Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KIAA1704 Gene 0 48.72 102.17 49.50 75.17 119.38 66.21 90.24 68.23 61.48 73.53 49.63 142.92 79.19 58.64 46.90 47.81 51.54 31.22 36.62 58.90 24.08 44.59 30.69 2 379151 Transcript 0 78.52 52.36 18.44 17.02 69.63 109.10 83.64 20.51 18.24 34.01 81.34 50.10 27.62 74.20 72.08 102.26 78.96 44.70 40.88 40.66 53.68 35.05 42.03 3 479068 Transcript 0 10.22 11.21 2.48 4.81 6.87 9.26 17.12 4.08 5.99 5.81 14.18 12.25 16.51 11.02 20.95 23.66 22.82 5.07 9.13 20.56 11.92 5.49 13.73 4 361481 Transcript 0 3.23 11.35 3.73 12.73 13.31 2.84 6.88 4.57 3.96 6.93 3.41 23.93 4.80 9.88 3.66 7.07 5.50 4.56 4.25 5.79 2.73 2.93 3.43 5 497558 Transcript 0 25.82 33.35 22.93 31.91 43.63 41.06 53.74 25.68 43.33 29.37 17.82 36.55 41.87 37.21 41.27 43.24 31.07 58.78 54.42 49.81 20.59 30.01 43.82 6 361121 Transcript 0 160.62 156.72 280.16 293.24 124.92 81.29 161.48 331.71 262.14 299.26 91.34 43.96 57.71 39.29 47.72 152.91 115.85 285.68 127.25 205.08 137.11 62.43 149.90 7 357537 Transcript 0 2.10 6.34 4.18 4.66 12.37 11.85 13.42 8.05 4.60 7.23 1.64 7.51 2.79 4.92 4.44 1.57 3.79 2.46 0.41 1.57 2.72 5.23 2.30 8 473119 Transcript 0 0.00 0.00 0.00 0.00 0.00 1.83 0.00 1.73 0.00 0.00 1.93 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 475139 Transcript 0 39.63 44.66 24.72 57.81 82.67 41.16 62.03 38.92 33.89 39.03 10.52 26.31 17.53 13.34 18.35 11.22 9.72 11.00 26.08 19.79 3.15 22.59 9.27 10 ER1a ExonRegion 1 139.86 87.70 15.34 16.01 103.06 195.61 136.62 24.82 26.67 43.39 148.74 11.84 9.89 123.71 114.92 191.05 148.85 86.41 74.06 65.92 105.81 41.57 79.84 11 E1_Ab KnownBoundary 1 139.21 80.58 14.58 14.45 123.68 200.79 146.05 32.00 30.99 44.81 101.87 20.26 6.33 101.60 17.18 129.28 100.98 93.77 49.04 64.43 53.62 32.70 65.47 12 E1_Ac KnownBoundary 0 85.50 38.74 17.62 10.75 29.29 77.00 50.30 14.46 17.07 20.82 18.53 6.60 0.00 12.66 15.45 47.25 49.74 62.43 16.85 80.54 19.15 14.27 39.10 13 ER1b ExonRegion 1 153.66 89.88 31.86 29.98 107.03 207.59 136.90 38.03 45.95 64.23 97.42 46.76 9.38 118.24 62.67 145.04 118.17 148.93 45.87 111.91 65.67 34.17 80.46 14 ER1c ExonRegion 1 45.92 29.90 20.66 19.80 31.69 46.93 32.87 19.42 29.79 46.32 83.34 31.02 20.45 47.18 23.95 54.18 103.90 57.87 26.97 51.19 67.61 13.54 23.35 15 E1a_E2a KnownJunction 0 0.00 0.00 0.00 3.83 0.00 0.00 4.50 0.00 3.47 3.73 9.74 6.30 0.00 4.71 4.45 11.96 8.04 0.00 0.00 0.00 5.99 0.00 0.00 16 E1a_E3a KnownJunction 1 15.04 37.56 26.26 26.84 4.33 18.28 17.09 28.26 35.13 76.45 176.83 6.00 20.45 110.66 69.10 101.51 