Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GPR18 Gene 0 52.56 2.34 1.32 3.42 20.03 2.55 11.11 5.58 2.85 2.51 21.75 33.59 32.89 36.40 36.24 15.97 6.88 0.98 1.28 6.26 0.59 0.11 1.96 2 340807 Transcript 0 2.73 1.18 1.72 0.48 2.51 0.02 3.28 1.16 1.90 1.59 1.30 5.40 5.57 0.91 1.81 4.14 2.66 0.89 0.71 2.82 0.24 0.00 1.82 3 397473 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 397470 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 416594 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.06 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.02 0.00 0.00 0.00 7 E1_Da NovelBoundary 0 51.19 11.97 13.57 18.68 3.99 4.66 3.84 9.36 5.82 5.02 5.11 12.60 20.29 2.12 0.00 7.18 9.07 12.60 0.00 6.20 11.12 5.08 8.02 8 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 Ix Intron 0 8.36 5.70 3.37 4.61 8.88 1.71 10.03 7.47 4.73 5.35 3.30 20.40 13.52 3.43 4.84 11.33 6.87 5.57 3.72 9.45 1.24 0.88 3.50 10 Ix_SR1 SilentIntronRegion 0 9.17 6.40 3.26 4.85 10.39 1.76 9.93 8.22 5.03 5.17 3.60 21.66 14.74 3.62 5.39 11.77 8.08 6.23 4.39 9.40 1.10 1.00 3.64 11 Ix_AR1 ActiveIntronRegion 0 3.70 2.74 2.95 2.74 4.68 1.97 11.94 5.20 3.73 5.30 2.86 22.48 10.91 3.47 2.04 8.41 2.22 1.36 0.86 9.16 0.00 0.84 2.37 12 ER2a ExonRegion 0 8.19 3.49 5.15 1.43 7.52 0.05 9.85 3.49 5.63 4.70 3.90 16.20 16.72 2.72 5.42 12.36 7.97 2.66 2.12 8.43 0.71 0.00 5.45 13 E2_Ab KnownBoundary 1 10.37 3.03 4.91 3.73 3.74 0.00 16.16 1.97 3.04 4.92 2.37 45.91 27.27 0.00 0.00 0.00 13.09 0.00 0.00 14.64 0.00 0.00 3.67 14 ER2b ExonRegion 0 19.68 6.03 3.36 1.77 12.69 1.73 17.31 2.78 4.80 4.82 12.24 27.26 18.85 40.75 17.41 17.67 9.47 1.44 5.49 14.70 1.43 0.00 3.05 15 E2_Ac KnownBoundary 0 71.35 6.71 3.43 1.30 49.41 0.00 12.28 2.55 5.99 4.73 30.69 18.61 21.59 119.55 59.58 45.80 8.70 4.19 3.48 12.14 3.09 0.00 8.19 16 ER2c ExonRegion 0 130.27 5.88 3.92 4.48 59.62 6.56 26.82 18.97 7.90 2.69 87.00 67.17 69.39 139.18 100.55 55.46 16.40 1.35 3.76 11.04 2.71 0.48 2.80 17 E2_Da NovelBoundary 1 6.89 9.27 1.24 7.42 0.00 0.00 18.20 6.16 3.27 0.00 0.00 60.47 27.43 14.66 5.19 19.14 9.07 8.50 4.52 13.04 2.35 0.00 8.71 18 E2a_E3a KnownJunction 0 0.00 0.00 0.00 2.00 4.33 0.00 0.00 4.07 0.00 0.00 7.90 12.30 5.84 26.96 58.10 19.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E2a_E4a KnownJunction 0 51.27 0.00 0.00 0.00 14.35 5.00 5.56 22.30 1.79 1.53 63.96 114.49 84.57 74.99 145.00 100.