Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CDH24 Gene 0 14.14 52.82 373.50 124.06 47.41 344.63 63.47 87.41 149.67 163.96 7.39 3.28 0.81 12.35 6.82 6.43 10.65 359.92 119.80 120.87 22.22 12.16 22.26 2 397359 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 422751 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 216697 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 487137 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 267383 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 485922 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 423762 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 ER1a ExonRegion 0 0.00 1.11 0.78 0.00 0.00 1.50 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 2.00 0.00 0.00 10 ER1b ExonRegion 0 3.81 3.22 19.05 5.10 1.09 47.50 16.82 4.88 8.39 13.67 1.58 0.00 0.00 1.09 1.95 0.00 0.00 11.09 1.86 12.58 4.11 0.85 1.79 11 E1a_E2a KnownJunction 0 3.78 0.00 19.10 1.37 0.00 8.69 1.68 4.56 19.30 11.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.07 8.66 20.65 9.95 0.00 7.43 12 E2_Ab NovelBoundary 0 3.26 6.71 36.69 13.32 3.99 21.41 8.04 12.90 31.16 39.08 2.68 0.00 0.00 5.00 0.00 0.00 0.00 45.76 18.07 42.57 18.84 0.00 7.85 13 ER2a ExonRegion 0 2.91 4.26 22.90 6.22 2.51 9.34 3.93 8.80 24.59 22.72 1.75 0.00 0.00 1.83 0.00 0.00 0.00 30.26 12.64 24.80 12.74 0.33 8.08 14 ER2b ExonRegion 0 2.99 32.98 101.02 25.17 21.63 178.20 37.07 34.30 62.30 93.41 5.68 1.77 0.00 9.52 2.26 2.66 3.65 198.84 50.91 63.49 16.61 5.87 10.81 15 E2a_E3a KnownJunction 0 17.41 41.31 204.61 57.67 19.10 153.15 41.73 79.72 123.12 166.36 4.58 0.00 0.00 4.59 5.93 7.26 4.58 529.48 151.16 142.66 23.23 7.90 35.00 16 ER3a ExonRegion 0 13.33 51.71 324.82 114.43 43.68 281.61 61.90 90.74 191.16 219.31 8.41 2.06 1.63 20.19 10.99 11.75 13.59 545.33 247.07 170.96 35.57 16.43 36.91 17 E3_Da KnownBoundary 0 25.26 156.75 578.01 203.67 165.53 1055.76 218.30 166.10 318.02 325.16 12.63 0.00 6.17 26.02 29.17 28.28 35.44 1123.14 667.50 376.79 50.04 28.90 68.72 18 E3a_E12b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER3b ExonRegion 0 12.65 78.51 403.77 143.31 56.43 599.65 135.95 103.36 211.33 225.26 8.39 11.02 2.02 15.36 16.78 22.76 13.70 695.78 299.38 193.51 44.86 15.59 40.93 20 E3b_E4a KnownJunction 0 6.45 57.56 417.34 143.47 41.85 377.57 105.55 77.30 168.98 210.30 2.68 18.46 6.66 13.54 15.58 8.72 12.90 628.06 158.69 158.07 54.73 11.45 43.71 21 ER4a ExonRegion 0 6.19 60.11 352.73 91.46 40.27 300.82 67.39 73.00 200.46 221.20 7.52 6.35 2.31 12.52 