Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 G2E3 Gene 0 40.68 124.73 48.80 82.97 91.59 62.00 102.46 55.76 54.15 91.99 63.27 126.76 64.80 67.72 41.17 45.82 48.09 43.11 24.61 68.20 16.16 62.01 25.83 2 206595 Transcript 0 34.09 80.94 28.11 39.00 68.04 48.62 78.45 30.97 40.08 71.61 105.73 143.69 76.62 96.59 35.21 56.02 69.26 55.42 27.44 61.49 30.03 46.02 34.08 3 438909 Transcript 0 0.00 13.22 5.32 4.63 4.03 14.54 8.70 5.81 10.19 6.86 11.03 3.15 7.55 3.47 5.62 0.00 5.89 2.65 0.00 13.65 1.39 6.80 0.00 4 ER1a ExonRegion 0 2.86 9.46 0.00 2.18 3.08 0.18 20.46 0.00 0.86 0.06 7.35 0.00 0.00 13.81 4.64 9.51 8.42 2.77 3.66 10.85 20.27 1.67 1.62 5 ER1b ExonRegion 1 15.77 58.52 5.51 12.07 19.55 23.59 61.64 4.15 15.52 10.95 49.24 4.15 1.48 36.02 20.00 39.01 35.02 36.64 18.11 37.11 41.38 24.85 35.61 6 E1a_E2a KnownJunction 0 9.71 8.02 2.54 7.62 7.13 0.00 7.20 2.46 0.00 10.50 23.01 13.35 25.32 4.59 10.75 15.04 7.57 22.80 0.00 8.63 10.63 5.33 20.57 7 I1_SR2 SilentIntronRegion 0 10.52 19.15 14.08 14.37 10.85 0.00 14.72 6.74 3.13 10.50 0.76 5.43 7.22 1.30 2.95 2.33 1.29 1.56 2.08 14.47 0.00 0.00 0.38 8 ER2a ExonRegion 1 4.08 4.91 1.11 5.05 6.40 0.54 6.01 0.38 7.32 9.68 66.14 21.65 15.67 17.75 5.09 6.31 46.78 18.12 10.95 23.09 35.31 9.91 9.53 9 E2a_E3a KnownJunction 1 0.00 9.87 0.00 3.30 3.14 2.44 9.63 0.00 18.11 12.49 141.09 49.37 19.64 38.55 8.90 7.09 111.36 18.74 13.55 34.32 64.68 20.51 7.09 10 ER3a ExonRegion 1 2.07 21.52 12.15 26.65 21.65 5.00 36.19 20.85 37.66 46.30 124.99 68.21 50.35 109.50 23.54 91.10 84.11 86.71 41.25 87.52 47.99 48.32 41.23 11 E3a_E4a KnownJunction 1 7.56 15.39 12.95 48.71 37.35 2.90 62.98 32.00 48.93 41.56 65.91 95.28 62.17 99.48 24.11 149.36 47.87 149.77 8.19 102.71 5.62 45.74 90.40 12 ER4a ExonRegion 0 5.13 35.49 14.88 38.24 49.19 52.25 80.58 24.72 43.12 49.74 94.54 170.29 97.11 93.26 41.64 75.85 97.96 90.90 16.86 93.39 14.99 68.74 42.98 13 E4a_E5a KnownJunction 0 3.78 70.65 23.12 43.82 63.58 102.84 185.26 31.91 51.53 64.55 154.35 204.67 80.68 110.84 33.38 90.92 127.07 45.18 40.85 92.30 28.79 81.93 44.05 14 ER5a ExonRegion 0 18.17 89.28 21.15 51.22 39.71 57.24 75.16 34.40 53.11 73.87 123.95 225.96 124.87 123.20 39.16 88.93 135.34 56.28 29.89 103.42 32.19 72.56 32.84 15 E5a_E6a KnownJunction 0 64.68 99.72 31.28 55.70 75.47 32.37 70.22 46.70 59.98 87.81 156.83 296.20 147.88 198.36 91.85 121.85 107.15 69.48 39.06 121.25 32.31 135.20 51.13 16 ER6a ExonRegion 0 15.76 62.23 19.83 45.30 38.15 50.75 93.92 30.72 49.56 75.70 99.24 209.69 108.72 128.70 39.78 80.39 79.74 54.89 27.19 90.28 29.42 68.34 41.31 17 E6a_E7a KnownJunction 1 9.78 45.45 13.81 42.79 47.11 88.07 119.90 30.15 42.13 72.45 92.55 241.43 199.99 172.17 31.03 63.23 65.26 72.13 37.46 63.85 19.21 48.01 40.55 