Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TBC1D4 Gene 0 156.97 69.28 30.19 33.67 76.79 41.58 37.02 45.05 26.93 34.20 116.70 84.52 67.59 140.62 63.72 115.63 99.36 33.32 20.92 54.29 24.25 53.31 20.96 2 425511 Transcript 0 3.78 3.16 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 6.06 0.00 4.49 0.00 0.00 0.00 0.00 2.69 0.00 3 377625 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 431480 Transcript 0 12.67 38.32 7.99 18.85 4.01 22.97 11.15 17.56 11.94 30.74 16.19 20.02 11.14 21.52 5.08 24.89 16.09 40.35 34.12 65.23 1.93 5.47 3.30 5 377636 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 6 413735 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 488955 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 493487 Transcript 0 0.00 0.00 0.00 1.24 2.53 0.00 1.05 0.00 0.94 1.02 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 1.00 0.67 0.00 0.00 0.92 9 478591 Transcript 0 0.79 1.26 0.90 1.01 0.00 0.68 1.31 0.32 0.46 0.00 0.24 0.00 0.00 0.33 0.75 0.37 0.00 0.66 0.00 1.31 0.00 0.26 0.00 10 ER1a ExonRegion 0 0.26 2.60 3.47 1.52 0.88 3.73 1.26 4.12 5.20 8.06 42.65 9.56 9.22 70.65 14.74 48.16 47.36 17.73 6.82 17.28 17.59 10.55 8.30 11 E1a_E2a KnownJunction 0 0.00 6.38 7.27 4.06 4.33 10.05 3.89 9.28 14.67 16.82 105.82 60.17 41.39 99.59 22.75 90.32 102.76 33.66 8.28 43.21 28.42 19.29 19.21 12 I1_AR14 ActiveIntronRegion 1 0.00 0.58 1.05 1.22 0.00 0.00 0.00 0.00 0.00 1.15 0.00 17.63 4.19 0.00 2.69 0.00 2.36 0.00 0.00 0.00 0.00 0.00 0.00 13 ER2a ExonRegion 1 2.60 10.06 6.36 5.21 2.32 10.79 4.96 7.10 9.49 17.32 81.16 31.30 27.30 140.95 23.73 90.89 94.88 39.39 11.35 53.42 34.37 25.13 19.79 14 E2a_E3a KnownJunction 1 3.48 27.17 3.19 9.56 7.81 28.56 10.38 18.28 9.64 29.31 146.83 49.07 62.66 176.11 27.81 158.51 73.12 34.78 8.85 71.14 51.15 41.03 39.61 15 ER3a ExonRegion 1 1.29 23.18 5.21 6.91 3.00 29.36 16.93 13.71 12.83 30.75 125.72 60.28 53.99 195.33 29.69 182.26 118.72 37.45 22.44 64.87 44.83 59.73 31.45 16 E3a_E4a KnownJunction 1 7.33 26.18 14.10 3.80 3.99 35.09 24.69 10.60 18.17 37.23 127.24 87.18 61.85 212.73 25.22 168.33 120.90 33.08 22.31 71.59 28.48 58.85 35.94 17 ER4a ExonRegion 1 4.15 26.82 11.85 5.96 4.15 25.45 13.81 18.03 18.51 29.20 120.15 75.29 42.57 187.89 21.22 179.88 132.92 41.06 24.94 58.20 48.92 37.66 28.56 18 E4a_E5a KnownJunction 0 12.30 40.52 8.60 9.82 11.21 7.15 15.41 35.24 13.74 33.15 106.24 89.73 52.43 181.88 44.87 240.45 149.51 32.62 22.21 65.32 46.27 36.25 32.95 19 ER5a ExonRegion 1 4.44 19.75 