Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FBXL3 Gene 0 81.72 111.00 48.26 78.83 135.82 106.78 80.04 89.65 84.24 76.99 102.75 220.87 135.84 89.15 54.30 64.24 70.04 33.78 21.69 50.74 67.59 189.63 66.66 2 417323 Transcript 0 0.12 3.33 0.09 2.58 0.26 3.43 1.57 2.12 2.20 1.07 8.31 3.15 0.00 2.56 1.17 2.46 2.89 2.75 0.52 4.33 9.84 5.25 3.64 3 355619 Transcript 0 75.63 114.80 52.91 89.79 137.22 138.15 93.42 110.86 120.96 91.37 189.73 333.63 200.80 158.72 53.86 142.46 129.85 68.17 37.32 79.29 142.46 271.84 130.41 4 472949 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.06 0.00 5 470210 Transcript 0 4.69 5.40 1.59 6.95 10.37 9.43 7.66 7.70 6.60 4.32 8.45 17.92 13.22 7.46 2.01 5.88 6.98 4.24 2.04 6.75 7.51 7.69 7.90 6 477982 Transcript 0 9.39 2.69 0.19 2.33 12.05 10.81 14.00 2.98 9.41 2.59 4.57 0.56 4.80 1.95 0.50 0.34 2.47 1.11 0.00 0.02 1.98 0.97 4.42 7 485797 Transcript 0 13.67 16.91 10.89 17.15 29.84 30.46 25.13 23.72 28.05 19.93 51.97 70.86 26.48 37.21 10.81 25.29 34.07 19.34 8.21 18.60 31.59 54.64 25.48 8 ER1a ExonRegion 0 0.23 0.93 0.19 0.00 0.52 6.86 3.14 0.26 1.48 0.77 9.03 0.00 0.00 5.12 2.33 4.91 1.94 1.61 1.04 3.28 19.69 7.93 7.28 9 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 3.31 18.57 10.25 0.00 4.37 5.91 24.43 0.00 0.00 11.95 10.01 11.88 7.67 12.44 7.91 11.76 48.50 20.70 27.74 10 ER1b ExonRegion 1 19.44 15.46 3.15 0.00 20.13 63.17 25.89 8.51 8.95 10.96 75.32 0.00 0.00 54.55 32.40 51.62 72.92 13.39 11.61 18.69 132.02 53.85 64.52 11 E1_Ac KnownBoundary 0 2.89 9.54 5.29 0.00 8.66 15.33 6.14 8.75 9.61 21.89 16.53 0.00 0.00 7.06 4.45 6.84 23.75 12.27 0.00 5.75 27.43 8.33 15.02 12 ER1c ExonRegion 0 3.94 6.05 2.69 4.79 6.73 17.23 9.06 8.58 10.07 13.75 46.36 10.34 12.27 43.17 19.87 31.00 43.64 16.41 5.28 18.04 72.45 41.94 34.03 13 E1a_E2a KnownJunction 0 7.56 40.91 4.23 17.61 48.30 88.59 31.36 37.79 43.55 22.11 62.91 25.21 46.43 40.91 27.32 34.78 46.47 49.04 4.52 43.91 112.31 58.42 35.34 14 E1a_E3b NovelJunction 0 3.78 6.45 0.00 7.72 16.55 31.91 5.83 13.31 9.64 9.70 11.63 31.21 8.28 22.19 34.49 11.54 21.88 0.00 4.52 0.00 11.98 10.84 12.04 15 E1a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.06 0.00 16 ER2a ExonRegion 1 31.51 55.79 28.33 48.79 73.54 87.49 49.39 74.57 103.06 60.06 178.19 179.13 115.95 137.73 30.00 115.94 142.89 100.51 36.50 64.43 189.16 217.33 109.95 17 E2_Da KnownBoundary 0 40.45 50.71 29.30 66.23 48.64 34.92 47.43 87.69 118.55 52.89 142.04 316.00 193.98 127.14 41.41 117.23 141.94 104.63 46.78 81.24 172.98 232.81 135.81 18 E2a_E3b KnownJunction 0 0.00 5.72 0.00 5.16 0.00 0.00 0.00 3.98 2.92 1.37 7.58 6.30 0.00 0.00 0.00 0.00 3.83 3.90 0.00 5.37 0.00 2.57 0.00 19 ER2b ExonRegion 1 41.61 59.92 36.88 61.24 77.97 89.47 67.78 87.55 131.84 82.73 237.32 316.17 194.86 166.19 37.11 159.42 174.67 100.54 51.25 79.05 215.52 290.61 149.28 20 E2b_E3b KnownJunction 1 48.45 98.67 40.95 79.58 109.00 169.22 90.45 103.26 111.89 