Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MBNL2 Gene 0 77.72 135.34 87.57 117.87 164.87 179.21 87.96 95.82 192.37 111.15 25.39 156.52 211.74 68.28 38.57 23.68 44.63 18.55 21.70 23.85 38.53 148.35 47.32 2 397601 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 397597 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 376685 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 343600 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 445661 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 376673 Transcript 0 0.00 0.00 0.00 1.76 0.00 0.00 0.00 0.00 0.00 3.20 4.47 0.00 0.00 2.30 4.45 4.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 376679 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 469707 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 345429 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 449284 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E2_Aa NovelBoundary 0 0.00 24.40 0.00 0.00 4.24 50.08 14.18 0.00 1.71 0.00 24.43 6.00 5.68 34.32 0.00 46.65 29.92 2.53 28.33 12.40 23.17 10.59 47.21 15 ER2a ExonRegion 1 20.56 39.45 2.42 2.14 22.09 36.15 21.75 1.53 9.00 6.29 0.99 0.00 2.55 25.75 0.83 13.33 11.32 2.27 10.38 4.98 15.05 19.29 18.71 16 E2_Ab KnownBoundary 0 0.00 2.96 0.00 3.80 8.66 5.79 0.00 4.97 8.45 6.37 2.47 0.00 0.00 0.00 4.70 3.59 13.09 4.85 4.80 2.68 10.75 5.76 3.59 17 E2_Ac KnownBoundary 1 40.16 93.01 7.18 5.63 40.75 56.84 52.69 3.70 12.47 13.91 4.21 0.00 0.00 36.08 0.00 15.21 11.22 6.51 8.85 7.29 27.31 33.13 39.95 18 ER2b ExonRegion 1 126.99 262.33 20.83 16.35 128.44 238.39 185.35 19.01 88.93 42.44 3.87 0.00 9.38 108.82 11.61 38.64 66.02 12.93 38.22 19.15 99.17 97.93 96.91 19 ER2c ExonRegion 1 52.91 97.18 22.60 18.77 50.52 96.74 75.27 31.84 107.24 62.57 23.83 33.31 42.45 57.31 8.01 26.31 63.73 14.40 16.34 21.57 84.15 76.13 48.47 20 E2_Da NovelBoundary 0 2.82 2.89 10.29 4.73 0.00 0.00 0.00 15.07 19.04 21.57 0.00 0.00 0.00 7.06 4.45 15.72 0.00 0.00 30.78 2.88 0.00 0.00 16.39 21 E2a_E3a KnownJunction 1 11.04 31.38 32.02 41.32 24.19 32.14 14.00 59.64 189.78 102.13 21.01 109.24 161.84 214.20 15.45 66.31 78.82 32.46 36.05 44.17 93.10 227.73 82.97 22 I2_AR1 ActiveIntronRegion 0 40.43 26.63 46.16 19.08 28.50 3.40 13.61 20.56 24.75 16.89 0.67 6.03 5.44 0.80 5.49 4.04 1.71 3.04 7.79 3.26 0.11 0.93 1.96 23 I2_SR1 SilentIntronRegion 0 29.48 28.40 47.22 18.54 22.41 2.77 13.59 15.85 18.61 14.52 0.58 6.64 7.51 0.98 4.94 3.59 2.74 2.22 4.69 3.53 0.67 0.93 2.22 24 I2_AR2 ActiveIntronRegion 0 23.83 11.35 16.40 5.33 13.12 2.81 8.58 8.61 10.58 6.26 1.23 4.11 3.36 0.39 5.19 2.92 3.24 0.00 0.49 0.00 0.00 0.00 3.40 25 I2_AR3 ActiveIntronRegion 0 66.89 28.25 19.31 13.20 33.24 2.37 14.83 14.15 17.18 13.03 0.23 2.59 7.83 0.49 4.96 3.33 3.70 2.25 4.76 2.24 0.65 0.60 2.19 26 I2_AR5 ActiveIntronRegion 0 2.12 11.72 24.29 