207.76 43.32 66.45 96.45 124.85 36.62 40.21 17 E1a_E6a NovelJunction 0 0.00 0.00 0.00 1.80 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.53 0.00 0.00 18 I1_AR2 ActiveIntronRegion 0 11.14 13.17 7.39 12.60 4.69 2.23 9.29 20.85 12.17 17.99 2.35 11.61 10.12 1.75 4.81 18.85 8.91 12.26 15.90 20.10 5.35 1.69 8.32 19 E2_Aa NovelBoundary 0 9.71 34.73 19.81 3.00 19.02 17.32 34.71 10.35 5.73 4.06 16.16 6.30 41.07 2.30 0.00 12.65 8.70 17.53 12.14 20.33 11.12 7.90 10.76 20 ER2a ExonRegion 1 20.45 22.42 4.96 5.79 13.73 18.52 29.74 8.16 8.50 7.90 18.62 18.20 33.02 17.34 37.45 35.36 37.59 10.14 18.26 41.11 17.84 10.97 27.46 21 E2_Da NovelBoundary 0 3.48 17.76 3.05 9.46 0.00 5.79 13.34 7.11 15.28 12.73 2.58 6.30 19.64 21.25 14.09 24.61 13.84 4.15 0.00 17.96 5.75 5.14 7.94 22 I2 Intron 0 4.00 4.80 4.31 1.92 3.79 0.00 6.88 3.65 4.33 4.04 4.56 5.05 7.69 11.55 11.77 14.04 7.79 3.47 3.01 11.05 2.08 0.00 5.55 23 I2_SR1 SilentIntronRegion 0 4.04 4.85 4.35 1.92 3.83 0.00 6.94 3.68 4.37 4.06 4.61 5.10 7.76 11.66 11.85 14.17 7.84 3.51 3.04 11.16 2.10 0.00 5.60 24 E3_Aa NovelBoundary 0 25.78 15.26 18.75 22.08 12.05 11.98 10.42 10.06 7.12 5.21 0.00 25.06 20.29 9.18 8.90 25.21 4.49 8.71 13.74 3.07 2.90 9.25 13.06 25 ER3a ExonRegion 0 44.96 94.25 54.75 68.92 94.38 66.61 87.01 58.31 77.27 77.55 152.26 129.36 96.59 161.07 118.38 176.76 138.19 107.56 76.52 120.65 61.52 64.35 86.66 26 E3a_E5a KnownJunction 0 59.64 129.25 83.91 122.26 295.50 272.68 332.99 77.22 87.99 76.53 140.35 245.63 144.96 111.66 104.33 104.93 125.85 90.41 64.28 131.09 72.53 60.99 61.12 27 E4_Aa NovelBoundary 0 284.42 133.79 55.00 49.48 198.90 74.22 154.61 45.76 44.99 46.39 30.27 46.52 71.91 21.43 58.10 99.55 85.09 18.28 58.35 43.53 27.00 50.89 121.22 28 ER4a ExonRegion 0 3.27 8.35 0.45 2.90 4.95 3.53 8.48 1.94 5.29 1.48 0.01 2.26 1.56 0.10 2.57 1.22 1.93 1.65 1.23 1.90 2.60 0.81 2.80 29 E4_Da NovelBoundary 0 94.54 52.16 154.19 162.78 80.65 49.52 97.91 145.48 148.87 118.54 17.00 6.75 24.51 39.91 26.45 49.65 74.99 107.24 34.07 74.02 31.51 25.17 62.83 30 E4a_E5a KnownJunction 0 0.00 10.66 4.17 9.02 11.71 12.89 16.87 7.64 1.68 2.36 0.00 7.50 0.00 2.30 0.00 0.00 4.77 5.72 0.00 2.81 5.56 0.00 4.10 31 ER5a ExonRegion 0 49.55 143.89 100.59 107.99 175.42 158.46 159.91 87.08 106.58 100.29 197.88 353.45 205.12 198.73 129.59 134.10 186.89 91.21 74.67 111.64 83.22 74.11 84.90 32 E5a_E6a KnownJunction 0 93.57 159.71 137.55 107.31 98.98 44.75 60.24 129.38 127.72 148.79 223.58 379.62 109.25 304.14 188.02 124.16 174.94 73.25 93.18 149.12 105.64 116.34 