Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 STK24 Gene 0 59.64 95.40 66.96 46.56 53.59 33.55 54.99 43.96 42.14 58.36 175.44 205.48 163.52 178.92 123.43 135.16 125.59 64.30 73.00 58.50 83.87 125.39 99.59 2 491878 Transcript 0 0.00 0.00 0.08 0.00 0.00 0.00 0.12 0.11 0.00 0.00 0.12 0.00 0.00 0.25 0.00 0.46 0.93 0.12 0.00 0.27 0.07 0.00 0.00 3 376533 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 376541 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 397517 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 481288 Transcript 0 1.56 0.72 0.58 0.00 0.55 0.30 1.89 0.53 0.74 0.25 0.70 3.64 2.15 0.48 0.69 2.51 0.89 0.23 0.84 0.98 1.69 0.42 2.10 7 376547 Transcript 0 0.48 0.00 0.42 0.00 0.30 0.00 0.30 0.29 0.84 0.00 0.01 1.58 2.20 0.16 0.23 2.03 1.88 0.31 0.00 0.73 1.04 0.00 2.68 8 444574 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 376554 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 418038 Transcript 0 14.37 13.06 9.17 11.82 18.10 7.07 20.87 15.29 11.09 13.18 22.83 31.70 18.60 23.96 14.18 18.83 15.77 18.84 9.28 16.09 22.69 20.81 23.58 11 ER1a ExonRegion 0 0.00 0.00 0.08 0.00 0.00 0.00 0.12 0.11 0.00 0.00 0.12 0.00 0.00 0.25 0.00 0.46 0.93 0.12 0.00 0.27 0.07 0.00 0.00 12 ER2a ExonRegion 0 0.11 1.91 0.11 0.06 0.00 0.68 0.50 0.56 0.07 0.49 27.85 5.50 4.25 6.13 3.13 8.84 13.02 0.89 8.04 1.57 26.65 1.63 7.04 13 E2_Ab KnownBoundary 0 3.11 31.51 3.08 1.33 0.00 16.58 6.71 6.82 2.89 9.40 58.49 25.81 33.76 110.60 55.13 55.03 83.12 18.12 25.22 22.24 74.07 30.56 19.80 14 ER2b ExonRegion 1 12.21 47.51 26.59 17.63 9.23 17.67 30.98 15.01 18.28 33.19 112.86 49.24 62.12 215.57 106.14 66.29 163.79 16.49 30.56 55.16 104.88 71.32 66.80 15 E2a_E5a KnownJunction 0 54.60 114.06 72.38 43.02 51.70 40.32 82.81 29.37 41.17 80.42 276.18 101.88 166.71 340.99 207.68 208.41 305.00 58.53 36.14 62.51 179.65 131.04 172.09 16 ER3a ExonRegion 0 6.68 1.98 1.77 0.00 1.30 0.00 4.82 1.26 2.23 1.25 1.41 1.73 3.75 2.03 2.90 3.61 0.80 0.67 0.77 2.58 3.50 1.52 5.71 17 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 18 I3_AR6 ActiveIntronRegion 0 30.84 20.63 9.80 5.06 10.32 0.52 11.73 16.54 16.41 8.03 2.49 4.95 18.76 0.00 7.05 17.41 11.32 3.70 7.74 2.13 2.20 0.00 20.56 19 I3_AR7 ActiveIntronRegion 0 29.28 22.71 9.80 4.09 10.70 1.83 10.59 14.69 14.82 6.88 3.87 4.33 23.45 1.62 3.38 14.86 16.50 2.16 9.56 2.13 2.20 0.00 13.21 20 I3_AR8 ActiveIntronRegion 0 17.64 19.66 8.58 4.09 7.14 1.83 10.59 13.25 11.73 6.88 2.58 0.00 23.45 4.87 9.67 14.86 19.81 1.85 9.56 0.00 2.20 0.00 8.81 21 I3_AR9 ActiveIntronRegion 