Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SDR39U1 Gene 0 76.51 57.36 92.17 88.27 36.14 66.64 37.54 50.36 32.76 54.26 38.14 13.65 17.65 54.79 68.11 68.64 55.91 69.71 67.62 44.85 44.71 28.30 32.10 2 399395 Transcript 0 127.68 94.81 104.40 79.02 98.52 207.48 90.44 41.73 26.67 44.30 60.61 1.44 3.75 39.53 123.22 109.43 90.43 128.26 169.43 50.75 47.44 21.37 57.70 3 336353 Transcript 0 12.71 5.55 89.52 77.18 7.65 13.93 3.28 63.92 32.82 53.45 17.16 7.17 7.62 32.25 40.21 39.72 30.28 123.17 26.46 20.27 12.67 24.56 19.26 4 399390 Transcript 0 0.00 22.55 0.13 1.00 0.00 0.17 0.03 0.04 0.10 9.48 0.09 0.00 0.00 0.15 0.40 0.52 0.15 0.45 0.00 0.00 0.20 10.92 0.00 5 IG35_AR5 ActiveIntergenicRegion 0 1.37 0.00 1.77 1.99 0.91 0.00 0.00 0.00 0.00 0.00 0.00 2.42 1.31 2.41 2.79 0.75 1.12 0.94 3.04 2.92 8.77 3.25 0.00 6 IG35_AR3 ActiveIntergenicRegion 0 10.31 3.08 11.94 11.62 8.91 3.01 5.79 5.84 3.67 8.95 4.00 20.90 17.73 15.61 15.77 3.85 2.78 3.19 16.19 6.20 5.53 5.30 7.45 7 ER1a ExonRegion 1 40.21 27.45 18.28 15.25 20.40 48.29 23.91 3.96 2.78 6.40 16.63 0.00 0.00 13.97 47.27 26.13 23.93 20.86 33.11 17.15 9.46 3.21 12.05 8 E1_Da NovelBoundary 0 20.89 15.66 22.32 11.15 37.18 50.82 15.24 0.00 7.58 4.41 4.26 0.00 0.00 11.89 10.26 7.01 12.81 22.92 4.80 13.04 8.15 6.12 31.50 9 E1a_E2b KnownJunction 1 226.41 139.45 82.43 69.46 110.87 240.03 122.42 20.29 10.04 31.54 64.70 0.00 0.00 31.84 189.51 113.73 112.67 90.82 157.28 62.77 44.73 17.57 66.50 10 I1 Intron 0 95.88 18.63 36.62 32.70 28.49 47.22 23.27 30.61 21.87 21.58 32.54 5.49 6.01 39.59 43.27 70.64 35.14 61.85 44.16 29.50 28.92 24.76 39.99 11 I1_AR1 ActiveIntronRegion 0 96.82 18.81 36.98 33.01 28.76 47.68 23.50 30.91 22.09 21.79 32.86 5.54 6.07 39.98 43.69 71.33 35.48 62.44 44.55 29.79 29.20 25.00 40.38 12 E2_Aa NovelBoundary 0 53.05 20.59 72.82 84.60 3.40 2.61 2.25 53.56 46.59 49.61 13.53 6.30 13.64 43.15 15.70 73.57 49.09 86.60 78.03 54.46 56.28 44.46 84.17 13 ER2a ExonRegion 0 25.42 11.10 43.99 39.10 15.30 27.85 6.56 35.88 15.30 37.20 34.33 14.34 15.24 64.51 80.42 79.44 60.55 59.30 52.92 40.54 25.34 49.11 38.51 14 E2_Ab KnownBoundary 0 48.82 33.55 77.61 57.57 57.13 91.25 22.48 52.37 27.34 52.94 26.16 18.91 28.57 89.65 113.23 129.88 70.69 95.63 72.57 42.12 35.71 55.60 59.84 15 ER2b ExonRegion 0 271.79 230.71 210.98 155.48 210.18 418.93 200.02 100.22 66.04 97.37 149.52 6.11 37.80 149.42 279.71 308.58 235.21 315.42 450.70 111.18 122.93 60.59 145.68 16 E2_Da KnownBoundary 1 39.71 36.05 208.98 158.62 52.46 116.07 57.85 99.48 73.99 93.10 24.59 0.00 0.00 11.89 15.70 80.32 21.04 309.86 95.16 31.64 24.59 10.04 19.12 17 E2a_E2c KnownJunction 0 0.00 0.00 135.06 115.27 0.00 0.00 0.00 91.96 50.35 69.