Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PCDH9 Gene 0 14.23 95.37 3.31 29.44 4.32 100.50 17.98 10.37 12.04 14.74 0.09 10.24 4.81 22.33 1.99 6.22 37.64 37.46 15.88 37.50 9.32 8.00 9.28 2 377861 Transcript 0 28.16 133.35 2.36 14.99 6.00 18.08 23.19 8.13 3.83 8.14 0.00 9.22 5.11 16.88 3.94 4.49 21.07 9.36 9.20 27.39 3.13 10.92 3.31 3 456367 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 377865 Transcript 0 4.36 64.70 1.86 17.86 2.36 77.41 2.87 3.58 3.55 9.00 0.00 0.00 0.00 1.60 0.28 0.00 1.25 6.78 6.86 4.72 0.83 0.72 2.50 5 328454 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 9.82 77.81 3.13 18.32 6.02 80.09 22.29 12.89 8.85 12.16 0.00 11.26 4.88 30.39 2.50 8.33 58.38 90.06 22.00 67.58 15.84 5.85 22.35 7 E1a_E2a KnownJunction 0 26.00 108.60 1.83 18.65 8.15 44.12 31.97 10.35 7.78 17.16 0.00 6.30 8.12 29.49 0.00 4.36 35.34 40.50 16.47 80.60 5.13 5.45 18.44 8 ER2a ExonRegion 0 16.96 103.25 3.31 17.40 4.62 56.51 22.91 10.29 14.88 15.09 0.00 12.22 8.21 40.13 1.88 6.40 51.46 44.17 15.51 65.33 9.53 6.69 15.91 9 E2_Ab KnownBoundary 0 30.52 92.88 1.80 12.85 8.66 66.16 30.30 7.93 12.09 25.63 0.00 35.56 13.15 42.26 0.00 8.72 64.14 31.59 18.07 104.19 13.22 17.64 8.71 10 ER2b ExonRegion 0 20.10 99.90 5.38 29.84 6.39 111.16 28.67 14.71 16.26 21.64 0.19 18.62 8.54 38.17 3.01 11.14 66.81 61.25 27.34 61.42 15.77 13.68 14.91 11 E2_Da KnownBoundary 0 19.04 70.38 3.67 12.75 15.53 0.00 14.04 6.24 1.79 9.67 0.00 12.00 6.82 23.54 4.45 20.42 49.74 30.72 17.79 47.11 8.96 11.14 0.00 12 E2a_E3a KnownJunction 0 9.85 54.46 3.08 17.25 7.72 110.79 5.87 2.30 4.57 12.60 0.00 0.00 0.00 4.71 0.00 0.00 4.02 6.43 8.75 9.65 0.00 0.00 3.59 13 E2a_E4a KnownJunction 0 0.00 12.30 0.00 11.49 0.00 16.98 0.00 2.55 3.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.38 0.00 0.00 0.00 0.00 14 ER2c ExonRegion 0 28.16 133.35 2.36 14.99 6.00 18.08 23.19 8.13 3.83 8.14 0.00 9.22 5.11 16.88 3.94 4.49 21.07 9.36 9.20 27.39 3.13 10.92 3.31 15 E2_Db NovelBoundary 0 69.94 89.52 1.18 10.35 7.39 12.32 25.92 6.98 4.60 7.58 0.00 6.30 0.00 0.00 0.00 4.19 21.22 3.81 3.67 31.96 0.00 5.08 0.00 16 I2_AR1 ActiveIntronRegion 0 22.04 51.18 2.61 14.12 9.44 31.80 23.28 8.97 3.25 6.95 0.00 11.75 7.43 6.47 4.16 1.35 11.94 10.96 3.50 28.48 1.14 6.17 4.04 17 I2_SR1 SilentIntronRegion 0 18.65 50.25 3.08 12.23 7.45 23.20 18.60 3.33 2.17 2.56 0.00 3.07 3.40 4.82 1.89 1.30 15.99 14.27 7.85 30.18 4.62 1.09 2.85 18 I2_SR2 SilentIntronRegion 0 0.29 25.18 2.19 8.87 0.82 6.78 15.42 6.27 3.47 6.01 0.00 7.92 1.56 1.32 0.00 1.86 3.43 3.28 2.57 19.22 0.44 1.94 0.00 19 I2_AR3 ActiveIntronRegion 0 1.49 7.35 0.47 9.70 0.30 18.09 10.14 6.91 3.76 5.08 0.00 14.17 0.00 4.80 0.00 2.97 2.03 0.42 4.85 24.95 2.40 