7.47 4.80 14.66 588.08 186.87 177.43 31.33 17.38 35.14 22 E4a_E5a KnownJunction 0 8.96 53.48 333.78 71.72 55.86 382.56 67.66 91.68 175.32 242.99 7.05 6.30 0.00 10.01 5.19 4.36 12.25 439.03 116.33 152.95 42.69 14.39 24.93 23 ER5a ExonRegion 0 15.68 54.01 281.26 74.35 36.12 352.89 78.71 72.57 179.89 201.28 6.36 7.42 1.03 12.68 8.62 9.48 9.75 551.10 150.30 157.99 25.79 18.38 33.88 24 E5a_E6a KnownJunction 0 23.71 58.15 234.62 88.97 47.96 319.87 112.00 88.06 173.93 181.18 14.69 0.00 0.00 25.90 0.00 8.63 20.48 439.82 139.20 138.13 25.27 13.41 39.18 25 ER6a ExonRegion 0 16.21 49.09 236.41 73.93 43.55 380.04 78.25 71.61 144.71 183.75 12.68 7.81 3.49 16.80 11.06 7.95 13.96 500.29 139.77 129.45 21.28 14.72 31.12 26 E6a_E7a KnownJunction 0 30.01 36.11 283.49 56.07 36.50 260.30 73.44 70.77 133.16 175.03 12.42 0.00 0.00 7.42 8.90 0.00 9.35 290.59 87.81 115.63 13.96 11.70 18.78 27 ER7a ExonRegion 0 12.47 45.37 326.58 86.85 35.23 335.64 67.98 90.46 159.82 230.36 9.99 2.05 2.49 15.27 9.57 5.72 17.05 491.74 203.27 161.77 26.03 16.14 29.91 28 E7a_E8a KnownJunction 0 39.86 81.10 395.28 115.80 95.08 607.43 113.10 110.69 209.72 267.49 7.37 0.00 0.00 19.07 8.78 11.11 13.00 680.95 343.73 189.19 31.88 21.86 53.69 29 ER8a ExonRegion 0 12.82 64.70 310.28 93.05 62.23 416.02 73.62 65.49 141.39 182.01 9.74 2.94 1.03 16.36 8.92 8.29 14.31 445.70 145.04 143.67 27.39 18.49 25.51 30 E8a_E9a KnownJunction 0 5.93 17.83 43.73 22.34 31.32 76.09 11.48 14.70 66.41 45.40 9.84 0.00 6.82 7.42 4.45 3.59 4.77 77.64 22.02 35.15 3.09 3.06 4.35 31 E8a_E10b KnownJunction 0 0.00 25.32 183.26 31.66 20.29 25.38 18.33 25.79 17.30 101.65 5.21 0.00 0.00 0.00 0.00 0.00 0.00 187.62 89.51 57.78 12.36 5.08 17.67 32 I8 Intron 0 0.00 10.17 11.79 11.14 3.02 44.69 13.88 5.82 11.59 14.34 0.00 0.00 0.00 2.19 0.66 0.48 0.00 83.76 20.02 19.57 3.20 2.35 2.37 33 I8_AR2 ActiveIntronRegion 0 0.00 11.87 15.28 12.88 3.39 54.44 18.14 7.84 15.88 17.35 0.00 0.00 0.00 2.47 1.04 0.75 0.00 111.86 27.48 20.51 5.03 2.64 2.98 34 ER9a ExonRegion 0 6.29 22.85 33.42 19.21 28.71 83.52 17.12 12.36 45.16 36.63 7.10 1.60 0.49 12.00 4.45 5.32 3.91 176.87 41.19 45.37 4.47 2.45 11.21 35 E9_Da NovelBoundary 0 9.78 19.40 18.86 26.54 6.96 56.73 18.06 21.77 33.56 20.15 0.00 0.00 0.00 10.42 0.00 3.76 4.77 157.73 12.89 26.78 5.50 5.39 3.84 36 E9a_E10b KnownJunction 0 0.00 2.70 4.49 7.96 3.14 7.33 0.00 0.00 5.44 13.62 7.58 0.00 0.00 9.48 0.00 0.00 0.00 40.67 8.47 12.02 0.00 0.00 0.00 37 I9 Intron 0 14.93 59.26 235.77 140.12 82.42 458.44 88.55 87.52 157.29 