Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GPC6 Gene 0 2.03 5.15 7.90 8.22 5.24 22.85 15.17 4.33 5.17 5.78 0.00 3.25 0.00 0.73 0.00 0.00 0.12 39.61 46.81 10.58 96.36 43.87 69.92 2 377047 Transcript 0 0.77 3.97 4.99 5.93 5.79 25.09 13.34 4.46 5.90 5.24 0.00 3.53 0.00 1.23 0.00 0.00 0.18 42.94 36.70 8.39 127.16 49.49 82.99 3 428510 Transcript 0 0.14 0.77 1.38 0.00 1.01 0.69 0.96 0.00 0.70 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 3.09 0.00 0.87 0.00 2.24 4 ER1a ExonRegion 0 0.80 2.05 6.80 2.97 5.43 8.14 9.95 3.19 2.85 3.41 0.00 1.62 0.00 0.44 0.00 0.00 0.00 22.99 41.31 6.20 55.37 19.50 41.73 5 E1_Ab KnownBoundary 0 3.78 0.00 22.12 11.89 4.07 15.50 8.44 3.70 3.27 9.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58.16 67.48 5.75 88.65 43.66 51.22 6 ER1b ExonRegion 0 0.99 7.05 13.29 10.75 1.08 6.25 16.31 3.28 3.57 6.65 0.00 4.03 0.00 1.07 0.00 0.00 0.00 32.53 40.71 14.37 83.71 29.47 47.98 7 E1a_E2a KnownJunction 0 0.00 16.97 15.20 18.51 10.95 6.64 20.36 4.68 8.45 11.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46.43 74.92 14.57 94.77 36.50 62.57 8 I1_AR3 ActiveIntronRegion 0 0.00 0.25 0.00 5.79 0.00 0.00 2.65 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.39 9.56 4.26 2.20 2.08 14.68 9 I1_AR4 ActiveIntronRegion 0 0.00 1.02 0.46 5.42 2.68 0.92 11.01 0.00 0.47 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 13.26 5.30 0.97 0.42 5.02 10 I1_AR6 ActiveIntronRegion 0 2.41 7.50 13.30 32.47 9.38 8.44 15.76 5.01 2.20 5.10 0.00 1.26 0.00 0.00 0.00 0.00 0.00 6.87 14.80 3.50 1.93 0.91 1.61 11 I1_AR8 ActiveIntronRegion 0 0.85 6.04 9.89 27.00 5.60 1.53 12.92 2.54 1.47 3.62 0.00 1.02 0.00 0.00 0.00 0.00 0.00 4.60 9.80 1.80 0.00 1.10 1.45 12 I1_AR10 ActiveIntronRegion 0 3.79 6.87 7.82 13.87 8.86 5.01 22.15 4.76 3.25 3.09 0.00 3.79 0.00 0.00 0.00 0.00 0.00 7.50 20.38 4.14 0.22 1.59 2.09 13 I1_SR6 SilentIntronRegion 0 1.88 2.95 4.35 10.95 4.19 3.26 14.49 2.39 1.35 1.65 0.00 1.09 0.00 0.11 0.00 0.00 0.00 6.68 14.94 3.34 0.55 0.64 3.57 14 I1_AR20 ActiveIntronRegion 0 5.21 3.48 6.64 6.73 4.86 3.53 13.30 1.93 0.59 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.23 20.09 1.59 0.24 0.67 3.14 15 ER2a ExonRegion 0 3.66 14.96 21.47 21.88 11.12 24.89 23.32 8.76 11.19 10.27 0.00 6.75 0.00 2.36 0.00 0.00 0.00 45.23 67.55 16.02 129.91 59.56 79.25 16 E2a_E3a KnownJunction 0 3.63 9.67 24.63 36.56 3.82 51.90 29.94 10.47 15.97 12.11 0.00 12.60 0.00 0.00 0.00 0.00 0.00 38.63 72.57 14.57 120.65 72.68 120.87 17 I2_SR2 SilentIntronRegion 0 2.07 2.56 2.74 6.59 3.12 9.81 15.65 0.66 0.51 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.19 17.45 