75.11 223.58 365.52 212.00 205.13 37.95 197.30 149.32 76.03 35.67 95.17 163.40 245.91 170.47 21 ER3a ExonRegion 0 4.51 6.81 2.34 8.89 13.50 10.05 8.35 13.53 6.28 5.54 12.52 19.76 8.77 11.86 1.14 6.98 9.76 6.99 2.08 6.01 12.84 11.41 12.64 22 ER3b ExonRegion 1 67.79 102.98 34.28 81.77 134.68 143.49 81.94 119.12 118.98 92.52 222.77 359.59 183.82 171.39 37.64 140.27 179.07 97.67 51.59 90.72 172.20 232.66 159.88 23 E3_Ac KnownBoundary 0 98.68 129.78 39.38 97.02 151.02 151.39 94.07 126.80 132.46 118.78 230.37 374.82 206.64 159.52 88.39 116.12 212.72 104.13 66.35 105.21 179.71 269.73 175.42 24 ER3c ExonRegion 0 84.22 92.60 38.87 86.02 137.24 212.23 123.34 115.42 131.34 121.39 276.63 413.62 204.45 161.60 54.99 127.80 212.18 107.36 39.85 95.97 211.30 247.41 154.86 25 E3a_E4b KnownJunction 0 112.54 97.22 58.10 109.04 172.16 186.26 133.37 128.85 147.83 102.96 264.38 452.55 152.26 214.20 62.43 140.48 215.90 123.86 38.50 102.71 185.21 340.52 169.10 26 ER4a ExonRegion 0 39.16 44.74 24.51 49.06 80.27 83.44 60.90 60.50 65.46 49.89 148.83 207.81 72.70 103.13 30.46 72.82 97.38 54.51 22.30 47.87 89.25 155.22 73.42 27 ER4b ExonRegion 0 64.08 99.73 46.64 91.21 152.56 147.77 108.87 104.06 118.21 100.20 225.48 418.77 260.13 224.29 74.93 153.52 204.99 98.25 50.87 96.05 163.14 290.42 180.45 28 E4_Da KnownBoundary 0 80.09 99.46 43.79 87.60 174.53 194.26 152.80 116.90 108.85 134.77 202.89 339.11 281.15 202.13 82.33 178.24 187.19 76.27 52.33 113.39 136.65 313.64 194.37 29 ER4c ExonRegion 0 76.94 95.26 37.00 87.64 131.56 176.84 118.61 87.25 132.98 108.72 268.81 394.96 257.72 213.44 71.25 140.27 190.64 90.43 54.43 102.48 216.35 247.43 177.98 30 E4_Db KnownBoundary 0 0.00 6.31 1.30 4.83 0.00 0.00 10.11 2.38 8.04 3.71 13.42 37.36 19.15 4.53 4.45 6.84 0.00 0.00 0.00 14.70 8.53 0.00 0.00 31 E4b_E5a KnownJunction 1 79.57 131.75 40.77 78.94 128.10 129.24 93.36 63.99 118.14 91.25 221.27 316.00 296.73 200.54 37.33 131.76 183.64 110.47 14.21 96.83 197.63 234.65 166.29 32 E4b_E6a KnownJunction 0 14.08 3.35 0.00 3.10 21.48 15.73 22.79 4.44 16.23 4.30 7.53 0.00 6.82 2.41 0.00 0.00 4.49 2.11 0.00 0.00 3.15 0.00 8.28 33 E4b_E7a KnownJunction 0 0.00 2.76 1.83 0.00 3.74 2.73 7.95 2.55 7.44 4.49 0.00 0.00 0.00 4.59 0.00 0.00 0.00 0.00 0.00 3.13 0.00 5.45 0.00 34 ER4d ExonRegion 0 4.87 4.00 0.83 5.02 7.24 8.82 6.97 1.88 6.91 3.11 4.37 16.08 17.66 3.06 2.88 4.79 4.19 1.50 2.00 7.48 2.18 3.96 3.17 35 I4_AR1 ActiveIntronRegion 0 11.97 9.66 8.88 12.63 31.17 17.63 21.26 16.59 13.53 11.41 4.59 14.28 20.03 9.66 5.73 8.07 6.72 4.06 9.73 7.94 2.24 6.13 5.31 36 I4_SR2 SilentIntronRegion 0 8.79 15.54 11.00 17.97 27.61 13.34 21.16 15.06 18.12 14.07 4.01 20.59 11.70 4.61 5.60 4.86 10.06 3.56 5.32 11.80 3.92 7.55 1.74 37 I4_AR2 ActiveIntronRegion 0 15.41 15.72 13.01 27.38 28.44 10.60 20.71 23.31 16.26 20.20 3.00 22.04 18.69 5.77 4.77 4.50 6.65 4.04 5.61 13.13 2.73 11.99 4.00 38 E5_Aa NovelBoundary 0 6.59 11.97 5.06 11.65 