10.16 5.97 8.71 25.94 7.21 20.78 13.55 29.04 88.07 77.54 57.37 183.49 26.96 170.06 123.40 46.21 30.39 57.11 44.59 45.32 25.92 20 E5a_E6a KnownJunction 1 3.78 15.46 20.67 9.52 0.00 29.30 14.31 27.23 13.19 34.49 110.03 95.28 42.21 223.85 22.62 143.38 211.13 76.32 28.33 83.67 43.37 43.54 15.11 21 ER6a ExonRegion 1 5.46 14.41 13.80 6.86 10.28 25.93 21.93 18.13 11.12 26.32 102.27 91.15 47.15 199.34 30.34 142.61 146.05 57.12 36.55 72.34 51.85 47.59 20.71 22 E6_Ab KnownBoundary 1 6.52 15.19 12.03 8.39 15.20 39.24 40.06 17.13 13.66 26.57 124.66 18.76 80.19 149.86 48.71 127.83 107.62 54.10 15.72 76.57 61.96 53.52 30.99 23 ER6b ExonRegion 1 4.96 15.57 16.00 6.19 6.50 34.06 21.71 21.53 12.81 27.76 131.99 34.39 50.52 173.64 25.20 130.52 94.12 55.59 12.20 63.71 47.35 37.15 35.74 24 E6a_E7a KnownJunction 1 7.11 22.50 22.44 6.16 3.82 39.47 16.91 28.22 16.26 34.54 129.61 30.61 33.28 189.18 13.35 115.78 75.92 52.60 12.14 65.71 35.40 30.86 39.10 25 E6a_E8a NovelJunction 0 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 21.54 4.45 11.79 12.53 1.62 0.00 0.00 0.00 3.12 0.00 26 ER7a ExonRegion 1 4.33 18.54 14.03 11.30 8.90 31.90 16.03 18.50 21.28 28.11 119.84 85.89 76.65 169.82 23.71 153.83 148.21 70.40 30.65 72.32 35.10 37.94 30.19 27 E7a_E8a KnownJunction 1 11.11 20.98 12.15 13.45 11.29 34.24 15.68 13.35 19.39 32.10 125.40 103.53 60.06 182.24 28.56 163.89 128.85 47.22 13.65 72.80 30.33 55.84 19.63 28 ER8a ExonRegion 1 3.97 21.45 19.11 10.65 12.31 27.02 10.28 16.98 27.63 40.13 153.23 101.89 57.49 203.96 43.06 185.78 131.79 61.30 19.46 68.97 41.71 57.87 27.24 29 E8a_E9a KnownJunction 1 0.00 30.26 18.92 17.21 0.00 24.19 3.97 16.96 15.94 23.45 156.14 162.80 67.20 189.83 29.92 149.02 150.82 76.56 21.37 83.09 59.49 61.60 19.72 30 ER9a ExonRegion 1 6.04 18.22 14.12 11.05 4.50 24.96 9.57 17.22 19.84 36.98 130.84 121.17 55.40 168.89 30.64 126.53 137.19 60.66 13.85 59.43 54.68 33.17 20.36 31 E9a_E10a KnownJunction 0 3.56 20.98 12.65 11.92 4.33 23.23 16.74 21.48 22.89 35.83 103.87 95.58 53.08 159.75 40.18 150.13 96.40 51.24 4.42 66.86 41.39 30.00 28.34 32 I9_AR1 ActiveIntronRegion 0 40.91 0.77 1.73 1.16 21.82 3.49 4.13 3.41 1.87 1.62 0.37 0.00 2.94 2.22 0.39 2.15 1.61 0.00 1.21 3.64 0.00 1.19 0.00 33 E10_Aa NovelBoundary 0 65.94 5.00 1.18 1.47 31.92 16.58 8.88 4.76 1.79 0.00 0.00 0.00 0.00 2.47 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 34 ER10a ExonRegion 1 64.38 25.64 15.81 14.76 14.61 23.64 18.19 17.38 22.14 29.02 98.08 73.30 46.60 192.54 29.93 