3.52 2.14 0.00 4.17 18 I2_SR3 SilentIntronRegion 0 2.31 7.44 9.04 11.00 5.78 7.44 16.79 2.67 1.24 0.89 0.00 1.43 0.00 0.13 0.00 0.00 0.00 8.15 15.87 4.74 0.44 0.10 4.75 19 I2_AR4 ActiveIntronRegion 0 0.59 1.13 3.79 9.76 5.81 18.20 11.75 1.51 2.56 2.38 0.00 1.10 0.00 0.00 0.00 0.00 0.00 5.17 15.81 3.35 1.16 0.00 2.86 20 I2_SR4 SilentIntronRegion 0 0.86 2.66 1.28 4.71 2.99 8.13 10.36 1.33 0.51 1.17 0.00 1.96 0.00 0.03 0.00 0.00 0.00 4.47 13.52 3.18 0.65 0.37 2.07 21 I2_AR5 ActiveIntronRegion 0 5.63 5.23 6.81 13.41 12.70 13.22 16.84 1.41 0.70 1.70 0.00 2.23 0.00 0.00 0.00 0.00 0.21 9.09 21.27 2.76 1.01 0.35 5.81 22 I2_SR5 SilentIntronRegion 0 0.97 3.06 1.92 6.84 4.04 8.07 11.26 1.14 1.38 1.68 0.00 2.06 0.00 0.06 0.00 0.00 0.00 6.60 15.52 2.47 0.53 0.25 2.86 23 I2_AR18 ActiveIntronRegion 0 3.10 6.86 4.84 13.23 8.18 9.86 13.41 4.07 1.49 2.98 0.00 1.24 0.00 0.00 0.00 0.00 0.00 10.02 17.44 6.19 1.47 0.55 2.54 24 I2_SR11 SilentIntronRegion 0 0.67 2.85 6.34 11.28 3.70 7.54 10.32 3.26 1.62 2.45 0.00 0.75 0.00 0.00 0.00 0.00 0.00 16.23 19.98 7.08 0.70 0.88 2.29 25 I2_AR21 ActiveIntronRegion 0 0.00 2.46 0.87 12.44 0.00 8.71 8.99 1.73 2.47 0.38 0.00 1.26 0.00 0.00 0.00 0.00 0.00 1.85 13.80 7.89 0.00 0.00 2.69 26 I2_AR22 ActiveIntronRegion 0 2.94 0.40 7.67 16.83 2.16 7.99 13.74 4.01 3.35 3.36 0.00 1.34 0.00 0.00 0.00 0.00 0.00 3.08 14.20 8.23 0.08 1.34 3.48 27 I2_AR29 ActiveIntronRegion 0 0.00 0.32 1.36 3.07 0.00 3.79 10.69 1.36 0.65 0.30 0.00 2.52 0.00 0.35 0.00 0.00 0.00 2.12 15.27 3.76 1.79 0.00 2.39 28 ER3a ExonRegion 0 5.95 10.26 18.12 18.21 7.25 32.23 20.75 10.26 7.90 10.36 0.00 3.76 0.00 0.94 0.00 0.00 0.00 62.09 92.16 16.12 140.94 64.81 121.65 29 E3a_E4a KnownJunction 0 0.00 2.96 7.30 9.46 15.79 34.47 14.35 4.15 6.92 5.16 0.00 6.30 0.00 0.00 0.00 0.00 0.00 95.55 53.46 11.95 138.75 64.60 72.05 30 Ix_AR1 ActiveIntronRegion 0 1.67 2.34 4.43 10.10 5.19 8.01 10.76 2.34 1.90 2.80 0.00 0.22 0.00 0.00 0.00 0.00 0.00 3.01 13.71 1.68 0.27 0.88 1.96 31 ER4a ExonRegion 0 0.65 1.00 3.62 6.10 2.84 26.71 18.58 2.24 5.36 6.62 0.00 0.70 0.00 0.85 0.00 0.00 0.00 70.15 53.52 14.52 103.07 45.55 79.59 32 E4a_E5a KnownJunction 0 0.00 3.16 0.00 2.76 4.33 28.90 18.20 0.00 4.37 5.86 0.00 0.00 0.00 5.24 0.00 0.00 0.00 57.37 52.61 2.88 86.12 52.72 63.77 33 I4_AR5 ActiveIntronRegion 0 6.70 7.46 5.21 33.96 2.68 7.49 30.12 4.75 3.71 0.86 0.00 0.00 0.00 0.54 0.00 0.00 0.00 5.54 16.19 6.74 0.00 2.08 1.96 34 I4_AR6 ActiveIntronRegion 0 7.11 5.60 15.78 33.48 13.33 18.57 25.01 6.37 3.32 2.