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 Ix Intron 0 11.53 4.09 1.34 2.15 7.14 0.47 10.99 4.71 2.15 2.44 2.33 23.36 23.25 7.00 4.32 8.15 6.03 1.11 2.91 7.23 0.97 0.68 0.97 21 Ix_AR3 ActiveIntronRegion 0 8.66 3.77 1.25 2.17 6.52 0.18 11.05 3.52 1.79 2.67 1.66 21.31 24.68 6.36 2.25 7.25 2.24 1.08 1.24 7.26 0.64 0.61 0.57 22 Ix_SR2 SilentIntronRegion 0 0.00 2.71 0.00 1.59 0.00 0.00 0.00 2.88 0.00 0.00 0.00 13.71 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 Ix_AR2 ActiveIntronRegion 0 9.24 2.14 0.00 1.47 4.95 0.00 11.13 5.95 1.80 1.59 0.89 19.05 18.93 6.60 5.62 5.68 4.77 1.10 1.71 5.04 0.48 0.33 1.87 24 Ix_SR1 SilentIntronRegion 0 5.62 5.73 0.76 1.74 9.12 0.14 15.58 9.12 5.79 2.01 4.18 34.44 24.10 8.78 12.19 14.24 20.06 3.37 8.87 6.76 1.39 0.00 2.26 25 Ix_AR1 ActiveIntronRegion 0 24.32 5.63 3.25 3.68 11.15 1.44 10.27 5.10 2.03 3.92 3.95 30.65 28.99 7.17 4.63 11.94 8.25 0.61 4.93 9.65 1.79 1.35 0.48 26 E3_Aa NovelBoundary 0 21.04 9.01 3.67 3.80 14.35 2.38 25.26 8.91 6.74 1.13 10.63 30.31 7.79 7.00 8.90 12.13 4.68 4.68 0.00 16.94 0.00 4.96 0.00 27 ER3a ExonRegion 0 37.97 4.32 1.94 5.60 18.88 1.95 7.33 5.79 4.44 4.99 18.56 54.30 45.07 32.99 27.52 12.85 10.71 2.19 2.54 8.50 1.76 0.00 1.56 28 E3_Da NovelBoundary 1 23.86 3.29 1.54 3.20 3.40 8.35 5.43 5.87 5.84 11.74 9.84 54.92 47.72 7.06 9.77 0.00 18.23 0.00 0.00 5.69 3.15 0.00 4.35 29 E3a_E4a KnownJunction 0 67.27 0.00 0.00 0.00 0.00 0.00 0.00 6.74 0.00 0.00 11.11 36.91 25.49 35.32 39.68 4.36 3.93 0.00 0.00 0.00 0.00 0.00 0.00 30 Ix Intron 0 6.28 2.41 0.00 2.01 8.46 1.09 7.85 2.55 1.09 1.35 3.06 23.61 20.38 1.91 4.69 4.11 2.61 0.73 1.89 5.89 0.44 0.00 0.58 31 Ix_AR1 ActiveIntronRegion 0 6.78 2.00 0.00 2.02 7.89 1.35 7.89 1.96 0.93 1.38 2.98 19.44 19.46 1.61 4.55 4.52 1.86 0.91 1.30 5.61 0.55 0.00 0.56 32 Ix_SR1 SilentIntronRegion 0 4.32 4.19 0.00 2.03 11.09 0.00 7.84 5.08 1.79 1.24 3.43 41.79 24.69 3.22 5.39 2.49 5.86 0.00 4.42 7.21 0.00 0.00 0.66 33 E4_Aa NovelBoundary 1 41.12 0.00 0.00 13.98 27.42 0.00 10.42 11.25 10.13 5.72 5.00 102.18 34.09 9.71 18.79 19.82 3.74 1.99 0.00 22.43 0.00 0.00 0.00 34 ER4a ExonRegion 0 70.26 0.00 0.00 0.32 34.76 5.27 11.88 6.57 1.44 2.28 30.86 56.98 58.34 42.63 54.38 14.78 4.00 0.29 0.99 4.26 0.00 0.00 0.00 35 E4_Da KnownBoundary 0 79.05 0.00 0.00 1.73 11.88 0.00 0.00 0.00 0.00 0.00 5.00 12.15 19.32 0.00 10.75 7.69 0.00 1.87 0.00 0.00 0.00 0.00 0.00 36 ER4b ExonRegion 0 45.91 1.68 0.33 4.76 9.52 1.44 8.78 2.95 1.44 1.75 8.73 18.59 18.75 18.70 26.09 9.43 5.13 0.66 0.19 5.12 0.00 0.13 2.12 37 ER4c ExonRegion 1 2.00 1.81 0.00 0.23 6.99 0.00 3.09 0.00 0.00 0.00 0.00 22.13 7.82 2.71 0.00 2.64 1.65 0.00 0.00 0.00 0.00 0.00 0.00