Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RASA3 Gene 0 133.62 45.68 72.72 29.79 62.82 83.07 37.00 55.52 47.68 14.21 140.04 42.59 61.69 208.07 94.82 43.67 94.92 64.18 71.01 57.58 160.20 250.84 264.48 2 389544 Transcript 0 0.44 0.00 0.10 0.00 0.21 0.58 0.13 0.00 0.47 0.00 0.95 0.48 0.45 1.65 0.64 0.19 1.52 0.09 0.40 0.27 1.26 1.89 1.91 3 334062 Transcript 0 39.86 12.31 29.55 16.41 15.26 28.64 20.46 34.65 20.20 7.30 65.31 14.86 26.17 134.99 39.15 15.89 49.98 48.01 48.55 44.69 85.16 91.24 133.96 4 IG29_SR2 SilentIntergenicRegion 0 1.12 1.11 0.52 0.63 0.57 1.47 0.57 0.14 0.97 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.39 0.91 2.11 0.47 4.19 16.70 5 IG29_AR1 ActiveIntergenicRegion 0 2.16 0.08 0.00 0.36 0.58 1.44 0.00 0.35 0.45 0.37 0.00 0.00 0.00 0.15 0.00 0.00 0.36 0.00 0.00 0.26 1.67 4.34 10.63 6 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1b ExonRegion 0 34.55 12.49 4.01 2.25 8.51 18.88 6.72 2.48 2.32 0.94 23.21 0.66 1.44 24.28 8.06 4.63 18.96 4.50 2.82 11.96 31.25 27.49 34.69 8 E1a_E2a KnownJunction 1 34.45 22.36 26.61 8.26 30.22 26.01 14.49 7.64 7.29 3.30 83.65 11.55 0.00 61.22 30.66 7.86 78.54 17.00 11.39 41.10 96.43 81.38 43.19 9 I1_AR2 ActiveIntronRegion 0 30.72 0.88 3.55 3.02 2.79 3.46 8.18 6.21 4.57 0.95 1.08 3.22 0.00 2.60 3.72 1.66 3.57 3.58 1.78 3.25 5.32 2.71 10.33 10 I1_AR6 ActiveIntronRegion 0 8.14 2.36 0.00 0.00 0.66 10.08 0.40 1.39 0.56 0.00 0.00 0.00 0.00 2.67 0.73 0.00 2.02 3.26 20.35 1.30 3.79 0.64 9.69 11 I1_SR6 SilentIntronRegion 0 4.28 1.67 0.47 0.73 0.82 1.60 2.31 0.79 1.79 0.35 0.79 2.24 0.20 2.20 0.51 0.31 1.53 3.68 16.87 2.74 4.67 2.89 15.99 12 ER2a ExonRegion 0 28.59 15.10 29.80 15.93 17.87 14.30 9.96 20.71 18.12 7.90 100.94 28.32 20.83 126.31 49.94 27.38 60.23 41.90 53.48 53.53 113.77 138.45 161.04 13 E2a_E3a KnownJunction 1 17.56 2.57 52.16 19.44 23.51 72.97 10.51 34.58 20.28 9.70 121.77 44.71 32.79 107.13 34.86 8.72 71.81 58.08 64.28 77.47 94.58 164.66 122.15 14 ER3a ExonRegion 0 37.41 32.75 44.40 22.71 50.89 72.15 28.58 32.44 30.21 8.66 125.81 47.50 37.34 180.34 69.83 27.92 82.33 56.71 63.19 62.77 150.57 200.22 197.43 15 E3a_E4a KnownJunction 1 103.80 75.18 43.85 21.38 55.43 80.81 40.89 38.08 23.81 10.77 116.24 23.41 12.82 207.08 94.57 56.82 55.54 59.20 59.01 51.01 150.80 206.72 220.15 16 E3a_E5a NovelJunction 0 10.89 6.45 0.00 0.00 0.00 0.00 0.00 0.00 1.30 1.61 2.16 0.00 0.00 14.01 5.19 0.00 0.00 0.00 4.61 3.00 0.00 11.21 11.69 17 ER4a ExonRegion 0 77.38 42.28 48.76 18.55 31.66 67.52 19.20 38.21 33.10 12.02 142.69 32.72 48.28 208.42 76.75 31.97 85.48 62.82 58.21 63.40 187.25 202.87 213.42 18 E4a_E5a KnownJunction 1 50.38 38.81 68.57 21.61 35.65 39.18 18.50 37.05 34.46 11.28 157.78 25.81 66.88 236.51 52.91 15.55 86.58 56.87 84.71 101.37 174.21 188.84 169.19 19 ER5a ExonRegion 0 53.74 30.71 58.20 17.79 24.39 36.80 21.10 41.08 32.48 9.35 118.56 36.21 54.88 200.48 83.08 24.24 87.50 