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 3.22 9.45 3.79 0.17 0.10 1.85 35 I4_AR13 ActiveIntronRegion 0 6.14 3.68 3.35 5.75 3.79 6.48 12.97 3.99 1.74 0.10 0.00 0.80 0.00 0.00 0.00 0.00 0.00 8.26 14.53 3.33 0.87 0.12 2.05 36 ER5a ExonRegion 0 2.75 4.33 1.17 4.66 0.49 29.68 13.14 3.13 5.11 6.19 0.00 1.19 0.00 0.60 0.00 0.00 0.00 39.45 38.91 15.58 96.37 50.50 56.60 37 E5a_E6a KnownJunction 0 3.56 2.96 1.69 3.73 4.33 60.65 12.28 7.31 5.24 13.40 0.00 5.55 0.00 0.00 0.00 0.00 0.00 59.94 44.61 18.34 135.05 56.58 64.96 38 ER6a ExonRegion 0 3.37 3.74 2.31 3.06 3.18 35.92 17.14 3.48 4.12 7.02 0.00 5.44 0.00 0.00 0.00 0.00 0.00 51.58 59.31 10.14 135.97 57.57 85.08 39 E6_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.91 0.00 0.00 0.00 0.00 40 E6a_E7a KnownJunction 0 0.00 0.00 5.38 3.60 0.00 13.06 6.67 3.94 1.71 6.45 0.00 6.30 0.00 0.00 0.00 0.00 0.00 34.70 13.65 5.82 141.90 58.36 67.10 41 ER6b ExonRegion 0 0.14 0.77 1.38 0.00 1.01 0.69 0.96 0.00 0.70 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 3.09 0.00 0.87 0.00 2.24 42 I6_AR5 ActiveIntronRegion 0 3.21 5.54 10.19 6.03 2.52 5.35 7.84 0.01 0.51 1.50 0.00 0.62 0.00 0.00 0.00 0.00 0.00 3.03 13.77 1.44 1.04 0.00 3.67 43 I6_SR5 SilentIntronRegion 0 4.03 3.65 7.67 5.08 7.44 12.81 9.88 0.96 2.29 1.42 0.00 2.67 0.00 0.67 0.00 0.00 0.00 10.25 27.00 1.41 0.68 0.52 2.06 44 I6_AR6 ActiveIntronRegion 0 2.91 3.08 6.69 11.31 7.10 8.82 6.08 0.00 1.14 0.16 0.00 1.49 0.00 0.00 0.00 0.00 0.00 2.77 20.29 2.97 0.46 0.00 1.96 45 ER7a ExonRegion 0 2.36 3.34 3.48 5.86 1.70 24.71 14.52 3.65 4.43 6.09 0.00 7.74 0.00 1.78 0.00 0.00 0.00 53.77 40.36 11.45 154.45 45.49 86.38 46 E7a_E8a KnownJunction 0 0.00 9.34 5.94 10.62 4.33 36.06 12.06 7.02 6.89 5.48 0.00 0.00 0.00 2.47 0.00 0.00 0.00 53.77 62.97 9.27 145.61 44.39 110.03 47 ER8a ExonRegion 0 1.23 4.69 6.04 6.64 5.37 37.61 12.54 4.89 7.66 6.44 0.00 6.17 0.00 1.10 0.00 0.00 0.96 47.65 34.68 11.48 148.94 53.39 99.60 48 E8a_E9a KnownJunction 0 0.00 3.29 3.31 3.53 16.30 25.10 19.83 5.96 12.50 4.89 0.00 0.00 0.00 2.47 0.00 0.00 0.00 54.30 34.92 5.82 159.76 67.60 108.58 49 ER9a ExonRegion 0 0.99 5.08 3.98 8.26 7.41 30.96 17.84 2.59 5.27 3.90 0.00 2.90 0.00 0.33 0.00 0.00 0.31 33.43 29.02 8.67 84.06 57.67 67.52 50 IG30_AR1 ActiveIntergenicRegion 0 4.83 6.07 6.08 19.93 13.04 47.16 23.95 5.46 7.09 8.15 0.03 9.73 0.00 0.43 0.00 0.00 0.00 18.94 43.57 8.74 51.24 91.13 76.32 51 IG30_SR1 SilentIntergenicRegion 0 4.28 6.16 11.63 43.19 17.00 45.25 17.31 14.41 9.16 10.08 0.68 13.02 0.00 0.55 0.00 0.00 0.00 19.60 60.19 11.31 31.55 125.21 60.39 52 IG30_AR2 ActiveIntergenicRegion 0 8.43 8.15 18.72 28.65 17.35 44.34 21.97 7.66 7.45 6.75 0.06 6.41 0.00 0.10 0.00 0.00 0.00 6.10 26.20 7.18 17.39 59.55 33.85