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 187.04 0.00 0.00 0.00 0.00 0.00 18 E2_Ac KnownBoundary 0 22.37 15.85 60.58 50.41 87.61 160.70 50.04 34.42 15.80 28.55 22.58 0.00 0.00 20.72 29.79 52.12 61.99 32.25 68.24 16.36 29.47 19.04 28.08 19 ER2c ExonRegion 0 116.41 117.54 212.48 152.37 164.29 334.12 124.98 100.94 67.19 94.96 100.51 4.33 11.26 72.76 132.88 188.43 134.68 273.10 317.90 72.34 88.15 43.34 94.56 20 ER2d ExonRegion 0 44.02 33.31 118.37 102.24 68.61 157.60 53.36 77.85 46.42 68.84 52.88 7.10 21.11 89.39 117.38 71.69 79.09 140.65 101.93 34.77 49.10 32.17 39.06 21 E2_Db NovelBoundary 0 38.82 26.57 17.86 44.55 26.06 74.50 48.62 20.62 18.46 36.75 9.37 12.60 12.82 31.43 47.72 38.28 21.97 26.12 16.94 41.80 27.74 7.41 12.89 22 E2b_E3a KnownJunction 0 47.27 20.52 59.70 76.21 36.50 44.58 14.88 49.54 32.26 51.71 40.54 6.00 32.63 68.28 97.78 41.44 76.58 54.93 52.14 51.45 46.09 18.31 15.02 23 E2b_E4a NovelJunction 0 0.00 6.12 24.19 1.86 4.33 0.00 0.00 4.11 1.39 7.25 2.21 0.00 6.33 0.00 5.19 0.00 0.00 4.60 3.86 3.20 0.00 0.00 0.00 24 E2b_E6a NovelJunction 0 3.70 16.64 6.18 0.00 0.00 2.90 12.63 2.55 1.13 2.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.88 0.00 0.00 0.00 25 I2 Intron 0 12.70 6.10 9.86 3.66 11.24 8.80 9.53 6.18 6.63 1.03 22.04 6.42 16.22 19.15 33.89 14.27 19.81 9.91 9.56 10.21 3.97 17.50 8.81 26 I2_AR1 ActiveIntronRegion 0 13.01 6.25 10.10 3.74 11.51 8.99 9.76 6.33 6.77 1.05 22.52 6.52 16.44 19.57 34.64 14.57 20.28 10.15 9.79 10.46 4.06 17.90 9.02 27 E3_Aa NovelBoundary 1 137.28 43.68 56.65 87.43 23.94 43.33 20.98 49.33 45.95 49.78 52.75 35.71 32.47 108.95 141.91 166.79 26.09 147.33 69.08 42.38 47.82 78.32 65.90 28 ER3a ExonRegion 0 112.51 57.33 146.00 137.03 31.24 36.21 33.00 84.22 57.95 81.89 107.89 37.71 40.40 136.31 154.99 96.18 166.40 85.93 110.87 120.35 139.13 43.35 50.14 29 E3_Da NovelBoundary 0 94.46 46.83 73.68 97.42 56.54 44.58 37.94 47.07 34.78 75.56 45.22 12.60 18.51 72.16 72.56 76.73 100.79 93.23 105.89 41.42 31.75 45.50 16.13 30 E3a_E4a KnownJunction 0 106.83 64.92 230.36 233.14 7.30 19.70 27.65 109.05 65.57 75.51 93.34 41.86 19.48 190.30 209.41 219.26 113.23 125.02 209.42 164.91 124.98 69.87 61.21 31 E3a_E6a NovelJunction 1 3.11 13.02 19.13 7.26 4.33 16.13 2.12 0.00 2.34 17.22 17.32 0.00 0.00 11.71 45.74 31.62 24.03 24.29 39.62 21.92 2.53 3.12 0.00 32 I3 Intron 0 152.02 98.83 68.26 124.19 69.66 80.80 51.44 67.06 46.93 77.81 37.93 38.83 44.60 66.20 51.24 81.34 40.98 57.51 45.93 54.54 29.41 73.44 46.66 33 I3_AR1 ActiveIntronRegion 0 152.82 99.35 68.61 124.83 70.03 81.21 51.71 67.41 47.17 78.22 38.13 39.03 44.84 66.55 51.50 81.76 41.20 57.81 46.17 54.83 29.56 73.82 46.89 34 E4_Aa