55.60 85.30 66.29 164.73 186.70 159.95 20 E5a_E6a KnownJunction 0 77.72 29.99 41.69 24.67 20.12 65.30 15.99 48.43 34.11 9.43 116.61 28.66 79.05 223.15 59.46 37.34 98.92 76.11 48.75 56.44 142.21 141.94 216.14 21 ER6a ExonRegion 0 71.44 21.74 38.61 22.09 18.83 43.97 15.43 45.99 36.15 12.23 149.50 31.80 44.76 228.04 71.13 35.34 85.54 79.16 61.62 81.67 159.78 204.54 239.03 22 E6a_E7a KnownJunction 0 68.83 20.85 56.83 32.83 23.26 53.61 39.79 65.60 39.53 14.10 129.51 24.16 50.32 264.17 75.41 31.36 99.02 93.64 96.19 87.25 167.48 171.76 265.39 23 E6b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER6b ExonRegion 0 1.31 0.00 0.29 0.00 0.64 1.75 0.38 0.00 1.41 0.00 2.85 1.44 1.34 4.95 1.93 0.57 4.56 0.26 1.21 0.81 3.78 5.66 5.73 25 ER7a ExonRegion 0 83.04 22.23 43.34 23.21 75.47 93.62 44.07 50.65 44.63 8.37 194.59 66.54 71.89 323.36 84.69 56.67 135.88 108.99 129.81 69.34 202.05 257.61 323.27 26 E7_Da NovelBoundary 1 0.00 0.00 1.71 1.30 0.00 11.07 2.12 11.38 7.58 0.00 2.58 24.61 6.82 12.01 13.35 3.59 11.50 3.69 4.61 8.69 26.07 27.00 52.24 27 E7a_E8a KnownJunction 0 62.31 27.17 53.46 24.87 71.22 147.59 33.83 49.49 59.11 3.04 183.10 55.52 60.39 270.18 83.94 84.93 88.83 94.85 145.13 81.62 187.86 239.67 350.42 28 I7_AR2 ActiveIntronRegion 0 11.39 0.64 0.86 0.64 2.18 5.32 3.15 3.35 3.95 0.00 6.82 1.11 3.69 11.58 6.09 0.94 5.43 6.39 6.62 5.43 14.85 23.63 52.96 29 ER8a ExonRegion 0 81.58 30.37 51.18 20.12 51.08 90.69 35.13 59.19 52.90 6.30 162.46 54.82 59.63 244.29 79.92 57.13 113.69 93.80 115.33 73.45 175.30 251.27 301.44 30 E8a_E9a KnownJunction 0 104.83 44.79 45.71 28.70 33.45 59.11 25.39 85.72 59.61 9.03 196.68 38.11 61.03 260.29 93.83 39.22 137.82 111.80 129.32 72.48 164.45 350.13 341.37 31 ER9a ExonRegion 0 82.58 28.02 52.95 30.09 29.64 57.53 26.08 71.80 63.91 10.42 206.76 76.45 77.01 268.01 82.56 50.61 131.12 94.36 112.58 70.13 225.62 313.10 315.26 32 E9a_E10a KnownJunction 0 78.24 35.52 63.33 26.70 23.60 42.87 23.10 44.48 50.38 10.31 122.45 79.38 100.48 202.96 63.29 48.96 152.88 64.58 94.12 53.75 153.15 198.15 249.17 33 ER10a ExonRegion 0 88.26 35.13 60.30 23.82 47.43 72.88 37.03 41.92 50.80 13.05 149.79 65.19 74.08 226.74 77.93 46.21 102.18 69.27 85.01 69.32 195.69 265.24 265.48 34 E10a_E11a KnownJunction 0 91.57 20.79 58.37 23.84 35.06 78.70 33.87 26.53 52.17 14.75 121.87 38.56 67.85 224.79 93.33 35.20 107.25 65.25 46.59 75.87 196.39 247.32 212.90 35 ER11a ExonRegion 0 88.71 23.28 34.58 16.92 29.59 38.82 24.07 31.45 32.32 10.48 106.36 43.15 66.04 200.24 86.84 27.07 68.41 41.58 44.74 57.48 152.71 190.26 198.45 36 E11a_E12a KnownJunction 1 147.29 46.70 48.76 19.68 39.81 57.69 14.79 61.49 50.84 18.64 140.77 6.30 39.93 271.47 89.99 39.73 82.47 78.68 50.45 70.44 180.64 232.07 284.69 37 ER12a ExonRegion 0 123.27 50.17 55.74 19.36 44.84 82.25 40.90 50.38 51.38 18.28 161.24 42.84 77.57 253.50 101.90 41.43 92.68 95.44 76.48 77.35 187.87 266.96 