105.67 5.07 3.18 1.57 8.08 3.79 5.60 7.44 238.35 76.23 99.79 11.39 9.93 13.45 38 I9_AR1 ActiveIntronRegion 0 4.39 20.42 22.12 14.24 16.20 56.11 37.14 11.49 21.12 31.33 2.16 1.14 0.00 5.94 1.31 3.79 4.73 87.57 33.51 34.93 2.46 4.64 4.68 39 I9_AR2 ActiveIntronRegion 0 17.67 81.18 366.96 235.85 133.39 788.88 143.98 135.18 253.51 151.28 8.50 3.83 3.25 8.10 6.60 10.49 9.07 353.44 120.56 145.85 21.29 12.25 21.53 40 I9_SR2 SilentIntronRegion 0 18.80 68.79 281.31 159.40 92.54 510.32 90.61 103.42 181.34 122.20 5.07 3.89 1.60 9.23 3.82 4.53 8.15 263.29 78.73 111.86 11.53 11.54 14.32 41 E10_Aa NovelBoundary 0 52.31 164.05 802.40 423.22 210.19 1252.06 208.27 242.34 419.73 286.78 16.85 13.95 13.64 7.30 0.00 0.00 22.25 274.38 101.09 255.80 8.34 13.29 27.74 42 ER10a ExonRegion 0 35.91 98.17 676.87 313.90 165.39 816.36 139.59 168.94 291.03 175.41 7.37 7.34 1.00 9.27 7.72 6.56 18.20 320.75 85.49 177.09 17.89 16.21 18.72 43 E10_Ab KnownBoundary 0 35.04 147.54 844.38 378.34 155.77 908.62 110.01 195.18 301.99 162.46 7.58 25.21 0.00 14.77 6.30 4.36 9.16 497.07 89.88 201.47 26.87 11.27 23.30 44 ER10b ExonRegion 0 34.42 119.51 992.26 379.87 115.81 712.35 129.04 205.77 334.21 312.79 12.97 14.24 1.63 21.96 11.32 14.07 17.05 797.46 213.24 270.74 41.51 29.89 48.81 45 E10_Da NovelBoundary 0 3.78 5.92 69.57 27.24 26.23 59.85 14.79 27.64 14.81 30.46 2.68 0.00 0.00 0.00 0.00 7.01 0.00 127.10 8.09 31.77 0.00 2.51 7.60 46 E10a_E11a KnownJunction 0 60.53 126.89 845.98 274.26 123.85 789.72 104.53 196.01 292.01 300.07 11.95 0.00 0.00 7.12 19.66 13.07 13.09 472.65 130.07 233.30 33.30 18.98 31.50 47 I10 Intron 0 1.30 1.25 5.61 4.99 3.29 13.54 4.88 3.17 0.00 6.30 0.00 0.00 0.00 1.64 0.00 1.83 0.00 28.23 39.15 15.69 2.71 0.00 0.00 48 I10_AR1 ActiveIntronRegion 0 1.33 1.28 5.73 5.08 3.37 13.88 5.00 3.22 0.00 6.44 0.00 0.00 0.00 1.68 0.00 1.87 0.00 28.79 40.03 16.05 2.78 0.00 0.00 49 E11_Aa NovelBoundary 0 6.96 19.14 65.85 32.83 12.31 71.66 25.17 14.91 19.15 39.14 2.68 0.00 0.00 0.00 5.19 0.00 4.77 107.86 4.80 30.87 2.90 0.00 4.27 50 ER11a ExonRegion 0 30.86 88.44 701.84 215.80 63.69 599.29 104.90 140.41 228.85 247.18 9.82 0.00 0.00 9.12 4.33 6.26 13.23 410.56 111.09 143.22 24.50 17.13 18.56 51 E11_Da NovelBoundary 0 3.78 12.30 90.33 17.65 3.14 44.75 33.83 11.91 9.95 45.02 0.00 0.00 0.00 0.00 0.00 0.00 4.77 47.88 8.56 19.37 0.00 0.00 0.00 52 E11a_E12a KnownJunction 0 61.27 118.79 972.11 325.57 41.85 788.92 134.83 189.23 343.86 310.93 2.05 5.85 0.00 6.71 9.15 11.96 16.83 483.14 106.45 167.40 33.92 31.05 