153.88 110.50 59.19 21.51 77.27 48.89 41.31 28.86 35 E10_Ab KnownBoundary 1 67.05 36.31 11.68 15.12 37.35 21.58 45.00 25.10 17.91 18.56 101.24 38.41 72.88 152.86 22.25 148.51 125.85 72.00 26.07 57.65 54.12 33.13 31.93 36 ER10b ExonRegion 1 58.62 32.46 6.36 15.66 29.94 27.16 28.60 11.19 15.64 19.74 102.88 40.35 37.96 153.00 21.29 173.00 126.31 74.50 16.71 66.24 37.01 43.48 24.16 37 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 E10a_E14a KnownJunction 1 45.05 39.93 5.65 18.48 26.23 28.73 17.53 6.16 15.57 20.52 108.13 35.71 41.72 173.88 23.12 155.34 122.11 58.57 20.89 63.09 41.21 40.23 25.78 39 ER11a ExonRegion 0 0.65 0.63 1.13 0.65 0.88 1.16 1.23 2.36 2.88 0.53 1.97 2.20 6.20 0.85 0.00 2.76 6.16 2.55 1.97 3.97 0.00 0.64 0.94 40 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 E11a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 E12a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER12a ExonRegion 0 0.18 0.00 0.00 0.00 0.00 0.31 0.11 0.00 0.10 0.00 0.00 0.00 1.37 0.27 0.00 0.37 0.28 0.08 0.27 0.27 0.18 0.00 0.00 44 ER13a ExonRegion 0 0.00 0.00 0.00 1.11 5.05 0.00 0.20 0.00 0.38 0.93 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 2.01 1.34 0.00 0.00 1.85 45 E13a_E14a KnownJunction 0 0.00 0.00 0.00 1.37 0.00 0.00 1.90 0.00 1.50 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 ER14a ExonRegion 1 38.64 25.29 14.56 18.56 23.01 28.73 18.87 13.72 31.24 23.96 98.58 51.66 19.96 184.98 31.62 129.78 125.83 62.11 23.20 75.58 36.77 39.18 26.88 47 E14_Da KnownBoundary 1 75.64 36.77 9.55 12.32 24.87 23.85 40.45 8.71 30.76 18.78 129.56 41.86 12.99 182.35 44.50 157.31 148.01 58.62 20.61 50.37 38.05 56.58 27.23 48 ER14b ExonRegion 1 51.04 27.87 8.66 14.87 16.85 30.30 20.79 8.21 25.63 18.35 113.56 48.61 34.00 168.87 22.16 128.68 121.91 54.97 20.05 45.65 29.50 42.24 23.43 49 E14b_E15a KnownJunction 1 85.27 26.90 11.44 18.51 16.64 32.99 14.88 9.49 24.74 18.00 120.82 86.88 33.93 132.97 14.46 131.67 72.93 55.30 20.61 49.54 17.36 27.98 19.89 50 I14 Intron 0 34.99 13.32 3.05 6.69 27.20 3.89 11.90 5.70 5.82 2.93 10.91 9.57 13.45 29.83 7.99 25.64 16.55 3.82 2.59 13.46 5.57 16.66 5.44 51 I14_AR2 ActiveIntronRegion 0 56.88 20.26 5.27 9.58 39.29 3.85 16.66 7.43 7.00 2.24 13.18 17.56 29.01 33.64 12.40 24.55 16.45 3.86 0.84 16.18 4.91 17.21 4.24 52 I14_SR2 SilentIntronRegion 0 29.29 9.88 2.83 6.87 28.05 4.07 12.32 7.99 6.68 5.43 11.69 3.06 6.79 32.16 8.00 35.19 19.94 4.16 2.04 13.96 8.26 19.66 5.72 53 I14_AR4 ActiveIntronRegion 0 25.98 