2.84 0.00 20 I2_AR4 ActiveIntronRegion 0 2.25 20.42 1.54 8.31 0.10 4.46 10.17 2.49 0.90 3.53 0.00 4.92 2.49 2.71 0.32 1.22 3.23 2.11 1.96 20.09 0.79 0.90 1.47 21 I2_SR3 SilentIntronRegion 0 0.95 9.17 0.20 2.95 0.39 3.40 4.11 1.61 1.43 2.74 0.00 7.94 3.72 3.65 0.00 0.97 4.87 2.34 1.85 21.17 1.04 0.64 1.75 22 I2_AR5 ActiveIntronRegion 0 0.22 7.66 0.13 2.62 0.00 1.41 8.31 2.25 1.65 4.13 0.00 5.67 5.73 2.75 0.00 1.24 7.92 3.24 2.32 26.33 1.63 2.40 1.53 23 I2_SR4 SilentIntronRegion 0 0.91 13.30 0.50 3.59 0.67 5.11 4.43 4.07 2.69 6.99 0.00 4.41 3.06 3.12 0.19 1.01 10.69 4.55 2.00 26.58 2.45 1.61 2.95 24 I2_AR6 ActiveIntronRegion 0 0.81 20.24 0.88 2.01 0.00 7.03 6.68 3.21 2.79 7.70 0.00 3.40 6.70 0.19 0.00 0.00 4.01 3.39 6.52 27.61 1.00 0.00 1.82 25 I2_AR7 ActiveIntronRegion 0 1.17 21.50 0.55 7.14 0.22 9.39 6.10 8.59 7.62 13.93 0.00 4.22 2.49 2.46 0.00 1.24 7.70 3.11 2.73 28.16 1.22 0.35 1.83 26 I2_SR5 SilentIntronRegion 0 0.00 0.00 0.00 6.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.78 0.00 0.00 0.00 0.00 0.00 27 I2_AR8 ActiveIntronRegion 0 2.56 36.20 1.00 11.61 1.52 16.86 12.04 14.62 8.84 16.89 0.00 3.01 2.86 4.41 0.00 2.06 10.15 6.17 3.57 26.31 1.48 2.04 3.26 28 I2_SR6 SilentIntronRegion 0 5.84 71.45 0.52 18.43 3.65 35.16 21.55 18.70 8.73 18.42 0.00 0.66 3.34 4.28 0.00 2.09 6.29 4.05 3.28 23.84 0.88 2.16 1.83 29 I2_AR10 ActiveIntronRegion 0 2.79 32.47 1.87 12.76 1.76 22.06 13.43 9.40 2.94 13.98 0.00 5.23 0.00 2.00 0.33 0.48 11.04 7.12 5.19 33.58 2.40 3.06 4.31 30 I2_AR11 ActiveIntronRegion 0 2.01 24.92 0.64 10.83 2.70 10.75 15.64 8.41 2.07 11.07 0.00 3.83 2.07 2.15 1.10 1.60 4.24 5.35 1.71 16.82 1.46 1.12 3.15 31 I2_AR13 ActiveIntronRegion 0 1.91 23.06 0.63 14.67 2.90 33.03 15.29 7.60 4.97 17.22 0.00 3.73 6.16 3.54 0.00 1.92 7.45 4.72 3.29 27.23 1.36 2.06 2.77 32 I2_SR9 SilentIntronRegion 0 2.10 31.53 0.44 10.01 1.33 26.10 10.82 5.48 5.03 9.07 0.00 4.31 4.03 3.44 0.00 0.87 9.41 5.73 1.98 26.91 1.27 2.70 2.88 33 I2_AR14 ActiveIntronRegion 0 0.00 46.43 0.00 13.60 1.43 51.35 19.65 6.07 4.88 7.39 0.00 2.32 2.18 6.48 0.00 1.56 2.59 5.59 1.93 36.37 1.21 1.19 0.00 34 I2_AR15 ActiveIntronRegion 0 2.34 41.26 1.02 9.63 0.64 26.99 12.22 6.96 3.60 9.92 0.00 4.50 4.49 4.39 0.91 0.97 4.32 9.13 2.83 30.13 0.29 0.68 0.78 35 I2_SR10 SilentIntronRegion 0 0.25 39.19 1.07 9.66 0.10 23.69 11.17 4.19 2.23 3.72 0.00 7.42 3.05 2.31 1.00 0.73 8.26 5.49 0.78 26.14 0.82 1.44 1.46 36 I2_AR16 ActiveIntronRegion 0 1.08 47.88 0.86 13.78 1.65 41.86 15.41 4.41 6.67 10.45 0.00 4.03 1.07 5.17 0.00 1.30 7.00 10.20 6.19 35.83 2.76 1.82 3.40 37 I2_SR11 SilentIntronRegion 0 1.94 41.06 1.49 16.55 1.61 38.44 15.23 4.29 5.36 11.35 0.00 4.76 3.52 3.37 0.00 2.20 11.21 12.23 6.82 39.62 