0 14.82 13.01 6.00 3.41 3.75 1.83 7.15 12.10 8.15 6.19 1.93 0.00 16.42 4.87 14.51 5.35 16.83 1.85 3.19 0.00 2.20 0.00 8.81 22 I3_AR11 ActiveIntronRegion 0 21.83 10.22 13.28 8.13 3.51 0.56 11.15 22.05 16.17 11.81 3.87 7.22 11.37 1.57 13.63 21.12 14.42 9.28 8.86 6.26 3.10 0.64 24.88 23 I3_SR6 SilentIntronRegion 0 14.68 6.12 8.35 6.91 9.65 0.84 8.06 12.37 12.13 5.63 0.67 12.57 9.22 1.17 15.75 10.89 5.53 2.29 2.72 6.49 1.41 0.89 10.61 24 I3_AR19 ActiveIntronRegion 0 17.40 10.62 4.49 6.36 2.68 0.00 2.94 5.57 5.35 5.35 1.93 0.00 4.69 0.00 7.74 8.92 3.30 0.41 3.19 0.00 2.20 0.00 0.65 25 I3_AR20 ActiveIntronRegion 0 23.14 12.34 8.28 9.12 8.95 0.00 6.99 9.77 8.31 7.12 1.93 9.85 4.69 0.00 12.11 7.79 3.87 1.85 1.76 0.00 1.82 0.00 9.11 26 I3_AR21 ActiveIntronRegion 0 13.12 10.12 9.26 7.71 8.77 0.29 9.84 13.01 14.36 10.76 0.35 9.50 10.30 1.51 13.50 9.73 3.62 1.97 0.76 3.74 3.29 0.15 8.52 27 ER4a ExonRegion 0 0.96 0.00 0.83 0.00 0.61 0.00 0.59 0.59 1.67 0.00 0.02 3.15 4.40 0.33 0.47 4.06 3.76 0.63 0.00 1.46 2.09 0.00 5.36 28 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER5a ExonRegion 0 88.05 165.04 189.26 140.44 123.14 85.91 108.77 134.23 149.67 223.15 846.73 729.11 817.97 611.92 353.84 361.28 561.66 158.99 187.81 198.24 284.27 529.11 276.82 30 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E5a_E8a KnownJunction 1 197.59 196.94 327.07 267.27 188.37 112.78 134.61 219.29 213.31 333.38 944.40 2054.77 1649.89 742.78 458.00 489.36 577.75 157.07 273.80 307.89 142.09 869.03 308.93 32 ER5b ExonRegion 0 144.89 176.67 282.65 253.10 157.53 83.06 109.06 219.73 212.44 326.63 975.55 1729.08 1448.83 743.71 492.85 502.29 613.00 174.23 240.10 274.47 169.41 870.82 353.50 33 I5_AR1 ActiveIntronRegion 0 2.12 6.10 2.45 7.04 18.73 0.00 10.59 1.73 2.47 0.00 0.00 12.27 0.00 0.00 7.74 2.97 11.00 0.00 0.00 6.38 0.00 0.00 5.87 34 ER6a ExonRegion 0 1.14 1.65 0.97 0.00 1.44 1.48 4.64 1.39 1.49 0.00 2.09 14.66 7.02 0.36 0.55 8.95 3.63 0.50 3.44 2.30 1.78 0.56 4.77 35 ER7a ExonRegion 0 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER8a ExonRegion 0 147.41 228.19 333.67 263.40 202.56 101.66 194.69 247.65 260.65 361.19 1158.86 2235.14 1819.40 911.47 594.45 709.92 743.57 273.30 329.71 318.66 218.75 890.43 488.77 37 E8a_E9a KnownJunction 1 116.61 317.58 373.29 295.87 339.98 184.21 335.11 261.31 273.96 372.31 1249.79 2239.48 2167.39 1097.01 928.00 997.17 921.36 295.31 456.48 420.38 325.38 1044.89 681.03 38 ER9a ExonRegion 1 111.50 273.23 294.56 223.29 342.18 241.37 329.01 209.00 207.52 321.38 1000.07 1766.50 1842.11 