15.41 0.89 7.12 26.65 8.08 11.08 2.49 7.45 4.15 12.76 4.29 2.40 33.01 8.10 25.20 20.46 3.62 8.74 9.92 7.21 21.06 5.41 54 E15_Aa NovelBoundary 0 78.68 12.76 3.16 13.85 40.66 14.48 18.68 13.35 5.15 2.47 10.27 6.30 13.64 21.66 0.00 29.65 32.35 8.71 0.00 6.46 0.00 23.88 0.00 55 ER15a ExonRegion 0 73.44 32.15 9.29 13.14 55.53 33.29 23.57 20.43 25.76 23.17 85.77 57.65 32.35 159.46 35.83 115.25 91.41 34.93 19.33 44.99 23.58 40.78 17.75 56 E15_Da KnownBoundary 1 208.11 60.84 7.16 20.01 130.31 62.41 45.40 33.15 22.97 30.09 116.40 54.62 58.44 191.77 31.28 163.55 116.69 48.96 51.20 49.92 27.00 67.97 41.32 57 ER15b ExonRegion 0 113.38 39.64 12.78 23.84 80.42 41.90 42.01 40.78 26.26 34.76 136.76 96.18 84.42 181.22 39.00 151.64 134.80 44.98 32.33 64.86 14.98 73.53 24.69 58 E15b_E16a KnownJunction 0 3.11 41.05 7.10 17.25 0.00 13.86 7.73 16.10 9.37 24.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.37 38.78 67.69 0.00 0.00 0.00 59 E15b_E16b KnownJunction 1 117.21 3.35 11.41 20.14 22.16 4.20 22.52 21.93 18.37 12.76 121.93 171.21 21.91 159.22 55.75 180.98 109.30 9.91 4.80 13.55 20.70 47.03 27.74 60 E15b_E18a KnownJunction 0 3.78 3.16 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 6.06 0.00 4.49 0.00 0.00 0.00 0.00 2.69 0.00 61 I15 Intron 0 5.12 6.45 0.96 3.24 5.27 4.75 5.41 3.62 3.00 1.99 6.05 16.31 29.16 14.29 2.70 6.36 3.90 2.06 1.73 4.59 1.36 9.57 2.42 62 I15_SR2 SilentIntronRegion 0 1.21 7.86 1.01 3.53 3.98 5.72 5.46 4.86 4.05 2.53 3.24 20.98 23.06 11.13 1.41 1.79 0.43 0.86 0.76 4.06 0.50 7.29 2.12 63 I15_AR1 ActiveIntronRegion 0 2.02 7.18 0.65 1.79 2.32 2.83 4.75 1.91 1.30 1.12 2.06 11.53 19.55 7.07 0.54 4.61 1.96 0.85 0.29 4.09 0.00 2.68 0.00 64 I15_SR3 SilentIntronRegion 0 6.89 5.91 0.91 3.56 6.10 4.47 5.59 3.88 3.03 2.08 7.71 16.53 34.15 17.06 3.62 8.04 5.42 2.60 2.26 4.80 2.00 11.87 2.84 65 ER16a ExonRegion 0 22.22 35.59 8.88 20.44 8.03 32.09 14.56 19.01 14.51 36.99 32.38 40.05 22.28 43.04 10.15 49.78 32.18 38.34 29.46 62.77 3.86 10.94 6.61 66 ER16b ExonRegion 1 81.70 47.59 18.38 31.35 29.43 34.11 31.25 38.03 30.63 45.88 128.73 154.99 51.59 159.16 42.94 171.79 124.77 50.63 33.76 77.45 15.43 50.00 25.26 67 ER16c ExonRegion 0 112.65 71.43 22.44 33.45 72.73 46.05 38.52 58.35 48.60 51.66 175.05 145.36 125.07 172.24 45.81 172.34 178.83 38.61 29.77 84.29 14.63 80.94 29.56 68 E16b_E18a KnownJunction 0 212.04 115.70 34.21 63.10 100.51 16.81 49.06 95.00 62.99 62.86 156.36 198.81 143.01 255.87 73.92 191.23 182.42 39.59 45.27 99.84 25.76 144.02 