251.73 38 E12a_E13a KnownJunction 0 134.02 55.45 88.26 43.55 117.32 91.94 44.60 68.88 62.82 20.33 153.51 30.91 67.53 292.19 126.58 52.12 160.64 102.93 109.65 120.74 153.58 316.33 310.98 39 ER13a ExonRegion 0 140.03 49.10 99.14 39.00 57.44 64.04 32.80 71.58 87.53 25.02 160.69 58.48 97.37 291.11 139.30 87.30 118.44 115.99 108.30 90.27 204.00 381.26 488.50 40 E13a_E14a KnownJunction 0 136.91 62.69 114.01 38.82 41.17 38.90 50.83 87.53 93.00 37.12 203.42 68.72 162.81 332.92 190.00 78.10 129.78 161.63 170.36 82.58 252.11 629.85 509.87 41 ER14a ExonRegion 0 70.90 39.49 77.72 31.90 27.21 45.42 27.00 58.82 74.72 17.36 141.91 48.39 104.43 207.34 97.57 39.50 100.76 79.99 82.51 69.11 176.30 266.66 242.53 42 E14a_E15a KnownJunction 0 108.24 50.91 55.53 22.27 20.97 76.66 28.40 58.20 55.21 18.96 101.39 29.11 81.16 208.49 92.84 41.27 82.00 90.82 43.67 37.58 130.66 205.32 232.10 43 ER15a ExonRegion 0 161.80 66.21 68.62 23.74 59.47 97.02 48.28 67.12 55.49 22.08 185.31 58.23 94.55 237.05 112.15 53.14 151.44 92.94 87.23 54.52 227.66 335.84 385.36 44 E15a_E16a KnownJunction 0 177.44 84.26 74.27 32.26 73.94 128.51 61.34 61.86 36.60 16.71 117.29 49.07 71.10 262.11 112.37 34.35 105.75 105.46 61.65 58.80 150.18 212.60 285.11 45 ER16a ExonRegion 0 115.21 48.99 55.30 23.17 87.48 93.85 41.96 58.15 48.57 18.12 153.42 33.30 73.60 245.87 69.85 43.59 114.26 87.01 86.90 57.86 184.86 207.60 330.71 46 E16_Da NovelBoundary 0 41.79 2.57 17.09 10.35 0.00 8.74 12.72 33.93 17.01 6.02 10.16 0.00 14.93 11.30 11.00 4.36 17.77 14.43 17.60 2.49 27.06 84.69 41.74 47 E16a_E17a KnownJunction 1 77.42 44.60 64.49 18.95 89.90 92.62 52.60 66.46 55.93 24.20 156.88 12.15 119.80 274.94 84.93 67.59 137.07 95.09 88.94 64.24 223.70 219.58 426.82 48 I16 Intron 0 29.55 2.22 5.20 2.79 5.74 3.16 6.99 9.60 7.19 1.98 5.10 2.77 3.48 5.36 7.91 1.25 6.39 8.69 4.26 3.22 11.39 26.24 36.15 49 I16_SR1 SilentIntronRegion 0 46.30 3.54 6.34 3.53 9.30 3.19 9.40 12.32 7.73 1.49 5.60 7.79 9.31 7.54 11.94 2.15 10.04 5.99 4.62 3.70 14.69 35.02 42.11 50 I16_SR2 SilentIntronRegion 0 33.41 2.40 6.77 3.19 6.48 2.51 6.05 9.02 9.06 2.01 4.81 1.68 2.43 5.96 6.65 0.82 5.67 9.38 5.26 2.83 12.38 24.55 40.64 51 E17_Aa NovelBoundary 0 20.97 2.50 28.47 3.56 4.33 2.73 6.45 12.90 9.20 1.40 6.95 6.30 6.82 7.12 6.18 0.00 13.46 11.90 8.66 3.26 19.95 40.35 76.57 52 ER17a ExonRegion 0 71.47 52.85 76.30 33.83 67.27 91.10 37.68 59.17 70.23 25.22 213.41 70.71 114.00 314.10 96.56 73.62 128.18 101.93 120.10 55.32 210.31 379.47 450.06 53 E17_Da NovelBoundary 0 65.42 5.72 18.01 14.88 3.99 0.00 17.93 16.22 11.17 1.61 7.58 6.30 0.00 7.48 16.44 0.00 4.21 13.93 32.47 3.07 5.13 40.97 71.79 54 E17a_E18a KnownJunction 0 104.31 70.71 111.56 36.33 80.48 111.19 44.83 57.63 87.79 29.60 308.18 91.23 101.78 291.31 93.21 72.29 176.81 105.46 112.85 84.63 247.97 358.40 416.74 55 ER18a ExonRegion 0 74.76 43.34 83.24 19.25 55.47 82.37 27.80 54.63 73.29 20.12 