8.74 17.79 9.17 14.41 13.73 11.33 5.06 3.87 4.33 3.03 2.77 9.73 1.75 3.50 0.00 0.37 0.00 0.00 0.00 2.94 27 I2_AR6 ActiveIntronRegion 0 11.22 14.44 24.88 7.22 13.65 9.17 16.81 12.10 11.36 2.29 2.71 0.87 6.10 2.44 5.80 8.02 3.30 0.00 6.37 0.00 0.00 0.00 2.94 28 I2_AR7 ActiveIntronRegion 0 14.82 10.96 23.08 5.60 10.41 10.39 19.71 9.99 12.28 1.78 1.50 5.53 14.07 0.90 0.00 9.25 3.30 0.00 6.37 0.00 0.00 0.00 0.00 29 ER3a ExonRegion 1 39.19 73.74 41.55 47.14 80.52 134.55 71.96 61.94 190.39 88.44 47.32 236.35 333.84 106.47 20.60 36.40 85.98 32.69 29.42 28.07 66.69 167.18 81.72 30 E3a_E4a KnownJunction 1 41.41 62.55 15.05 53.61 108.23 129.93 61.92 80.63 228.21 95.28 29.53 150.05 324.00 110.66 18.91 49.30 96.31 39.17 29.27 39.31 120.90 192.40 105.68 31 I3_SR1 SilentIntronRegion 0 20.87 12.15 21.41 10.81 18.36 3.74 12.94 9.96 11.18 6.91 0.81 13.63 12.71 1.98 2.32 2.57 3.48 0.63 2.71 1.43 0.33 0.39 0.88 32 I3_AR1 ActiveIntronRegion 0 33.19 20.09 46.05 14.02 28.50 2.77 16.92 11.17 15.87 7.86 0.84 13.84 6.99 0.32 4.43 4.34 4.45 1.08 2.24 4.00 1.13 0.85 0.94 33 I3_SR2 SilentIntronRegion 0 16.14 19.34 18.20 7.18 15.61 2.89 16.83 9.64 12.49 7.40 0.84 14.02 13.37 1.01 2.81 1.36 1.21 1.61 1.01 2.46 0.29 0.66 1.29 34 I3_SR3 SilentIntronRegion 0 18.79 9.88 6.58 7.12 11.73 2.33 12.38 7.08 11.42 7.02 0.28 7.72 10.18 0.59 3.37 2.38 2.98 1.72 3.49 2.14 1.11 0.37 2.12 35 I3_AR3 ActiveIntronRegion 0 26.00 14.46 9.80 11.21 24.53 2.34 15.07 15.60 15.64 8.66 1.22 11.49 6.69 0.84 4.00 3.27 2.78 1.58 1.44 2.66 1.16 0.38 2.97 36 I3_AR10 ActiveIntronRegion 0 38.65 9.38 5.54 8.29 9.85 1.40 8.27 6.78 5.60 4.92 0.19 9.21 3.49 0.17 5.29 1.51 0.42 0.00 1.42 1.29 0.00 0.00 0.37 37 I3_SR8 SilentIntronRegion 0 32.02 5.81 2.90 5.37 6.81 0.97 5.15 4.20 2.92 2.71 0.00 4.39 2.45 0.28 2.11 0.18 1.76 0.58 2.36 0.23 0.47 0.00 0.00 38 ER4a ExonRegion 1 30.03 62.95 33.49 50.05 77.66 166.34 66.13 70.96 204.33 89.54 45.37 219.78 340.58 135.13 33.50 43.32 98.11 41.67 28.11 34.79 129.97 194.11 92.90 39 E4a_E5a KnownJunction 1 35.78 61.63 36.16 39.12 112.31 134.07 71.19 71.10 153.15 58.08 40.96 167.30 243.65 63.51 10.75 33.50 66.76 28.44 21.27 33.11 114.78 139.86 45.75 40 E4a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER5a ExonRegion 0 32.99 49.17 38.15 44.63 52.53 117.62 48.20 65.88 151.52 73.28 34.90 179.96 242.95 106.81 28.90 32.55 80.26 36.03 21.11 33.51 110.06 148.92 82.26 42 E5a_E6a KnownJunction 1 19.11 44.99 33.17 45.62 41.00 164.79 30.96 48.80 106.51 68.44 20.37 134.59 200.64 101.42 19.90 35.80 74.61 45.10 17.22 27.23 102.80 77.22 67.44 43 ER6a ExonRegion 0 18.45 44.59 40.31 46.00 32.58 106.08 35.29 52.52 107.66 66.20 21.19 76.57 153.13 72.42 23.38 38.67 53.28 39.62 20.00 22.45 64.81 91.20 75.60 44 E6_Da KnownBoundary 1 68.09 43.94 41.72 34.46 22.58 84.72 22.74 57.91 119.56 57.89 33.32 76.52 90.09 