Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ARHGAP5 Gene 0 31.38 62.36 32.01 63.54 58.07 58.22 75.04 50.92 81.35 63.71 33.00 156.58 75.62 6.92 46.34 8.55 7.45 24.99 31.07 60.63 38.24 194.00 82.21 2 432921 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 345122 Transcript 0 31.44 58.83 18.09 44.74 40.54 74.67 66.39 35.42 65.19 51.37 33.99 218.81 66.59 9.29 56.46 9.87 18.56 21.74 32.75 68.18 47.01 165.53 76.57 4 396582 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 5 433497 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 6.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 216743 Transcript 0 24.52 22.56 19.13 35.26 28.95 27.09 54.76 47.11 72.51 56.52 25.64 56.72 7.14 2.88 0.00 8.03 9.16 13.68 18.45 73.38 35.15 117.75 44.22 7 IG22_AR14 ActiveIntergenicRegion 0 4.03 2.27 5.07 3.61 3.51 2.47 4.48 2.97 3.82 3.69 2.96 6.96 0.38 0.46 8.04 0.00 0.00 4.85 4.39 4.30 5.28 13.23 8.67 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.40 0.00 9 ER1b ExonRegion 0 1.28 1.03 1.00 0.70 1.27 0.92 2.35 0.71 7.21 3.40 0.06 2.23 3.83 2.09 2.88 2.95 0.00 5.88 2.17 8.29 12.12 24.67 16.04 10 E1a_E2a KnownJunction 0 3.63 2.89 1.36 3.63 0.00 2.21 3.44 2.55 13.60 9.19 0.00 12.00 0.00 0.00 4.45 4.36 0.00 2.57 9.13 26.97 24.83 53.95 60.95 11 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 6.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 13 ER2a ExonRegion 0 12.51 31.53 14.40 33.01 28.86 43.49 63.63 31.61 75.27 47.26 47.76 218.84 99.57 10.67 22.87 11.63 10.97 35.63 34.13 77.09 60.23 202.86 113.32 14 E2_Ab KnownBoundary 0 26.60 101.89 20.49 59.20 129.37 160.93 174.49 52.12 88.51 64.58 45.33 259.73 193.17 7.65 66.14 14.95 3.93 37.27 46.40 152.25 53.07 362.44 131.97 15 ER2b ExonRegion 0 32.23 58.13 22.82 49.40 68.79 67.64 117.83 53.08 85.27 68.04 55.75 207.97 132.65 8.80 38.79 6.86 7.62 35.60 41.86 104.46 52.81 267.37 83.19 16 E2_Da KnownBoundary 0 12.89 2.83 13.72 19.54 24.11 19.08 41.82 25.30 26.45 48.35 16.58 67.67 13.80 0.00 10.26 7.60 0.00 11.86 4.42 39.31 10.75 56.64 19.72 17 E2a_E2c KnownJunction 1 24.52 22.56 19.13 35.26 28.95 27.09 54.76 47.11 72.51 56.52 25.64 56.72 7.14 2.88 0.00 8.03 9.16 13.68 18.45 73.38 35.15 117.75 44.22 18 E2_Ac KnownBoundary 0 17.04 17.10 4.08 16.28 0.00 32.25 13.38 13.06 47.83 22.83 9.69 38.41 14.28 0.00 10.01 0.00 0.00 6.05 9.60 39.69 16.37 55.97 19.38 19 ER2c ExonRegion 0 24.69 44.06 25.73 38.16 35.68 57.46 73.26 49.55 88.52 67.67 41.88 173.18 67.22 2.17 34.82 8.92 6.60 22.79 19.11 99.29 