918.67 603.09 665.62 638.13 272.21 287.76 282.63 309.31 857.89 475.87 39 E9a_E10a KnownJunction 1 135.65 316.59 277.96 200.67 230.05 229.24 199.84 201.80 184.43 300.29 894.54 2006.90 1697.78 859.32 647.26 673.41 579.99 387.84 284.71 271.26 361.46 658.81 523.19 40 ER10a ExonRegion 0 108.93 221.78 300.47 202.25 162.34 132.38 148.13 196.34 181.80 296.10 997.75 1873.78 1382.13 891.68 670.80 790.48 676.82 422.70 337.62 251.24 457.46 586.05 540.62 41 E10_Da KnownBoundary 0 228.86 253.05 827.17 365.09 299.92 277.11 291.08 395.58 355.41 549.19 1435.05 942.76 767.97 1034.03 486.06 732.20 959.33 729.91 683.78 451.32 863.59 576.57 577.40 42 ER10b ExonRegion 0 114.45 188.16 299.73 166.14 175.46 106.22 151.53 180.19 189.90 269.87 1004.77 938.20 845.61 988.03 511.85 641.83 700.78 322.43 314.24 234.57 553.68 532.91 467.59 43 E10b_E11a KnownJunction 0 143.58 269.43 319.18 181.30 175.72 161.04 186.23 152.26 184.78 253.55 866.90 1080.65 1084.34 1007.42 722.05 777.32 610.19 280.35 396.15 245.06 426.14 640.75 482.05 44 I10_SR1 SilentIntronRegion 0 12.39 2.24 2.62 4.92 4.15 0.76 7.64 3.14 3.02 2.62 3.41 10.61 5.13 4.96 8.34 7.51 9.67 8.36 2.96 4.03 6.65 5.03 9.73 45 ER11a ExonRegion 0 202.29 357.17 348.07 210.16 248.14 183.01 256.24 198.99 189.19 271.30 1026.11 1000.71 994.69 948.63 624.32 871.52 729.76 385.06 395.62 251.04 503.55 523.04 558.03 46 E11a_E12a KnownJunction 0 198.04 376.18 359.86 205.44 210.10 196.70 193.65 169.55 170.69 229.35 866.17 621.65 393.97 887.52 536.50 638.46 609.72 260.82 375.73 249.15 451.96 468.74 437.40 47 I11_AR1 ActiveIntronRegion 1 17.62 3.38 4.94 12.30 13.63 5.52 13.27 11.53 10.59 4.50 6.47 63.08 48.78 15.84 10.96 9.92 4.67 2.30 7.38 5.50 0.00 32.47 9.76 48 E12_Aa NovelBoundary 0 16.23 21.90 8.40 7.56 8.66 2.84 20.76 12.90 5.24 2.95 19.90 17.71 6.82 29.20 4.45 7.43 21.04 14.80 0.00 5.75 11.06 22.11 38.67 49 ER12a ExonRegion 0 217.31 457.16 303.68 179.48 188.18 136.09 174.97 146.12 137.95 224.44 863.19 599.71 422.28 803.75 491.37 620.72 566.87 248.10 320.31 226.96 425.82 484.94 448.63 50 E12_Ab KnownBoundary 0 334.36 658.96 311.91 201.81 207.39 100.11 218.78 159.78 139.29 236.30 840.27 739.44 647.52 824.60 616.85 654.19 639.18 199.76 319.63 251.13 381.54 538.67 495.11 51 ER12b ExonRegion 0 239.80 703.45 273.66 183.41 169.40 84.26 172.40 163.67 135.40 219.31 587.33 746.23 517.55 753.18 534.42 534.70 455.73 195.94 286.55 203.42 341.13 466.40 358.36 52 E12a_E13a KnownJunction 0 232.56 639.36 293.01 186.79 175.72 114.76 168.66 178.38 144.56 225.21 575.51 1004.58 617.98 710.88 629.09 514.14 