66.22 25.22 26.06 42.17 29.64 22.12 42.89 95.14 112.91 101.75 45 E6a_E6b KnownJunction 0 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 ER6b ExonRegion 1 26.85 30.24 23.73 24.64 4.22 50.48 22.47 28.84 77.65 34.20 20.30 50.36 90.47 54.07 22.75 12.12 40.65 13.42 15.34 25.70 64.66 76.43 61.21 47 E6c_E7a KnownJunction 0 0.00 34.80 17.56 16.58 20.88 59.34 11.53 15.90 24.42 28.15 0.00 0.00 0.00 2.94 0.00 0.00 4.77 16.17 14.68 19.43 3.15 12.06 0.00 48 E6c_E8a KnownJunction 1 26.30 14.14 3.05 22.74 10.53 28.34 11.70 3.74 37.85 8.97 21.22 37.21 142.20 57.80 18.05 27.09 42.17 5.68 3.67 0.00 34.47 96.75 54.55 49 ER6c ExonRegion 1 17.90 31.27 12.76 23.68 12.71 59.75 21.74 17.00 53.57 24.99 17.88 24.53 120.38 49.81 11.73 18.20 36.58 9.24 9.16 8.16 38.38 79.52 43.07 50 ER6d ExonRegion 1 16.93 32.54 8.58 23.17 24.08 78.85 20.52 14.69 58.67 24.66 23.19 36.80 140.70 52.78 13.06 23.78 33.01 19.40 22.30 12.77 36.36 95.84 44.05 51 I6_SR2 SilentIntronRegion 0 37.38 24.76 6.88 17.70 10.87 8.41 18.26 5.71 20.66 12.52 1.86 5.70 9.97 0.47 0.23 0.30 5.80 7.22 4.70 8.45 4.05 5.40 3.64 52 E7_Aa NovelBoundary 0 3.78 2.83 4.49 11.29 4.16 5.22 18.99 8.75 30.44 2.23 0.00 12.60 19.97 0.00 0.00 0.00 0.00 14.92 0.00 11.12 3.15 0.00 0.00 53 ER7a ExonRegion 0 1.10 39.35 10.94 15.37 17.39 50.06 19.91 20.36 46.34 38.49 4.44 7.94 10.60 4.21 2.69 0.00 1.83 28.95 30.02 19.70 9.47 7.56 4.02 54 E7_Da NovelBoundary 0 0.00 0.00 3.13 0.00 0.00 0.00 6.76 2.42 9.55 1.10 0.00 6.15 0.00 0.00 0.00 0.00 4.77 4.97 0.00 3.26 14.33 7.29 10.24 55 E7a_E8a KnownJunction 1 3.78 64.07 15.79 23.11 17.40 59.17 26.63 37.75 90.77 65.30 7.84 13.65 27.27 4.71 0.00 0.00 4.77 45.23 29.65 28.89 5.44 3.12 4.35 56 ER8a ExonRegion 1 26.15 53.77 26.00 40.45 50.94 123.86 43.98 52.72 152.40 81.35 30.73 84.82 158.64 90.76 20.29 37.13 60.38 54.75 34.11 30.04 99.00 100.74 66.68 57 E8a_E9a KnownJunction 0 0.00 19.27 4.79 14.35 12.22 140.66 13.82 17.29 61.31 48.06 2.26 0.00 13.15 7.95 4.45 4.36 9.54 20.27 0.00 6.07 0.00 0.00 0.00 58 E8a_E10a KnownJunction 1 3.04 25.06 5.74 18.15 15.28 8.35 18.77 6.00 18.32 10.02 5.21 12.15 32.79 4.77 4.45 6.32 12.81 18.53 23.15 17.58 17.36 39.19 44.13 59 E8a_E12a KnownJunction 1 5.78 0.00 4.08 8.86 16.89 14.99 16.56 20.37 25.90 12.71 9.58 18.16 69.31 59.86 10.75 7.43 35.90 2.57 0.00 3.26 25.45 40.35 3.59 60 I8_SR1 SilentIntronRegion 0 7.32 8.44 7.50 12.26 13.95 7.54 19.90 18.50 25.20 13.35 0.92 9.69 15.88 0.90 2.16 1.54 5.14 4.18 5.86 5.52 1.57 3.24 3.37 61 I8 Intron 0 5.61 14.44 10.63 15.03 16.26 17.42 21.98 21.05 41.34 22.89 1.65 9.35 11.78 1.42 1.77 3.18 7.06 6.76 5.05 8.65 3.96 7.49 4.27 62 I8_SR1 SilentIntronRegion 0 5.62 14.46 10.63 15.05 16.27 17.43 21.99 21.07 41.38 22.91 1.66 9.36 11.79 1.42 1.77 3.18 7.07 6.77 5.05 8.66 3.96 7.49 4.28 63 E9_Aa NovelBoundary 0 18.15 17.83 14.90 5.29 41.26 47.87 