18 ER7a ExonRegion 1 11.00 64.90 13.00 33.42 44.56 61.78 79.46 28.98 41.24 83.08 96.14 165.25 73.33 113.69 25.05 53.94 75.03 73.36 36.11 68.68 20.97 40.11 36.50 19 E7_Da NovelBoundary 0 9.71 2.76 6.27 6.26 4.33 0.00 18.77 2.51 17.62 6.53 32.43 42.91 21.59 31.31 0.00 31.19 13.00 17.91 9.60 40.84 11.43 42.86 3.41 20 E7a_E8a KnownJunction 0 25.12 72.03 14.13 29.37 59.08 66.44 52.24 22.26 37.47 68.87 115.34 104.58 33.44 91.00 27.94 47.85 59.84 53.10 40.19 59.70 19.77 31.90 42.77 21 E7a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.67 0.00 1.93 4.31 2.69 4.84 0.00 8.12 4.47 0.00 0.00 3.55 0.00 0.00 6.52 0.00 3.12 0.00 22 I7 Intron 0 4.36 5.59 1.25 4.19 5.05 4.41 22.62 4.20 8.53 4.55 12.45 33.15 22.50 22.60 4.98 18.63 12.47 17.61 4.92 16.81 3.97 17.89 7.06 23 I7_SR1 SilentIntronRegion 0 4.88 6.59 1.34 4.88 4.48 5.19 25.37 4.86 10.02 5.55 14.17 39.31 25.34 24.49 5.40 20.52 12.79 20.03 5.34 17.83 4.61 20.73 8.30 24 I7_SR2 SilentIntronRegion 0 2.60 1.25 1.12 1.25 9.86 1.13 13.02 1.58 2.26 0.00 5.94 6.57 12.32 18.02 3.98 12.78 14.16 8.46 3.91 15.69 1.35 6.38 1.80 25 E8_Aa NovelBoundary 0 0.00 6.71 3.67 8.52 17.23 0.00 10.91 4.97 4.92 1.56 21.90 25.51 12.99 29.61 24.11 23.84 26.37 20.56 0.00 17.51 5.93 13.53 15.96 26 ER8a ExonRegion 1 28.33 65.46 14.56 35.30 51.02 45.92 82.06 27.66 43.26 82.23 105.62 152.42 69.23 146.20 37.00 105.35 102.30 108.16 36.40 95.44 61.59 43.04 57.08 27 E8a_E9a KnownJunction 1 51.56 122.61 26.67 41.35 78.69 64.62 101.75 24.36 61.40 125.20 167.15 191.76 88.96 160.05 42.52 91.43 106.78 139.37 61.55 75.93 76.17 31.29 53.86 28 ER9a ExonRegion 0 27.79 83.23 18.43 35.54 68.71 71.24 105.39 38.23 52.19 87.65 128.65 190.15 73.50 157.23 46.33 109.66 89.34 148.38 37.92 98.67 59.17 57.01 63.13 29 E9a_E10a KnownJunction 1 29.78 41.44 26.85 38.29 79.88 73.37 170.73 39.92 44.39 99.95 160.15 122.29 54.38 142.21 30.29 134.32 88.17 77.68 37.55 90.38 40.34 73.36 43.88 30 ER10a ExonRegion 0 33.15 89.46 28.69 35.13 70.01 59.27 103.36 49.44 55.86 82.17 127.50 165.20 91.93 136.57 52.79 89.45 72.72 93.57 33.12 98.61 25.22 78.05 45.00 31 E10a_E11a KnownJunction 1 49.34 54.92 27.20 23.54 66.55 27.54 73.35 42.59 30.01 39.57 114.77 108.94 66.55 122.14 28.93 56.40 59.93 32.54 25.79 50.11 13.65 47.88 26.80 32 E10a_E12a KnownJunction 0 0.00 26.44 10.64 9.26 8.06 26.41 17.40 9.69 16.06 11.04 17.21 6.30 6.98 2.47 11.25 0.00 8.23 5.31 0.00 20.77 2.78 10.47 0.00 33 ER11a ExonRegion 0 40.28 103.71 32.77 36.81 73.80 63.94 105.78 37.79 42.79 81.62 130.83 226.20 150.34 114.23 51.67 64.87 79.67 35.85 29.29 80.71 17.80 91.21 40.29 34 E11_Da NovelBoundary 1 3.78 5.99 1.80 5.79 0.00 2.61 14.31 0.00 4.72 2.44 0.00 31.66 39.77 7.12 4.94 0.00 8.60 3.73 0.00 12.59 0.00 5.45 4.35 35 E11a_E12a KnownJunction 