5.71 4.31 4.56 38 I2_AR17 ActiveIntronRegion 0 3.27 38.03 0.65 15.13 2.47 52.05 14.99 4.61 5.63 12.01 0.00 3.02 1.48 3.53 0.00 1.53 8.62 9.35 1.01 28.55 1.02 4.29 3.49 39 I2_SR12 SilentIntronRegion 0 5.12 49.15 0.86 20.11 3.79 46.77 15.80 7.63 6.62 10.18 0.00 4.25 6.34 4.60 0.20 2.18 9.91 7.84 1.57 32.63 1.40 3.35 5.93 40 I2_AR18 ActiveIntronRegion 0 9.95 106.76 0.57 33.75 3.93 106.42 28.96 14.55 11.04 11.97 0.00 4.98 6.71 9.33 0.00 1.45 17.72 21.91 8.42 42.23 6.59 8.43 10.64 41 I2_AR19 ActiveIntronRegion 0 7.41 81.02 0.87 33.64 8.06 121.09 25.72 9.90 8.68 18.17 0.00 5.60 4.03 5.41 0.09 2.33 11.75 14.09 7.42 34.05 1.94 5.23 4.13 42 I2_SR14 SilentIntronRegion 0 16.15 123.51 1.23 48.27 4.44 213.49 36.83 8.92 6.66 24.90 0.00 15.84 1.23 3.63 0.00 2.97 22.50 20.42 18.78 42.33 4.23 2.91 5.26 43 I2_AR20 ActiveIntronRegion 0 10.01 127.65 6.46 44.29 7.33 142.62 38.62 4.85 9.74 30.22 0.00 2.56 2.40 8.32 0.00 2.84 19.81 19.44 8.22 49.25 8.71 12.76 8.14 44 I2_AR21 ActiveIntronRegion 0 13.89 181.61 3.44 67.41 11.21 163.72 27.20 19.71 9.90 31.10 0.00 2.80 2.98 4.08 1.15 1.88 9.06 10.69 7.79 31.49 1.99 7.27 4.50 45 I2_AR40 ActiveIntronRegion 0 0.43 32.72 0.93 17.33 2.34 15.91 3.59 4.80 2.55 2.43 0.00 0.00 0.00 0.00 0.00 0.00 0.67 1.31 1.30 1.74 0.00 0.00 0.00 46 I2_SR29 SilentIntronRegion 0 1.73 21.89 0.59 18.43 0.37 11.43 1.42 2.76 2.26 2.73 0.00 0.00 0.07 0.00 0.00 0.04 0.53 0.46 1.82 0.62 0.00 0.06 0.04 47 ER3a ExonRegion 0 1.47 41.87 1.18 9.07 1.73 83.56 1.44 4.83 4.03 9.19 0.00 0.00 0.00 0.51 0.00 0.00 0.39 7.83 5.03 2.96 3.31 0.25 2.91 48 E3a_E4a KnownJunction 0 0.00 39.01 1.21 9.26 0.00 74.62 2.25 2.55 1.27 5.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.19 13.08 5.88 0.00 2.63 3.50 49 ER4a ExonRegion 0 0.59 40.71 1.38 15.44 0.00 90.17 2.35 3.92 10.05 6.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.51 4.48 4.81 4.45 0.40 1.63 50 E4a_E5a KnownJunction 0 0.00 27.63 0.00 19.64 0.00 109.60 3.80 3.86 14.12 7.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.05 4.52 5.82 0.00 0.00 0.00 51 ER5a ExonRegion 0 2.33 53.23 1.25 22.70 0.47 123.46 2.94 2.98 10.61 6.25 0.00 0.00 0.00 4.02 0.00 0.43 3.60 10.70 3.33 5.21 5.41 1.14 1.46 52 E5_Da KnownBoundary 0 2.89 78.01 0.00 26.60 3.90 236.28 1.81 5.38 3.15 8.68 0.00 0.00 0.00 4.71 0.00 0.00 0.00 9.12 0.00 3.00 0.00 0.00 8.11 53 ER5b ExonRegion 0 4.91 91.18 0.85 43.72 1.31 134.76 2.34 5.95 10.75 9.57 0.00 0.00 0.00 1.66 0.00 0.29 1.10 1.93 2.11 2.66 0.66 1.04 0.52 54 E5_Db KnownBoundary 0 0.00 10.46 0.00 6.93 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 ER5c ExonRegion 0 6.10 123.46 1.97 35.87 0.00 40.67 1.91 4.65 4.33 8.66 0.00 0.00 0.00 1.17 1.11 0.00 0.59 0.67 0.57 0.38 0.00 0.00 0.00