49.95 193.07 59.71 20 ER2d ExonRegion 0 29.82 57.73 25.23 43.30 36.69 57.80 72.94 49.10 81.24 68.26 49.99 221.58 108.91 6.61 40.60 8.36 13.54 31.53 49.06 84.62 62.84 237.96 100.11 21 E2b_E3a KnownJunction 0 34.30 59.20 13.81 39.06 37.61 75.98 66.91 35.41 60.91 45.40 26.43 222.22 67.53 9.24 55.63 7.86 23.09 18.53 31.25 69.86 45.53 171.15 72.39 22 E2b_E3b KnownJunction 0 17.56 26.57 5.29 9.72 15.62 26.75 13.96 2.51 15.80 2.98 11.90 71.27 28.24 0.00 14.09 4.36 4.77 2.07 17.41 15.28 5.87 59.15 16.56 23 I2_AR3 ActiveIntronRegion 0 6.35 2.03 3.19 10.90 0.00 0.00 17.74 1.73 6.18 1.15 1.93 11.69 4.69 0.00 9.86 0.00 0.99 0.00 0.00 4.26 0.00 0.42 2.94 24 I2_SR5 SilentIntronRegion 0 0.74 0.83 2.31 8.00 2.63 1.15 1.91 0.42 3.93 4.44 0.00 19.88 9.99 0.00 11.66 0.28 0.00 2.40 1.12 15.17 1.47 7.95 2.18 25 I2_AR9 ActiveIntronRegion 1 2.12 4.07 0.00 1.85 0.00 0.00 6.24 2.84 2.47 3.69 0.00 36.80 0.34 0.00 0.00 0.00 0.00 0.00 0.00 10.64 0.00 5.06 0.00 26 I2_AR12 ActiveIntronRegion 0 10.64 9.24 6.63 12.32 9.44 1.46 17.09 8.75 8.43 4.49 1.95 17.07 8.93 0.24 10.61 2.56 0.90 4.08 7.23 15.08 5.15 15.06 11.14 27 I2_SR10 SilentIntronRegion 0 15.57 7.64 4.11 9.52 14.97 2.47 14.33 13.05 9.57 7.37 2.46 10.44 6.90 0.19 14.40 1.02 2.12 11.96 11.75 8.06 10.25 9.98 8.83 28 I2_AR13 ActiveIntronRegion 0 26.34 22.69 11.94 16.91 14.41 3.84 20.58 11.82 9.32 7.19 1.30 23.62 10.63 0.27 9.09 1.37 1.97 6.06 7.38 11.04 5.01 14.48 8.12 29 I2_SR11 SilentIntronRegion 0 13.23 8.86 6.23 11.01 9.70 3.25 16.31 6.62 8.40 6.25 1.56 9.30 7.94 0.00 10.04 1.01 0.67 2.74 5.60 7.79 1.75 11.98 5.74 30 ER3a ExonRegion 0 28.57 58.47 22.36 50.43 43.48 73.35 65.87 35.43 69.48 57.35 41.56 215.39 65.66 9.34 57.30 11.89 14.03 24.94 34.24 66.49 48.48 159.91 80.76 31 ER3b ExonRegion 0 31.13 65.01 33.94 73.53 63.75 96.97 111.94 58.38 107.21 82.97 56.70 245.06 95.88 7.61 45.73 17.58 15.12 52.32 44.96 88.92 87.34 238.17 127.15 32 E3_Da NovelBoundary 0 16.97 22.76 9.96 23.91 33.70 19.14 54.06 9.53 28.76 17.14 27.32 95.28 26.30 0.00 6.30 3.42 11.87 23.63 16.19 43.66 28.85 87.20 25.95 33 E3b_E4a KnownJunction 0 44.60 57.16 42.34 69.65 63.41 70.07 95.97 63.13 123.49 110.30 54.65 250.88 113.95 12.18 48.21 0.00 4.77 20.23 53.18 120.55 110.03 245.49 170.90 34 ER3c ExonRegion 0 32.72 49.28 37.70 68.14 62.16 62.49 92.68 59.43 117.34 100.49 55.46 252.44 103.18 9.99 36.15 2.97 11.93 41.50 43.37 115.38 102.73 230.63 142.31 35 ER4a ExonRegion 0 34.54 70.31 46.88 67.43 48.68 83.60 106.39 70.07 134.71 101.90 65.25 243.39 