205.54 47.16 82.77 245.90 72.73 47.71 138.82 84.87 88.89 66.36 200.98 273.00 341.17 56 E18a_E19a KnownJunction 1 69.35 51.50 84.62 14.18 75.30 90.29 37.71 49.37 53.62 14.53 151.41 5.55 68.50 243.57 70.83 45.71 92.29 47.51 96.19 60.53 240.68 275.43 306.97 57 ER19a ExonRegion 0 120.90 60.63 92.78 35.96 83.52 107.90 52.22 70.62 71.16 20.81 249.33 95.86 116.72 317.20 99.10 84.19 145.89 92.11 130.93 57.88 234.25 427.80 466.10 58 E19a_E20a KnownJunction 0 130.91 32.43 95.21 22.84 66.30 103.58 33.48 57.01 63.54 20.47 99.92 99.18 62.50 220.20 82.70 67.50 122.02 60.69 137.42 40.52 162.10 390.67 309.36 59 ER20a ExonRegion 0 123.45 24.43 80.95 24.25 62.19 106.27 38.47 57.39 48.39 18.17 171.26 64.47 60.18 245.67 98.12 63.27 123.45 71.19 89.11 63.39 234.76 320.56 353.99 60 E20a_E21a KnownJunction 0 121.80 32.56 75.99 33.33 68.93 121.80 65.58 85.56 47.25 14.24 236.48 60.47 105.03 282.89 119.29 93.99 104.16 69.14 65.98 55.16 212.64 304.70 323.10 61 I20 Intron 0 23.97 2.63 10.52 4.08 5.08 7.99 4.64 9.95 7.98 2.41 11.14 4.73 7.78 14.16 14.70 3.92 8.85 10.79 10.89 8.60 28.25 51.66 57.99 62 I20_SR1 SilentIntronRegion 0 25.56 2.74 10.61 3.93 5.54 8.39 4.94 10.16 8.07 2.55 11.64 4.75 9.71 16.29 14.82 4.13 8.79 10.55 11.47 9.65 29.76 54.54 59.91 63 I20_AR5 ActiveIntronRegion 0 19.15 1.91 13.20 5.72 4.32 8.21 4.22 12.44 11.68 2.24 11.00 3.12 3.08 10.64 16.35 1.79 10.00 11.28 7.34 7.40 24.98 44.21 57.35 64 E21_Aa NovelBoundary 0 45.42 0.00 10.08 6.06 7.13 15.16 5.43 15.73 15.86 1.05 15.11 13.95 6.82 9.59 8.90 0.00 8.42 14.59 4.42 6.20 38.86 27.19 21.08 65 ER21a ExonRegion 0 75.33 37.38 69.37 26.30 45.00 77.53 38.71 53.59 41.59 10.36 116.77 50.32 53.61 217.62 102.53 46.89 100.94 47.77 60.95 59.77 163.23 229.27 238.81 66 E21a_E22a KnownJunction 0 53.34 36.31 84.59 22.71 53.23 76.66 41.03 25.96 45.34 10.42 97.39 18.46 63.63 136.50 119.54 44.69 109.40 58.57 35.95 49.15 156.17 241.93 175.42 67 ER22a ExonRegion 0 95.47 25.30 52.82 25.13 37.15 78.31 32.37 54.58 41.52 8.90 142.66 27.48 54.21 234.20 112.87 42.55 107.37 74.62 83.49 71.54 186.11 199.26 284.12 68 E22a_E23a KnownJunction 0 217.67 23.88 85.45 40.15 63.07 132.59 54.10 60.01 56.02 8.27 150.25 36.16 26.95 241.10 89.75 53.66 122.11 74.16 105.98 85.90 201.02 213.52 330.78 69 ER23a ExonRegion 0 116.42 34.21 84.52 45.90 60.52 94.78 37.65 58.24 56.55 13.96 178.56 42.73 85.34 254.07 107.31 51.66 123.82 98.19 104.75 70.28 193.82 241.09 333.48 70 E23a_E24a KnownJunction 0 172.48 63.94 105.97 48.05 96.77 98.64 48.09 59.68 63.22 14.61 230.95 49.07 134.08 252.46 146.49 73.57 124.45 112.50 184.95 88.53 238.65 407.82 459.34 71 ER24a ExonRegion 0 210.67 63.40 97.44 38.94 92.76 107.29 47.13 68.44 50.65 16.26 131.37 36.17 56.25 193.28 112.49 44.03 87.43 54.06 59.85 51.86 140.95 272.93 259.88 72 ER24b ExonRegion 0 10.88 3.78 2.28 0.00 7.26 3.67 1.13 3.70 0.88 0.49 1.10 5.57 2.01 5.80 2.90 0.42 0.94 2.38 0.91 2.13 2.83 10.72 2.52