NovelBoundary 0 198.55 104.59 126.55 250.05 78.18 109.37 92.48 87.73 67.19 114.03 33.64 67.22 31.98 31.31 39.93 50.24 43.48 44.85 21.65 79.70 31.57 89.40 34.83 35 ER4a ExonRegion 0 285.61 236.90 296.56 315.81 146.90 175.14 103.46 180.37 112.92 187.39 107.58 74.88 94.88 178.37 174.55 234.68 146.73 183.53 236.03 140.39 137.10 122.65 118.04 36 E4_Da NovelBoundary 1 99.05 169.71 40.74 61.80 74.45 73.08 66.69 46.66 24.88 50.34 16.85 6.30 34.90 58.86 4.82 38.45 30.57 61.14 38.02 52.60 20.20 64.85 8.45 37 E4a_E6a KnownJunction 0 212.41 99.19 302.21 372.68 187.69 312.04 156.38 152.67 99.16 124.93 93.39 20.86 48.37 150.80 184.31 167.39 106.87 143.97 128.29 158.13 103.66 56.09 74.86 38 I4 Intron 0 94.78 114.10 73.92 71.20 70.37 50.27 66.04 45.98 27.86 50.38 18.18 20.66 33.77 39.66 33.29 51.16 29.99 44.50 29.95 33.22 12.29 55.38 28.08 39 I4_AR1 ActiveIntronRegion 0 95.06 114.45 74.15 71.42 70.59 50.43 66.24 46.12 27.95 50.54 18.23 20.72 33.87 39.79 33.40 51.32 30.08 44.64 30.05 33.33 12.33 55.55 28.17 40 E5_Aa NovelBoundary 0 306.72 134.38 127.49 104.05 189.90 64.34 164.99 161.26 83.85 164.26 111.55 109.99 96.91 236.27 251.44 217.29 217.30 55.26 81.51 98.50 189.78 249.59 107.81 41 ER5a ExonRegion 0 0.00 13.01 0.26 0.48 0.00 0.34 0.06 0.08 0.20 3.73 0.18 0.00 0.00 0.30 0.81 1.04 0.31 0.90 0.00 0.00 0.41 7.27 0.00 42 E5_Da NovelBoundary 0 222.63 100.11 144.94 106.55 89.47 48.72 119.90 119.61 64.81 83.30 88.29 57.17 26.95 134.50 98.28 96.47 128.10 40.75 62.87 44.04 191.57 137.47 110.12 43 E5a_E6a KnownJunction 0 0.00 32.10 0.00 1.53 0.00 0.00 0.00 0.00 0.00 15.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.57 0.00 44 E6_Aa NovelBoundary 0 360.14 107.35 188.02 157.06 219.35 163.09 159.47 156.16 85.62 166.09 134.56 100.68 48.54 244.04 292.36 283.43 154.65 116.19 123.20 71.40 183.17 166.68 153.40 45 ER6a ExonRegion 0 100.20 90.03 223.24 214.18 56.43 138.25 77.41 109.90 78.88 130.69 73.26 17.35 26.71 104.82 119.01 111.52 97.49 130.81 76.69 89.60 100.39 42.45 41.46 46 E6_Da NovelBoundary 0 342.73 70.18 149.37 129.39 125.47 71.72 92.48 110.65 75.20 108.15 118.03 58.07 53.08 202.60 308.30 193.11 138.66 74.70 74.54 49.47 167.35 145.74 151.18 47 E6a_E7a KnownJunction 0 325.32 168.79 348.75 366.79 65.79 111.92 85.72 180.93 99.33 206.06 116.29 22.51 15.10 177.82 218.06 210.29 164.66 258.13 113.70 196.42 107.74 78.32 95.69 48 E7_Aa NovelBoundary 0 217.37 34.66 167.85 108.81 75.47 34.87 73.84 119.32 63.57 105.27 90.34 25.06 34.25 225.03 203.72 183.54 110.14 106.45 81.13 41.80 118.80 136.43 140.93 49 ER7a ExonRegion 0 34.44 20.44 31.32 29.82 4.61 15.02 13.15 15.01 9.94 17.63 6.40 2.53 1.16 10.20 15.15 16.51 9.76 21.67 9.73 12.14 8.72 5.39 7.20