30.73 53 E12_Aa NovelBoundary 0 3.78 6.31 102.95 25.57 4.16 33.62 40.54 14.79 9.98 44.54 0.00 0.00 0.00 0.00 0.00 0.00 4.49 145.83 30.49 22.69 0.00 0.00 0.00 54 ER12a ExonRegion 0 16.16 54.06 518.68 131.63 39.06 347.54 63.44 94.31 148.73 171.93 6.76 1.64 0.00 12.09 7.33 4.78 8.83 259.71 84.37 114.24 19.26 8.20 16.06 55 E12_Da NovelBoundary 0 0.00 24.21 88.58 27.94 42.11 80.69 40.19 31.87 17.48 40.83 0.00 6.30 0.00 4.59 4.45 0.00 0.00 97.33 30.49 30.23 0.00 0.00 4.35 56 E12a_E13a KnownJunction 0 20.08 37.49 373.46 65.49 19.95 169.50 29.54 63.66 105.61 116.39 6.26 0.00 0.00 9.59 6.06 0.00 9.54 313.47 77.65 68.97 27.92 2.94 27.40 57 ER12b ExonRegion 0 11.84 37.21 347.42 69.20 12.39 191.87 33.59 64.98 103.66 123.19 3.79 0.00 0.00 16.12 7.95 3.41 5.38 280.04 54.86 95.27 23.10 5.48 16.10 58 I12 Intron 0 0.68 10.73 52.84 28.90 19.68 65.38 15.24 10.71 11.77 38.52 0.62 0.00 0.00 1.85 0.65 0.48 1.58 49.93 18.84 19.39 3.18 2.00 1.41 59 I12_AR1 ActiveIntronRegion 0 1.03 13.83 64.73 39.95 25.99 78.82 19.94 14.39 15.64 48.56 0.47 0.00 0.00 2.16 0.99 0.72 2.40 65.15 24.75 21.70 4.29 2.02 1.43 60 E13_Aa NovelBoundary 0 7.56 3.35 71.20 26.37 16.13 53.32 23.45 12.40 18.98 39.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63.80 12.71 7.86 0.00 6.25 11.10 61 ER13a ExonRegion 0 11.73 46.37 325.43 93.93 28.47 276.91 44.96 84.37 110.58 132.54 5.66 1.10 0.00 11.62 4.63 4.76 6.77 274.80 85.97 84.15 17.63 5.98 17.13 62 E13_Da KnownBoundary 0 35.27 119.12 1066.20 483.49 123.68 1030.77 129.22 274.33 350.23 355.03 12.58 7.50 0.00 20.60 9.15 3.67 26.65 532.59 214.97 252.98 48.12 15.55 34.40 63 ER13b ExonRegion 0 19.19 70.21 1005.97 405.91 98.68 598.21 91.67 210.48 310.60 302.49 12.87 4.46 0.99 17.15 10.03 12.84 26.81 562.57 229.09 211.41 39.05 25.41 42.51 64 E13_Db NovelBoundary 0 0.00 9.34 159.19 122.63 23.77 55.37 11.39 31.91 33.88 65.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 111.59 12.80 23.52 4.94 8.45 0.00 65 E13b_E14a KnownJunction 0 9.71 38.87 400.81 159.42 45.76 241.05 62.76 76.11 162.56 140.06 4.74 0.00 0.00 9.42 0.00 4.27 15.43 191.35 94.03 121.70 29.65 8.33 6.57 66 ER14a ExonRegion 0 11.68 43.23 256.46 83.51 38.22 209.10 34.02 44.18 80.64 86.99 4.40 1.79 0.00 6.22 4.51 2.67 6.33 144.58 48.93 62.38 15.90 11.34 7.42 67 ER14b ExonRegion 0 2.12 0.00 4.49 5.45 5.35 16.50 3.53 0.00 0.82 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 2.13 1.47 0.00 0.00 68 ER14c ExonRegion 0 0.00 0.00 0.00 0.82 0.00 1.83 1.06 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00