386.25 224.72 302.97 248.51 311.79 485.21 363.13 53 ER13a ExonRegion 0 202.96 464.26 315.46 238.00 226.83 124.46 263.35 158.79 146.36 217.11 624.76 866.80 391.01 717.80 520.40 531.65 437.98 225.71 305.05 223.47 312.66 507.87 410.92 54 E13a_E14a KnownJunction 1 242.12 605.42 353.51 296.17 300.42 186.20 344.12 170.42 152.08 221.56 574.94 741.54 239.76 582.50 432.66 565.24 449.65 256.55 336.67 249.21 295.67 600.64 430.40 55 E13a_E15a KnownJunction 0 0.00 2.89 5.29 1.93 0.00 0.00 0.00 1.60 3.56 0.00 7.11 6.15 0.00 11.89 11.50 3.67 3.93 1.66 17.22 4.79 2.47 0.00 6.66 56 ER14a ExonRegion 0 225.09 607.36 287.22 199.97 207.54 121.19 223.19 144.56 142.09 202.44 545.69 623.69 299.75 725.44 564.27 477.26 417.68 230.62 296.56 208.60 260.33 537.31 390.23 57 E14a_E15a KnownJunction 0 357.77 893.46 272.49 181.10 210.27 110.05 157.22 126.18 141.55 181.51 558.40 616.25 391.70 906.77 705.36 439.71 436.56 187.54 302.22 244.10 268.42 513.08 409.49 58 I14_AR1 ActiveIntronRegion 0 13.76 6.10 1.23 2.73 5.35 2.93 5.03 1.73 2.47 4.36 0.97 12.99 5.63 4.55 13.64 8.92 6.60 8.68 3.19 7.23 15.65 10.00 5.87 59 ER15a ExonRegion 1 240.74 554.65 251.93 153.15 119.24 79.54 129.25 114.41 127.47 148.97 524.90 530.94 179.18 578.12 497.13 382.43 449.84 230.73 228.53 189.75 300.54 383.57 326.20 60 E15_Da KnownBoundary 0 13.71 8.95 5.68 5.26 7.30 0.00 25.97 8.38 4.54 5.45 7.32 18.91 0.00 18.60 0.00 14.61 16.08 19.11 17.41 11.95 13.47 6.06 15.79 61 E15a_E15b KnownJunction 0 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 3.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 5.33 3.33 62 E15a_E16a KnownJunction 0 218.41 372.50 216.99 140.38 156.54 96.88 168.70 125.32 133.45 150.13 334.98 322.31 154.05 508.63 478.15 342.22 349.42 226.87 152.95 122.34 212.27 321.48 274.53 63 ER15b ExonRegion 0 11.26 10.29 9.78 9.99 13.07 4.56 16.71 14.75 8.77 12.51 20.94 14.16 9.90 20.80 12.07 16.06 16.91 20.03 10.67 16.25 24.75 20.10 24.24 64 E15_Ab KnownBoundary 0 3.78 0.00 9.37 6.69 6.37 20.50 15.68 9.69 2.84 5.91 23.95 6.15 0.00 19.19 11.50 3.59 3.74 23.42 4.24 17.83 17.36 14.63 23.56 65 ER15c ExonRegion 0 6.17 5.42 8.17 7.13 2.73 3.74 8.19 6.55 4.13 11.18 16.41 5.37 4.30 23.85 11.82 19.32 11.17 15.65 4.98 8.60 19.86 12.80 15.48 66 E15_Db KnownBoundary 0 10.37 6.38 2.45 14.32 4.24 2.84 11.79 9.04 6.66 8.76 18.79 17.71 0.00 32.55 4.45 19.65 8.79 12.93 4.24 8.76 25.08 13.53 20.74 67 ER15d ExonRegion 0 14.80 12.75 9.13 8.68 16.49 6.40 16.18 13.44 12.48 11.75 18.01 12.90 9.67 24.31 8.80 17.14 15.41 15.94 7.43 15.28 19.99 20.39 17.25 68 E15_Dc