.40 2.73 6.50 0.00 5.30 0.00 8.65 8.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 25 I1_AR11 ActiveIntronRegion 0 0.00 17.36 14.94 2.29 16.77 0.00 3.68 0.00 6.87 8.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.42 2.13 0.00 0.00 0.00 26 E2_Aa NovelBoundary 0 7.04 37.23 7.86 0.00 12.39 2.84 3.93 0.00 5.38 5.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.64 6.52 0.00 0.00 0.00 27 ER2a ExonRegion 0 0.00 2.69 1.66 0.00 1.55 0.00 3.24 1.86 0.71 2.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.42 2.86 0.00 0.00 0.00 28 E2a_E3c KnownJunction 0 0.00 0.00 2.72 0.00 0.00 0.00 0.00 2.14 1.59 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.01 0.00 0.00 0.00 29 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.19 0.00 0.00 0.00 0.00 30 ER3b ExonRegion 0 0.00 2.03 8.58 0.00 8.03 1.83 0.00 1.73 19.76 20.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.74 6.38 6.61 0.00 2.94 31 ER3c ExonRegion 0 1.33 12.23 6.90 0.42 9.98 3.08 2.17 0.92 27.93 16.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 13.51 5.35 5.86 0.87 1.99 32 E3a_E4a KnownJunction 0 0.00 5.99 3.43 0.00 0.00 2.73 4.50 0.00 6.48 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.95 3.20 0.00 0.00 0.00 33 E3a_E5a KnownJunction 0 0.00 5.79 5.77 0.00 15.03 10.45 0.00 0.00 20.63 17.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 8.28 9.01 5.68 0.00 0.00 34 E3a_E5b KnownJunction 0 0.00 3.22 1.12 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER4a ExonRegion 0 0.00 2.47 2.43 0.00 0.00 2.01 1.64 0.00 6.30 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 2.69 0.79 0.00 0.00 0.00 36 E4a_E5a KnownJunction 0 0.00 0.00 1.77 0.00 0.00 2.56 0.00 0.00 7.15 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER5a ExonRegion 0 0.00 6.97 6.30 0.00 9.56 11.00 2.08 0.00 28.23 19.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 10.01 6.38 6.61 0.00 0.00 38 ER5b ExonRegion 0 0.47 17.34 8.56 0.77 3.17 5.16 5.09 2.00 24.98 13.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 13.20 5.07 8.84 0.00 0.00 39 E5a_E6a KnownJunction 0 3.56 15.85 10.14 2.06 8.23 2.90 0.00 4.60 28.50 8.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.52 17.32 6.14 8.46 0.00 0.00 40 ER6a ExonRegion 0 1.43 14.19 6.32 1.65 7.19 6.15 3.24 2.78 21.48 18.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 23.22 5.48 7.47 1.18 0.00 41 E6a_E7a KnownJunction 0 3.78 15.66 14.01 0.00 0.00 2.90 4.15 0.00 26.62 13.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.06 41.41 2.81 11.68 0.00 0.00 42 ER7a ExonRegion 0 0.91 10.88 11.04 0.00 2.34 5.61 2.97 1.45 18.07 12.62 0.00 0.00 0.00 0.00 0.00 0.00 0.96 6.36 16.89 5.80 5.43 0.61 0.00 43 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 44 E7a_E9a KnownJunction 0 0.00 2.89 7.69 0.00 0.00 0.00 0.00 0.00 22.48 11.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.75 16.94 5.88 2.53 0.00 0.00 45 ER8a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 46 ER9a ExonRegion 0 1.81 11.64 11.29 0.00 2.16 6.15 1.70 0.64 22.93 13.18 0.00 0.00 0.00 0.14 0.00 0.00 0.00 4.86 13.81 10.78 6.26 0.89 0.32 47 E9a_E10a KnownJunction 0 0.00 9.08 6.09 0.00 3.14 2.27 0.00 2.55 25.38 12.71 0.00 0.00 0.00 2.41 0.00 0.00 0.00 5.14 4.05 10.74 2.47 0.00 3.76 48 ER10a ExonRegion 0 0.56 18.12 11.69 0.00 10.34 4.12 3.17 2.59 25.26 10.65 0.00 0.00 0.00 0.42 0.00 0.00 1.33 3.52 14.61 9.94 4.43 1.10 2.41 49 E10a_E11a KnownJunction 0 0.00 8.42 4.70 0.00 37.35 2.84 9.19 2.38 32.06 11.07 0.00 0.00 0.00 2.47 0.00 0.00 4.77 2.57 32.19 2.81 8.77 0.00 8.02 50 ER11a ExonRegion 0 0.53 14.48 5.75 0.00 3.08 12.79 4.99 1.95 35.22 14.07 0.00 0.00 0.00 0.36 0.00 0.00 1.23 5.13 23.96 11.93 4.84 0.00 0.88 51 E11a_E12a KnownJunction 0 3.78 23.15 9.93 0.00 0.00 11.24 0.00 0.00 37.35 18.16 0.00 0.00 0.00 0.00 0.00 0.00 4.39 6.05 14.31 2.43 0.00 0.00 0.00 52 ER12a ExonRegion 0 3.26 16.04 13.10 0.73 7.59 3.16 4.23 2.48 48.30 21.49 0.67 0.00 1.24 0.00 0.00 0.00 3.14 4.08 28.97 12.09 2.98 1.44 2.02 53 E12a_E13a KnownJunction 0 2.89 8.88 12.95 0.00 28.61 0.00 10.95 1.97 47.86 28.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.68 30.68 8.63 0.00 0.00 0.00 54 ER13a ExonRegion 0 0.00 12.30 10.81 1.62 10.38 5.68 4.71 0.24 44.38 14.87 0.00 0.00 0.11 0.00 0.84 0.00 3.93 2.57 14.47 10.01 0.00 0.00 1.20 55 E13a_E14a KnownJunction 0 0.00 2.63 4.44 0.00 8.49 13.74 0.00 1.89 20.37 11.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 ER14a ExonRegion 0 0.18 5.31 5.26 0.23 1.22 1.40 0.76 0.67 13.75 9.22 0.57 0.00 0.00 0.00 0.00 0.00 0.24 1.29 7.30 2.52 2.47 0.00 0.29 57 E14_Da KnownBoundary 0 3.19 12.89 1.33 0.00 0.00 2.44 2.25 0.00 19.18 15.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.20 2.66 0.00 3.93 58 ER14b ExonRegion 0 7.17 51.01 26.28 1.76 18.78 10.49 7.28 3.21 35.17 20.44 0.06 0.00 0.00 0.00 0.07 0.00 0.66 0.73 13.14 6.73 1.72 0.76 0.55 59 ER14c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00