Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 F10 Gene 0 8.80 0.92 3.64 5.85 2.43 2.66 1.09 3.57 6.22 2.26 0.38 0.48 0.00 0.12 0.13 0.13 0.29 2.94 5.52 3.32 99.01 32.16 46.66 2 409306 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.59 0.00 0.00 3 375551 Transcript 0 3.04 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.06 12.00 0.00 4 375559 Transcript 0 10.34 0.00 0.41 2.79 0.00 3.35 0.00 2.54 3.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.82 17.38 22.95 5 477269 Transcript 0 0.00 0.00 0.76 0.84 0.00 0.00 0.00 2.91 1.53 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 1.61 3.24 0.00 3.96 6 483537 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.17 0.24 7 410083 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 418726 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 498455 Transcript 0 0.00 0.00 0.05 0.00 0.00 0.00 0.52 0.50 2.34 0.02 0.00 1.17 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.17 0.55 10 ER1a ExonRegion 0 4.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.19 0.00 29.09 2.50 21.73 11 ER1b ExonRegion 0 6.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.19 0.00 44.07 4.17 38.18 12 ER1c ExonRegion 0 22.04 0.00 0.00 1.68 4.09 0.65 1.32 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.30 0.00 90.74 21.82 87.24 13 ER1d ExonRegion 0 31.75 0.00 0.00 2.73 5.35 3.67 2.65 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.48 0.00 122.31 39.59 129.21 14 ER1e ExonRegion 0 24.40 0.00 0.00 2.93 6.86 1.94 1.23 0.00 3.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 21.53 0.00 95.95 40.33 121.92 15 E1a_E2a KnownJunction 0 0.00 0.00 0.00 3.10 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 4.61 0.00 25.95 7.78 17.24 16 ER2a ExonRegion 0 6.78 0.00 0.55 8.59 0.85 2.32 0.43 2.45 7.63 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 21.39 0.00 176.99 63.05 120.27 17 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E2a_E4a KnownJunction 0 21.86 0.00 1.39 7.76 3.57 0.00 0.00 0.00 1.10 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.93 0.00 131.22 51.93 124.03 19 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.34 0.48 20 E4a_E5a KnownJunction 0 3.26 0.00 1.83 5.63 12.73 0.00 2.25 2.38 6.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.48 9.51 0.00 155.37 65.95 64.02 21 ER4a ExonRegion 0 12.78 0.00 2.01 9.38 9.10 0.00 1.32 0.28 4.05 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.40 9.81 0.00 177.35 65.01 109.71 22 ER5a ExonRegion 0 15.54 1.82 2.78 11.13 13.43 1.69 1.47 4.88 14.97 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 12.88 0.95 238.99 75.35 79.37 23 E5_Da NovelBoundary 0 3.04 2.96 1.39 2.90 0.00 24.87 0.00 2.51 9.06 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 2.94 0.00 0.00 4.01 24 E5a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E5a_E6c KnownJunction 0 43.12 0.00 0.00 10.85 3.90 0.00 0.00 4.60 9.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.27 0.00 246.24 85.54 97.23 26 ER6a ExonRegion 0 0.00 0.00 0.05 0.00 0.00 0.00 0.52 0.50 2.34 0.02 0.00 1.17 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.17 0.55 27 E6_Ab KnownBoundary 0 0.00 0.00 0.00 1.70 0.00 0.00 2.16 1.81 10.53 0.00 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER6b ExonRegion 0 0.07 0.59 0.81 0.61 0.78 0.39 0.31 1.92 3.20 1.39 0.00 0.36 0.00 0.00 0.00 0.00 0.96 1.38 0.97 1.12 2.94 1.46 1.52 29 E6_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.78 0.00 6.90 3.59 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.14 0.00 5.31 0.00 0.00 0.00 30 ER6c ExonRegion 0 24.88 1.58 1.27 7.05 1.72 4.75 0.52 10.32 11.94 2.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 3.48 1.14 204.24 74.96 77.52 31 E6a_E7a KnownJunction 0 12.52 0.00 3.61 6.63 4.33 5.79 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 146.41 30.68 65.64 32 ER7a ExonRegion 0 13.65 0.42 2.74 6.74 1.94 3.37 1.93 3.44 8.03 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 7.89 0.52 191.17 53.19 72.96 33 E7_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.14 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.31 0.00 2.56 8.83 0.00 3.76 34 E7a_E8a KnownJunction 0 24.52 0.00 0.00 9.26 0.00 0.00 0.00 1.64 3.01 2.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.84 0.00 187.06 51.07 97.57 35 ER7b ExonRegion 0 0.00 0.00 0.76 0.84 0.00 0.00 0.00 2.91 1.53 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 1.61 3.24 0.00 3.96 36 E7_Db NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.46 0.00 0.00 2.82 0.00 37 ER8a ExonRegion 0 25.25 2.34 1.21 9.48 2.60 2.16 0.62 1.73 9.76 2.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.91 6.46 0.00 212.34 70.07 101.17 38 E8_Da KnownBoundary 0 25.19 3.22 3.49 13.95 7.39 8.52 3.84 0.00 14.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 0.00 0.00 141.10 29.39 70.68 39 E8_Db NovelBoundary 0 3.78 0.00 1.83 0.00 0.00 5.34 0.00 0.00 4.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.01 0.00 74.50 18.19 19.80 40 ER8b ExonRegion 0 17.44 1.74 2.45 7.07 3.95 7.34 1.07 0.58 12.88 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.76 0.00 150.59 38.79 54.40 41 E8c_E9a KnownJunction 0 3.04 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.06 12.00 0.00 42 E8d_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.59 0.00 0.00 43 E8e_E9a KnownJunction 0 16.74 0.00 0.00 3.60 0.00 4.54 0.00 4.15 7.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 105.02 27.13 38.75 44 ER8c ExonRegion 0 10.88 0.00 2.63 4.77 0.00 3.93 0.00 1.73 6.09 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 141.67 37.35 36.50 45 ER8d ExonRegion 0 7.76 0.00 1.23 3.86 0.00 4.28 0.00 2.88 3.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 117.53 29.52 30.35 46 ER8e ExonRegion 0 12.17 0.00 1.23 2.73 0.00 3.67 0.00 3.46 3.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 106.33 25.00 30.10 47 E9_Aa NovelBoundary 0 3.04 2.89 14.40 5.16 0.00 2.78 0.00 0.00 8.71 2.20 2.21 0.00 0.00 0.00 0.00 0.00 0.00 9.20 7.53 2.81 2.84 0.00 14.43 48 ER9a ExonRegion 0 9.25 1.89 11.77 11.81 3.00 5.36 2.36 7.12 8.64 6.20 1.62 1.49 0.00 0.38 0.57 0.55 0.62 7.92 3.99 11.56 111.67 36.07 47.76 49 E9_Da KnownBoundary 0 6.96 9.08 12.36 5.09 8.15 7.78 0.00 1.81 9.64 5.61 0.00 6.30 0.00 0.00 0.00 0.00 0.00 6.47 9.22 5.94 28.05 23.15 30.22 50 ER9b ExonRegion 0 12.31 3.25 4.07 4.61 4.12 4.71 1.96 1.68 4.96 2.59 0.00 2.06 0.00 0.00 0.00 0.00 0.00 1.82 3.87 7.86 69.94 22.85 24.49 51 ER9c ExonRegion 0 2.12 0.00 0.00 2.04 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00