42.40 11.91 38.11 16.25 2.11 6.75 13.31 4.77 0.00 4.10 13.00 6.22 17.98 8.56 0.00 6.06 4.35 64 ER9a ExonRegion 0 0.00 21.97 4.46 16.05 13.38 104.78 13.09 15.41 57.23 41.32 2.79 0.72 14.33 4.56 4.35 4.87 4.86 18.32 0.35 8.81 0.00 0.06 0.08 65 E9a_E10a KnownJunction 1 0.00 27.82 2.93 20.54 12.82 97.84 18.59 8.63 40.45 18.62 0.00 0.00 20.13 2.24 0.00 0.00 0.00 11.15 0.00 8.56 0.00 0.00 0.00 66 E9a_E12a KnownJunction 0 0.00 0.00 0.00 1.76 0.00 0.00 0.00 0.00 0.00 3.20 4.47 0.00 0.00 2.30 4.45 4.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 I9 Intron 0 6.26 20.71 9.48 22.87 23.73 29.74 24.69 21.40 49.39 26.08 0.46 10.65 19.70 1.32 1.69 1.07 6.06 4.85 6.23 9.94 2.29 5.66 2.93 68 I9_SR1 SilentIntronRegion 0 4.80 20.41 6.35 15.75 16.40 23.42 24.55 14.62 35.36 18.74 1.23 7.26 11.35 0.85 2.17 1.02 2.60 3.70 3.41 7.44 0.00 4.13 2.38 69 I9_AR1 ActiveIntronRegion 0 5.23 18.24 9.70 25.02 23.52 29.50 25.96 21.95 47.83 24.76 0.14 13.37 21.28 0.92 1.59 1.16 7.09 3.18 4.46 8.33 1.95 5.82 2.86 70 I9_SR2 SilentIntronRegion 0 9.49 26.22 11.31 23.65 29.59 34.97 22.28 25.26 63.10 34.27 0.59 7.47 22.54 2.51 1.56 0.91 6.44 9.22 12.03 15.17 4.66 6.45 3.51 71 E10_Aa NovelBoundary 0 14.08 31.84 10.73 28.37 23.43 28.17 25.04 18.15 41.98 20.44 4.69 12.30 33.60 0.00 0.00 7.43 3.55 22.14 9.60 9.27 5.75 0.00 4.27 72 ER10a ExonRegion 0 13.48 68.37 27.94 68.30 40.70 82.25 42.52 34.30 113.93 52.70 6.25 24.25 65.96 13.03 10.69 6.04 11.57 24.51 23.57 40.25 23.87 47.26 27.88 73 E10a_E12a KnownJunction 1 6.89 60.78 41.60 103.62 46.01 90.80 39.66 68.96 188.11 78.28 11.53 18.91 40.74 16.30 20.64 4.36 17.02 23.26 22.49 38.29 22.55 39.43 19.63 74 ER11a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75 ER12a ExonRegion 0 43.34 115.13 66.66 144.70 144.40 211.14 85.06 86.22 261.00 125.65 31.77 140.71 285.37 80.50 31.64 28.31 52.16 23.57 21.74 33.77 40.86 153.02 40.86 76 E12_Da KnownBoundary 0 67.72 207.27 98.67 124.46 165.79 244.80 83.78 83.05 237.53 114.41 20.90 164.60 287.64 54.56 27.20 8.29 25.90 16.46 9.13 29.15 5.75 174.15 30.82 77 ER12b ExonRegion 0 64.73 137.87 86.58 140.14 183.31 269.56 120.00 84.30 227.99 117.63 35.32 223.60 266.37 77.16 40.09 29.06 48.94 15.77 34.17 24.51 31.25 155.60 55.65 78 E12_Db KnownBoundary 1 52.31 130.50 83.14 140.21 152.38 208.18 111.82 87.49 204.34 142.26 39.64 167.45 204.69 81.46 16.94 41.87 77.70 19.15 32.94 13.68 35.09 118.24 56.77 79 ER12c ExonRegion 0 132.26 212.83 146.13 188.25 272.90 225.53 116.68 145.33 227.25 149.34 16.26 160.99 192.83 51.73 59.00 16.06 23.35 6.61 17.62 20.62 9.08 175.40 28.96 80 ER12d ExonRegion 0 2.12 0.00 0.00 0.00 10.70 0.00 2.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81 IG7_SR8 SilentIntergenicRegion 0 3.92 4.07 3.25 4.51 5.49 4.13 4.52 2.40 4.40 3.13 5.87 16.63 3.01 5.57 2.94 2.92 5.33 1.24 1.35 12.64 0.52 1.95 0.46