108.71 13.56 70.19 12.92 13.92 44.89 56.76 96.84 102.05 276.97 151.91 36 E4a_E5a KnownJunction 0 40.16 82.16 40.39 77.61 62.05 136.29 100.96 70.61 126.47 85.07 65.17 250.73 105.35 7.95 37.21 7.95 17.58 46.76 24.66 53.37 63.88 211.62 98.42 37 ER5a ExonRegion 0 49.24 83.89 50.36 88.63 63.45 120.38 123.10 76.34 151.27 100.54 68.59 266.00 145.96 6.62 53.96 13.91 13.15 57.28 54.05 117.25 71.72 275.58 135.49 38 E5a_E6a KnownJunction 0 74.09 145.24 52.69 124.46 100.76 118.85 139.42 91.02 181.48 112.26 75.86 274.44 184.73 14.54 108.04 3.33 23.84 49.54 92.80 153.47 76.23 326.80 172.52 39 E6_Aa NovelBoundary 0 30.97 19.86 4.14 14.48 36.50 0.00 41.60 6.08 13.22 11.77 0.00 18.16 26.95 0.00 4.45 0.00 0.00 6.22 14.02 5.05 5.75 3.12 11.18 40 ER6a ExonRegion 0 33.84 88.81 40.09 105.01 101.50 111.62 124.75 64.57 171.60 99.66 60.36 294.73 145.21 12.30 57.04 17.64 18.28 50.31 73.38 114.07 59.81 315.22 140.74 41 E6_Da NovelBoundary 0 24.75 31.18 1.39 21.01 11.54 0.00 15.50 10.80 7.15 3.09 0.00 11.70 21.26 0.00 4.94 0.00 0.00 0.00 8.09 9.08 2.72 0.00 8.45 42 E6a_E7a KnownJunction 0 73.35 151.09 43.17 104.85 132.94 162.63 194.98 85.27 169.38 114.67 60.59 268.14 215.73 4.94 67.50 46.57 38.71 72.25 87.44 135.63 62.33 322.46 156.13 43 I6 Intron 0 20.82 15.79 6.23 9.11 7.88 2.70 11.96 4.14 4.93 4.80 0.78 6.29 4.69 0.18 9.49 0.99 0.22 6.15 5.33 3.42 1.18 6.00 4.91 44 I6_AR1 ActiveIntronRegion 0 48.39 31.15 8.55 13.69 16.01 7.16 22.39 5.36 4.79 7.37 1.01 8.00 12.99 0.00 10.64 0.77 0.00 1.44 2.49 3.32 0.00 6.98 3.82 45 I6_AR2 ActiveIntronRegion 0 6.35 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 22.94 0.00 8.66 0.00 0.00 5.80 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 46 I6_AR3 ActiveIntronRegion 0 15.75 13.34 7.99 8.99 6.44 0.79 7.35 7.01 7.31 6.01 1.42 8.60 1.92 0.29 11.48 1.15 0.00 13.50 8.91 3.36 2.17 8.78 8.91 47 E7_Aa NovelBoundary 0 38.38 43.22 24.45 28.07 65.96 14.88 57.28 14.05 16.98 19.50 4.11 36.76 13.64 0.00 23.73 0.00 0.00 25.83 21.08 11.38 2.47 10.84 20.66 48 ER7a ExonRegion 0 63.44 127.52 67.59 122.09 122.19 99.59 127.91 97.97 127.74 113.46 36.21 183.69 94.45 7.57 102.41 10.83 8.29 26.58 45.92 68.16 35.93 308.03 98.09 49 E7_Da KnownBoundary 0 56.16 60.84 117.77 139.68 140.15 92.05 172.28 72.66 95.63 103.15 17.58 184.86 54.22 13.95 88.26 11.54 9.54 13.76 47.72 77.53 13.90 232.26 69.74 50 ER7b ExonRegion 0 27.95 45.28 23.70 52.60 40.35 34.72 36.65 33.57 40.44 37.26 4.61 30.56 16.68 1.00 27.91 1.50 0.58 4.65 8.83 23.10 2.67 66.11 18.28