62.39 23.17 18.55 17.42 24.36 18.35 2.68 21.61 13.31 4.94 0.00 4.36 0.00 4.48 3.48 11.57 3.15 0.00 3.41 39 ER5a ExonRegion 0 102.07 145.54 49.97 92.89 165.31 169.96 116.96 106.80 127.89 114.96 267.76 357.16 214.88 199.49 59.11 149.04 187.90 96.50 45.87 115.92 193.74 257.07 157.43 40 E5_Da KnownBoundary 1 140.02 125.83 79.15 142.04 218.59 197.90 154.17 131.44 143.52 132.27 243.69 494.71 243.00 193.30 43.27 154.06 144.65 98.70 38.59 94.79 124.23 287.25 123.35 41 ER5b ExonRegion 0 136.82 185.81 80.90 128.56 224.69 155.77 122.02 141.76 119.15 116.28 108.30 319.19 195.53 104.82 86.53 70.65 65.56 27.94 25.03 63.64 48.45 279.00 71.49 42 I5 Intron 0 11.32 13.82 7.09 13.89 23.10 12.13 18.12 13.01 14.24 12.84 4.42 22.25 10.70 5.18 5.76 5.84 6.98 5.54 6.66 13.13 3.62 11.14 6.79 43 I5_AR1 ActiveIntronRegion 0 14.82 14.24 6.13 17.94 16.05 27.51 23.83 22.47 14.00 22.75 7.73 15.87 23.45 2.17 6.77 14.86 6.60 5.54 7.43 17.38 1.47 17.71 8.81 44 I5_AR2 ActiveIntronRegion 0 10.80 14.11 8.25 15.56 22.14 14.43 23.02 12.85 12.91 15.21 4.96 21.61 11.50 5.71 3.59 4.84 7.60 7.79 5.53 18.38 5.34 9.99 8.71 45 I5_AR3 ActiveIntronRegion 0 23.66 24.47 12.20 18.31 33.13 14.92 22.80 24.20 18.94 16.53 7.44 24.85 9.16 8.60 10.29 9.63 12.72 6.81 9.41 13.00 7.69 14.44 11.11 46 E6_Aa NovelBoundary 0 72.75 64.46 33.12 85.04 165.11 79.10 110.14 51.88 61.66 51.63 30.96 77.13 36.20 50.03 68.73 26.40 15.80 13.93 9.13 32.73 95.88 126.45 58.56 47 ER6a ExonRegion 0 4.71 2.02 0.38 1.57 2.63 5.90 5.22 1.52 2.59 0.88 1.60 1.12 2.78 1.48 1.01 0.67 0.46 0.11 0.00 0.04 0.80 1.94 0.55 48 E6_Da NovelBoundary 0 77.87 43.54 77.29 77.81 220.63 68.48 100.96 52.90 67.68 73.01 44.96 157.70 97.07 23.84 38.07 27.34 51.89 13.93 31.44 43.21 71.97 101.95 55.40 49 Ix_AR3 ActiveIntronRegion 0 20.37 12.87 8.28 17.55 31.65 13.97 19.80 16.85 23.28 19.79 8.20 21.96 16.69 11.62 8.31 10.72 6.91 6.19 4.26 8.63 11.76 7.71 9.17 50 Ix_SR3 SilentIntronRegion 0 9.84 7.97 3.71 9.72 22.64 5.95 15.96 9.30 6.84 17.70 11.60 21.53 23.45 16.02 5.10 4.66 7.49 1.85 3.44 4.26 5.06 3.89 6.19 51 Ix Intron 0 17.64 3.54 10.10 4.46 7.10 4.03 4.92 5.86 5.86 3.89 9.37 12.58 6.27 4.89 7.42 5.41 8.00 3.70 3.14 4.03 7.35 4.11 3.34 52 Ix_AR3 ActiveIntronRegion 0 17.05 0.00 2.21 2.53 2.22 4.08 3.38 6.55 7.43 2.07 3.95 6.95 2.38 2.58 7.19 6.20 4.70 0.78 4.40 4.41 9.62 4.34 4.01 53 Ix_AR2 ActiveIntronRegion 0 21.17 2.03 11.03 9.54 10.70 5.04 5.46 11.67 13.59 5.73 7.73 2.71 4.69 5.28 6.17 14.12 16.09 2.77 4.38 7.18 12.40 12.50 6.24 54 Ix_SR1 SilentIntronRegion 0 14.30 4.75 15.79 5.43 6.43 4.33 4.54 6.70 5.80 4.41 10.95 13.36 5.22 4.78 8.37 6.34 10.07 4.53 4.06 4.46 9.61 3.03 2.83 55 Ix_AR1 ActiveIntronRegion 0 21.24 3.29 6.08 3.73 8.90 3.62 5.71 4.47 5.18 3.73 9.22 13.74 8.49 5.64 6.61 3.78 6.26 3.64 1.72 3.40 4.15 4.81 3.52 56 ER7a ExonRegion 0 1.87 3.22 6.32 2.39 5.51 5.21 6.54 8.10 11.25 5.42 7.08 4.77 6.73 3.92 1.98 3.06 4.83 3.51 2.34 4.80 5.51 3.25 3.02