Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LIG4 Gene 0 1.59 1.65 0.53 0.66 1.36 0.89 1.67 0.86 1.98 1.21 1.88 1.13 0.28 3.70 0.96 5.68 2.41 1.82 0.77 2.76 2.09 0.89 0.92 2 405925 Transcript 0 4.17 4.50 0.67 1.77 2.64 2.03 1.30 0.63 0.91 1.90 4.96 8.41 0.00 5.29 2.59 9.31 9.10 5.48 3.53 7.58 17.26 3.59 0.72 3 442234 Transcript 0 0.51 1.76 0.41 0.45 1.46 1.13 1.20 1.15 1.40 1.30 2.09 1.44 0.63 2.27 1.13 4.95 0.88 2.09 0.21 2.35 3.56 1.19 2.08 4 356922 Transcript 0 6.29 18.65 5.79 3.07 9.03 8.05 15.18 11.92 22.81 13.94 17.06 10.07 9.64 28.99 9.45 63.23 17.53 19.10 4.43 28.82 18.38 5.73 8.56 5 ER1a ExonRegion 0 8.34 9.01 1.35 3.54 5.27 4.07 2.61 1.27 1.81 3.81 4.71 2.87 0.00 10.58 5.17 11.95 9.97 8.97 7.06 12.47 13.45 7.19 1.45 6 E1_Da NovelBoundary 0 0.00 3.35 3.43 1.37 0.00 0.00 0.00 0.00 3.50 6.02 7.32 0.00 0.00 18.60 0.00 3.25 8.13 2.11 3.86 11.44 8.77 5.51 0.00 7 E1a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.21 13.95 0.00 0.00 0.00 6.66 8.23 1.99 0.00 2.68 21.07 0.00 0.00 8 I1 Intron 0 10.10 7.90 6.09 6.71 9.25 4.77 5.23 5.52 6.48 10.35 8.58 41.09 8.72 20.09 9.13 6.91 5.35 6.89 6.63 20.83 4.38 6.76 3.86 9 I1_AR1 ActiveIntronRegion 0 8.16 16.13 1.66 5.52 0.00 0.00 0.60 2.34 1.67 4.26 4.38 5.60 0.88 18.83 8.01 6.06 3.74 3.96 6.50 9.16 3.50 3.31 0.67 10 I1_SR1 SilentIntronRegion 0 14.51 6.27 9.19 12.03 10.50 5.90 9.15 6.97 10.95 14.58 11.74 60.66 15.90 27.94 18.43 8.32 7.10 7.74 9.88 33.84 5.57 7.24 5.03 11 I1_AR2 ActiveIntronRegion 0 11.60 7.21 7.29 4.00 16.26 6.16 5.34 5.40 5.38 10.80 8.22 51.69 11.06 16.14 3.81 6.94 4.22 5.39 6.46 17.72 1.32 9.07 4.49 12 I1_SR2 SilentIntronRegion 0 4.60 6.70 4.88 3.61 9.32 3.13 2.79 7.26 6.06 9.00 8.79 36.40 0.99 16.65 3.56 5.78 6.41 12.36 3.09 14.17 6.97 5.33 4.09 13 I1_AR3 ActiveIntronRegion 0 3.06 6.38 1.10 1.85 1.72 5.99 1.69 3.05 1.60 5.68 4.63 8.21 1.18 10.96 0.88 5.11 3.19 4.27 1.94 10.49 5.04 6.27 2.53 14 E2_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 3.99 2.21 0.00 7.60 2.92 10.85 10.37 0.00 0.00 4.77 5.69 15.98 4.58 7.30 8.85 3.26 8.65 5.39 11.52 15 ER2a ExonRegion 0 1.10 0.00 0.00 0.00 2.78 1.91 0.69 0.00 0.00 0.00 2.01 0.00 0.00 1.29 1.07 0.00 0.00 0.00 0.00 1.11 2.29 1.08 1.53 16 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E3_Aa NovelBoundary 0 6.67 0.00 0.00 7.19 7.64 2.84 9.45 8.63 22.08 8.49 2.68 0.00 0.00 10.48 5.19 15.38 3.55 4.60 0.00 14.00 4.94 0.00 0.00 18 ER3a ExonRegion 0 9.62 8.15 5.39 3.28 9.67 5.14 13.54 8.28 22.62 12.06 16.74 7.53 4.19 34.54 5.54 53.92 22.07 13.67 4.43 22.61 13.91 2.89 6.95 19 E3_Da NovelBoundary 0 0.00 2.83 1.51 0.00 0.00 2.84 1.99 2.55 4.69 5.75 2.53 0.00 0.00 7.30 0.00 13.07 9.44 0.00 0.00 14.45 0.00 3.00 4.10 20 E3a_E4b KnownJunction 0 2.96 29.14 6.18 2.86 8.40 10.96 16.83 15.57 23.00 15.82 17.37 12.60 15.10 23.43 13.35 72.55 13.00 24.54 4.42 35.03 22.86 8.57 10.16 21 I3 Intron 0 3.84 7.10 1.46 5.42 8.28 4.67 4.27 5.00 8.32 6.05 7.05 17.24 5.52 9.79 1.70 8.63 5.82 2.34 3.35 14.39 4.15 5.79 3.82 22 I3_AR1 ActiveIntronRegion 0 4.04 9.75 0.03 7.59 8.12 1.49 4.69 8.01 10.95 8.38 7.78 22.55 8.71 13.54 4.00 10.89 6.66 1.83 1.52 16.75 3.56 8.68 2.74 23 I3_SR2 SilentIntronRegion 0 4.30 7.61 1.09 5.69 9.23 7.42 4.44 5.46 8.28 5.75 7.27 17.59 4.72 9.55 1.03 9.27 5.66 2.25 4.35 13.72 5.06 5.56 3.73 24 E4_Aa NovelBoundary 0 3.26 2.96 0.00 2.63 3.99 7.21 11.97 2.18 0.00 1.45 0.00 0.00 0.00 14.60 0.00 16.49 4.77 0.00 0.00 5.43 0.00 9.06 0.00 25 E4_Ab NovelBoundary 0 10.59 0.00 0.00 10.45 7.64 5.68 1.85 4.03 1.10 2.58 9.84 6.30 0.00 7.06 0.00 6.66 3.74 4.10 0.00 9.01 0.00 0.00 0.00 26 ER4a ExonRegion 0 0.42 5.29 1.23 1.36 1.61 1.47 2.91 3.46 4.20 3.90 4.25 4.33 1.88 5.52 2.32 14.86 2.64 6.28 0.64 5.96 8.37 2.50 4.70 27 ER4b ExonRegion 0 0.88 1.10 0.11 0.31 0.73 0.53 1.09 0.40 0.72 0.39 0.97 0.77 0.06 1.78 0.54 2.91 1.01 0.90 0.28 1.27 0.89 0.52 0.61 28 E4_Da KnownBoundary 0 0.00 0.00 1.77 1.70 8.32 0.00 0.00 2.22 1.77 1.50 0.00 11.85 0.00 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.76 0.00 29 ER4c ExonRegion 0 0.14 0.00 0.48 0.53 0.00 0.00 0.09 0.34 0.73 0.45 0.00 0.20 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00