1 32.30 85.05 47.66 37.42 109.00 60.65 94.73 27.07 50.58 79.38 176.78 274.29 159.73 87.29 56.86 48.45 115.94 45.85 3.67 65.26 24.65 68.40 36.88 36 ER12a ExonRegion 0 63.82 139.62 47.40 47.54 108.22 82.88 144.53 54.03 61.64 118.43 146.72 284.08 140.73 130.24 76.80 103.34 106.86 70.39 43.83 107.25 32.83 110.60 62.09 37 E12a_E13a KnownJunction 0 66.60 171.09 29.30 23.84 78.86 42.59 113.10 44.65 55.99 102.34 98.81 246.38 85.22 98.48 53.77 34.35 37.49 39.38 8.66 105.02 13.59 64.91 33.97 38 I12_AR1 ActiveIntronRegion 0 2.72 2.20 1.22 4.23 6.69 4.54 9.58 4.68 2.07 3.80 4.13 9.43 9.47 6.81 0.73 4.53 12.66 0.90 1.09 4.99 0.34 3.85 4.41 39 ER13a ExonRegion 0 65.97 166.33 31.29 48.72 121.34 86.78 137.52 44.53 67.95 96.29 109.17 194.18 86.45 105.08 61.87 69.60 61.15 58.25 24.25 86.77 18.84 84.80 50.99 40 E13_Da NovelBoundary 1 0.00 9.34 0.00 5.29 15.45 7.78 11.97 6.12 9.35 8.38 5.00 29.26 51.94 11.12 0.00 4.10 4.39 5.93 0.00 22.88 0.00 8.27 0.00 41 E13a_E14a KnownJunction 0 90.39 147.61 46.39 63.86 112.48 131.69 112.97 50.73 71.06 77.77 127.98 177.51 101.13 62.22 74.66 73.31 87.89 35.94 9.04 71.08 22.18 58.54 51.39 42 I13 Intron 0 5.16 28.03 2.84 12.17 11.15 4.66 18.52 6.89 6.67 10.42 7.33 24.09 19.13 9.21 2.73 6.64 5.48 8.02 2.80 11.17 1.42 11.92 2.78 43 I13_SR1 SilentIntronRegion 0 1.25 7.01 0.67 8.23 5.10 4.31 16.79 3.43 0.87 4.79 5.55 28.25 16.40 11.85 3.88 4.62 3.85 15.69 2.34 14.05 0.68 12.50 3.93 44 I13_AR1 ActiveIntronRegion 0 2.53 17.40 0.57 8.30 10.59 5.93 13.38 3.64 5.47 10.43 5.99 17.62 25.96 10.57 3.20 4.66 2.62 4.29 1.63 13.61 1.62 14.33 1.17 45 I13_SR3 SilentIntronRegion 0 8.45 46.71 4.95 18.25 16.60 5.23 26.06 11.58 10.11 15.36 9.79 33.32 23.36 9.07 3.41 9.96 8.48 10.31 4.32 11.84 2.04 14.27 3.56 46 E14_Aa NovelBoundary 0 10.37 66.44 12.48 55.27 39.90 19.02 31.84 26.82 24.02 37.71 22.16 18.91 20.13 7.24 11.13 3.67 12.90 7.83 7.34 26.97 5.62 6.25 0.00 47 ER14a ExonRegion 0 48.81 142.86 64.32 86.17 103.29 81.93 134.74 65.83 75.83 110.05 153.21 160.28 69.25 95.78 76.60 101.57 118.59 86.35 48.10 96.75 44.85 76.18 56.00 48 E14a_E15a KnownJunction 0 50.60 88.47 51.68 93.63 115.62 49.86 127.01 63.30 60.16 120.31 84.50 72.02 33.11 55.57 45.49 52.89 87.24 50.32 13.27 103.87 25.21 34.11 31.33 49 ER15a ExonRegion 0 57.95 187.67 47.32 93.87 114.03 86.36 148.07 62.12 70.21 114.80 79.77 149.77 79.07 82.15 71.69 49.44 70.31 47.37 30.96 86.23 15.78 89.14 27.84 50 E15_Da KnownBoundary 1 41.71 203.85 58.16 96.92 137.78 128.56 265.37 65.88 68.32 98.07 16.21 106.08 53.08 26.90 19.04 16.06 16.74 23.38 20.52 67.62 5.87 53.70 19.12 51 ER15b ExonRegion 0 42.90 134.28 61.86 106.03 103.09 59.68 97.21 66.01 54.23 95.95 27.99 91.33 44.72 38.01 32.15 24.34 21.16 25.71 18.98 53.93 6.32 52.74 13.38