44.30 69 ER17a ExonRegion 0 1.57 2.52 1.81 2.01 0.00 1.36 2.62 0.64 0.91 0.00 0.48 0.00 0.00 0.66 1.51 0.74 0.00 1.32 0.00 2.61 0.00 0.52 0.00 70 E17a_E18a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71 ER18a ExonRegion 0 157.35 85.74 29.89 41.68 77.09 60.60 52.68 65.42 50.98 55.12 147.95 154.69 104.89 223.98 68.37 191.67 167.35 59.06 42.27 97.50 41.88 92.70 32.88 72 E18a_E19a KnownJunction 1 157.66 114.72 29.24 34.39 118.00 82.00 87.57 53.31 51.62 53.32 176.41 75.77 93.99 237.21 32.51 239.00 164.00 74.82 49.22 90.00 39.78 150.45 34.32 73 ER19a ExonRegion 0 112.05 81.73 21.01 31.97 83.53 53.25 44.50 55.05 43.30 40.59 194.79 99.77 110.57 249.62 66.21 187.77 183.68 87.06 46.53 96.73 51.80 84.34 33.03 74 E19a_E20a KnownJunction 1 158.99 67.16 11.77 26.27 63.84 26.29 43.54 51.47 29.08 31.89 167.36 99.03 120.93 217.73 44.63 160.04 158.67 78.76 24.85 90.89 69.75 74.22 22.71 75 ER20a ExonRegion 0 193.48 80.80 24.85 40.47 120.39 85.27 51.81 62.64 42.65 48.35 191.55 134.91 142.24 271.82 67.25 259.47 176.14 74.39 36.17 94.05 41.46 99.31 44.64 76 E20_Da NovelBoundary 0 86.31 37.95 11.06 28.80 62.82 38.61 30.21 22.14 19.15 22.38 86.13 99.93 64.28 66.63 24.48 47.85 60.12 15.84 11.77 24.86 12.36 33.49 9.82 77 E20b_E21a KnownJunction 0 167.88 59.33 23.98 42.85 128.95 56.79 40.81 35.65 36.34 35.00 146.41 139.85 148.53 216.26 103.10 126.21 138.29 30.43 22.21 61.04 19.95 55.17 31.58 78 ER20b ExonRegion 0 149.12 61.01 25.18 39.15 118.22 59.18 42.25 37.55 36.49 34.93 164.30 167.27 142.41 200.95 71.48 112.40 138.34 32.76 28.38 59.96 24.24 54.36 19.49 79 ER21a ExonRegion 0 178.41 88.22 32.08 38.72 140.43 69.39 58.75 45.75 43.89 41.96 167.21 153.80 156.73 183.95 54.34 140.37 134.09 31.30 18.79 62.35 20.62 59.96 28.78 80 E21a_E22a KnownJunction 0 156.47 106.82 38.97 39.56 166.55 135.04 54.50 52.53 35.91 32.58 166.99 214.42 202.58 140.03 52.54 102.71 97.43 24.29 32.47 42.70 20.45 41.88 3.93 81 ER22a ExonRegion 0 138.33 90.95 33.36 41.72 100.71 76.83 43.35 63.46 37.19 41.13 194.19 163.91 171.68 180.10 61.27 171.33 128.94 36.23 29.91 59.95 21.40 63.79 33.40 82 E22a_E23a KnownJunction 0 160.47 76.83 32.67 48.98 95.50 45.09 44.60 78.41 38.17 53.00 182.89 161.75 77.11 156.57 62.67 173.54 143.06 57.83 63.72 45.70 19.65 59.83 47.29 83 ER23a ExonRegion 0 358.51 140.60 62.94 69.22 159.92 67.92 70.65 87.10 39.67 52.27 149.36 121.87 91.54 137.01 124.16 116.12 96.59 22.08 24.54 59.44 16.20 78.81 21.35 84 ER23b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00