KnownBoundary 0 24.82 35.39 7.16 18.05 23.09 24.87 37.27 20.99 10.94 12.87 25.01 64.37 32.63 12.01 6.30 15.72 14.96 9.37 4.42 9.65 0.00 32.76 11.61 69 ER15e ExonRegion 0 17.48 15.83 8.57 13.65 23.14 9.59 25.04 15.83 13.42 13.85 24.73 49.23 27.30 27.13 16.28 21.60 14.63 17.65 7.89 15.93 20.63 21.52 22.92 70 E15_Dd NovelBoundary 0 29.71 42.76 27.56 26.17 19.69 14.76 51.54 27.44 47.28 21.89 21.16 31.36 6.98 34.49 9.52 19.23 4.21 24.62 16.85 16.62 37.19 78.62 57.62 71 I15 Intron 0 19.54 25.59 15.63 11.88 23.35 10.05 25.08 17.44 10.22 13.99 23.40 25.43 14.95 20.56 14.18 14.37 15.85 11.66 8.62 13.38 17.51 23.32 15.69 72 I15_AR1 ActiveIntronRegion 0 13.54 21.10 16.62 12.04 18.22 9.32 23.35 15.13 10.65 13.65 24.93 20.31 15.12 24.12 12.91 19.97 18.57 18.83 11.09 12.89 24.12 22.19 18.86 73 I15_AR2 ActiveIntronRegion 0 26.81 38.10 13.56 6.91 35.14 7.70 27.54 27.31 9.88 19.19 21.91 27.42 40.02 22.74 18.37 18.43 8.80 14.91 21.66 6.38 19.69 21.11 26.04 74 I15_SR2 SilentIntronRegion 1 22.13 18.04 25.81 6.96 22.39 7.10 18.19 29.16 10.71 17.08 35.17 35.48 34.67 28.28 26.17 19.12 17.37 13.42 14.75 8.83 22.37 28.35 37.86 75 I15_AR3 ActiveIntronRegion 0 13.81 25.66 15.12 12.23 22.12 10.25 25.96 15.22 9.46 11.10 27.41 21.89 14.55 22.91 13.50 11.00 22.22 11.41 10.95 14.11 17.34 21.66 15.20 76 I15_SR3 SilentIntronRegion 0 30.68 31.39 14.77 12.70 30.52 11.07 27.45 21.21 10.97 16.98 18.59 33.73 12.53 14.70 15.03 11.75 8.51 4.66 3.52 14.50 11.22 26.79 11.15 77 E16_Aa NovelBoundary 0 20.30 17.04 23.71 14.12 20.20 4.43 40.89 20.37 10.45 15.90 9.37 24.31 0.00 19.78 4.45 8.37 4.77 4.10 0.00 3.20 5.81 13.10 0.00 78 I15_AR4 ActiveIntronRegion 0 12.92 10.73 5.37 1.36 5.91 8.98 12.55 3.10 0.64 4.31 2.80 11.50 13.91 9.18 10.50 0.00 1.48 2.61 0.00 4.70 1.52 3.16 2.94 79 ER16a ExonRegion 0 152.92 112.65 70.82 47.45 78.58 44.10 78.06 36.52 34.92 45.41 140.92 83.06 39.44 204.05 155.29 164.84 105.24 54.01 97.33 46.61 72.71 115.88 109.49 80 E16_Da KnownBoundary 0 16.60 5.85 9.88 7.86 3.23 14.65 9.19 12.32 10.27 7.76 8.00 23.41 15.10 8.01 0.00 8.54 0.00 4.15 8.47 13.42 13.90 12.86 14.60 81 E16_Db KnownBoundary 0 3.63 18.55 8.60 4.69 8.66 8.35 7.77 9.90 5.03 4.35 7.16 6.30 13.31 10.30 4.45 7.69 12.81 17.49 7.34 14.13 3.09 16.59 0.00 82 ER16b ExonRegion 1 27.51 36.60 24.51 16.35 13.38 20.17 17.21 25.93 19.76 13.76 34.79 43.29 84.42 43.85 23.21 23.78 23.11 25.87 35.04 31.91 26.44 37.50 23.49 83 ER16c ExonRegion 0 12.69 38.27 15.73 10.61 13.88 9.81 15.54 18.65 16.82 18.11 7.33 8.70 6.01 11.04 9.30 7.22 7.58 18.66 17.39 22.71 11.24 14.49 10.88