Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AL354696.6 Gene 0 8.76 6.57 5.17 9.00 15.08 10.48 9.93 3.37 2.21 4.79 4.13 19.97 19.33 7.56 13.27 17.62 10.84 4.44 7.06 9.66 5.59 3.12 9.02 2 499512 Transcript 0 5.25 3.61 6.16 8.21 18.67 12.16 9.32 4.29 1.68 8.74 5.92 22.02 8.76 7.32 11.17 30.01 23.89 6.14 10.31 15.90 6.54 2.23 17.61 3 ER1a ExonRegion 0 17.37 13.30 5.07 10.22 48.76 42.57 26.82 3.62 0.74 7.54 6.97 10.62 11.99 15.12 19.52 62.69 32.92 5.70 16.53 15.88 9.29 2.74 28.64 4 E1a_E2a KnownJunction 0 0.00 0.00 14.19 12.75 15.45 5.00 19.17 9.61 1.07 12.25 9.58 29.71 0.00 0.00 4.45 48.88 31.32 9.33 12.42 33.75 8.28 0.00 36.02 5 ER2a ExonRegion 0 6.87 3.84 6.99 5.94 5.65 2.20 3.78 4.76 0.63 11.79 14.22 22.24 8.45 7.52 10.32 11.74 27.18 6.73 4.44 19.20 11.64 1.54 10.91 6 E2_Da NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.91 20.13 0.00 4.45 0.00 8.98 0.00 3.95 2.56 0.00 0.00 0.00 7 E2a_E3a KnownJunction 0 0.00 0.00 3.76 5.39 8.32 2.21 0.00 1.77 2.81 12.41 0.00 36.01 6.82 7.36 16.07 16.49 50.12 5.89 17.04 14.57 2.41 2.45 10.67 8 ER3a ExonRegion 0 3.84 1.49 8.29 12.95 29.05 22.80 6.17 7.38 2.56 12.11 7.59 22.66 13.04 10.27 15.04 59.42 17.96 11.77 16.06 17.17 9.53 5.88 27.45 9 E3_Da NovelBoundary 0 0.00 0.00 4.46 5.63 19.95 2.27 7.68 3.74 2.92 2.77 0.00 0.00 13.64 4.94 5.19 17.00 0.00 2.03 4.80 9.27 6.30 0.00 4.01 10 E3a_E4a KnownJunction 0 0.00 0.00 0.00 1.53 11.63 2.90 0.00 0.00 1.56 1.50 0.00 12.60 0.00 4.24 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 3.76 11 I3 Intron 0 2.65 2.84 3.09 6.13 5.69 2.77 4.26 3.46 1.04 2.67 1.33 17.12 12.89 2.38 3.90 4.43 3.42 1.64 1.68 3.98 1.00 1.36 2.61 12 I3_SR1 SilentIntronRegion 0 2.54 3.51 2.45 5.46 6.11 3.37 3.89 3.93 1.04 2.96 1.45 18.38 13.26 2.71 4.80 4.97 2.80 1.84 1.17 3.97 0.75 1.68 2.90 13 I3_AR1 ActiveIntronRegion 0 3.27 1.79 5.08 8.88 5.53 2.14 5.72 2.83 1.14 2.53 1.39 17.72 15.08 2.21 2.15 4.63 5.20 1.20 3.28 4.24 1.81 1.06 2.21 14 I3 Intron 0 12.09 24.44 10.15 19.68 25.88 25.97 12.52 13.78 11.73 17.03 4.29 26.45 15.72 6.95 7.73 5.65 5.46 2.78 3.55 14.19 1.01 4.55 3.14 15 I3_AR1 ActiveIntronRegion 0 2.85 2.37 2.29 6.53 3.32 4.40 3.43 2.77 1.48 2.63 1.37 14.84 7.81 0.90 1.98 2.35 1.55 2.45 1.06 5.52 1.08 2.32 1.05 16 I3_AR2 ActiveIntronRegion 1 28.71 48.73 19.97 39.88 52.26 61.78 23.33 37.89 34.76 53.50 14.83 74.86 29.53 13.88 23.11 8.68 9.72 6.00 4.33 36.65 0.70 10.07 2.78 17 I3_SR3 SilentIntronRegion 0 30.60 38.41 18.40 53.78 67.76 76.91 31.34 31.09 30.61 50.06 13.51 74.80 35.64 22.16 15.22 9.68 13.08 7.74 13.83 34.06 0.73 8.07 4.76 18 I3_AR3 ActiveIntronRegion 0 47.22 127.80 43.73 74.75 114.04 121.84 51.14 58.91 52.51 70.46 17.24 78.33 45.61 32.21 27.64 17.59 18.04 7.71 14.81 49.48 1.43 17.75 6.53 19 Ix_AR1 ActiveIntronRegion 0 4.56 3.84 3.58 10.10 8.25 6.51 7.21 6.40 5.34 5.74 4.07 21.71 15.52 4.71 6.32 9.06 7.54 1.18 3.05 10.47 2.25 0.67 3.11 20 Ix_AR2 ActiveIntronRegion 0 9.66 6.48 4.37 7.75 8.03 7.11 6.04 9.51 2.47 6.67 3.87 22.19 19.93 3.65 10.88 6.87 9.08 3.70 3.19 14.10 0.00 0.00 2.94 21 Ix_AR3 ActiveIntronRegion 0 5.39 6.75 2.45 4.83 16.30 8.00 5.90 12.81 2.19 5.79 2.20 26.57 22.17 3.10 11.87 4.73 4.50 3.11 0.00 5.13 5.91 0.00 4.00 22 Ix_SR2 SilentIntronRegion 0 5.18 6.04 0.89 5.15 12.28 6.61 5.66 2.54 1.22 5.09 0.85 11.43 17.69 2.57 4.90 3.73 2.74 0.96 2.45 3.75 1.42 1.37 2.75 23 E4_Aa NovelBoundary 0 234.04 246.07 379.02 431.75 187.61 148.10 274.25 424.38 393.11 446.63 48.43 46.07 33.44 25.37 81.34 123.64 149.70 317.57 168.29 206.39 60.73 85.60 143.07 24 ER4a ExonRegion 0 8.66 6.67 4.80 8.72 11.80 7.42 9.33 2.92 2.37 3.57 3.09 20.30 21.00 6.76 12.80 10.81 7.72 3.57 5.68 8.03 4.65 2.98 5.80