86.56 33 ER6a ExonRegion 0 106.27 161.08 117.32 120.51 103.19 56.52 85.76 106.39 103.71 113.66 170.37 353.54 185.56 171.39 129.63 102.49 206.09 70.21 77.76 137.27 97.07 82.85 64.81 34 E6a_E7a KnownJunction 0 0.00 8.95 0.00 10.02 12.22 0.00 1.90 0.00 1.50 4.24 0.00 7.65 0.00 7.30 0.00 3.67 0.00 2.07 4.71 2.88 0.00 0.00 0.00 35 E6a_E7b KnownJunction 0 138.25 215.42 104.43 109.78 125.38 71.49 101.18 92.46 92.27 98.31 146.93 398.08 192.84 136.21 148.09 145.52 139.69 73.37 103.06 115.56 56.71 96.32 67.69 36 ER7a ExonRegion 0 6.45 13.75 7.47 15.45 14.40 5.68 11.85 9.14 6.41 9.61 6.81 40.20 9.60 12.45 7.32 10.47 11.00 7.04 3.79 8.71 5.46 5.85 6.85 37 ER7b ExonRegion 0 154.36 204.37 121.86 106.99 194.62 94.57 195.96 116.24 110.46 130.97 159.06 481.53 214.76 193.09 143.89 165.90 180.04 66.37 81.71 139.60 76.76 100.59 90.51 38 E7_Da KnownBoundary 0 350.88 327.64 156.23 121.70 364.60 221.35 450.64 151.89 108.27 130.09 137.09 726.84 360.20 312.14 204.96 155.94 297.99 53.18 82.54 194.63 96.50 129.33 97.06 39 ER7c ExonRegion 0 163.44 164.89 119.90 125.69 198.96 99.58 199.20 132.89 103.92 121.65 154.44 467.66 225.28 211.03 147.08 150.12 203.87 55.96 67.05 132.74 59.35 87.47 66.90 40 E7b_E8a KnownJunction 0 125.80 134.06 112.77 168.61 115.96 67.35 134.21 131.40 115.71 145.32 184.89 447.00 193.98 156.28 155.26 134.49 147.92 55.92 82.17 110.32 71.35 65.95 68.12 41 ER8a ExonRegion 0 70.06 154.29 92.69 101.22 128.53 61.95 112.63 94.42 94.53 129.58 153.19 396.45 138.40 140.43 117.70 122.92 152.76 50.00 52.65 131.49 55.72 79.40 47.20 42 E8a_E9a KnownJunction 0 83.87 150.63 83.05 113.64 155.52 80.18 169.23 83.96 79.17 104.73 114.71 297.10 99.51 146.10 132.39 117.15 100.89 32.25 41.04 91.66 26.75 59.95 44.99 43 ER9a ExonRegion 0 58.64 104.92 78.50 92.69 159.25 62.57 136.66 92.39 91.34 117.90 116.11 406.49 173.29 156.23 128.12 105.23 115.76 43.77 49.42 119.43 33.61 73.85 50.61 44 E9a_E10a KnownJunction 0 63.12 91.37 92.78 99.72 155.18 79.44 151.48 120.63 103.73 111.88 110.87 458.85 151.45 106.72 162.56 77.42 115.75 37.10 13.27 113.07 17.98 74.46 56.34 45 ER10a ExonRegion 0 82.47 134.59 71.36 97.78 139.93 79.62 127.78 104.43 84.38 127.89 140.73 421.07 162.52 114.63 93.46 73.33 97.75 27.49 29.29 94.97 19.08 97.73 36.47 46 E10_Da KnownBoundary 0 36.75 13.48 36.46 20.54 54.58 15.50 42.48 24.56 9.09 36.29 53.70 78.48 42.21 30.26 34.74 15.12 20.76 0.00 29.74 23.14 7.91 38.09 4.35 47 E10a_E11a KnownJunction 0 68.75 204.31 25.93 47.31 123.94 53.66 151.61 69.25 76.62 94.96 55.07 150.95 67.69 56.74 22.99 21.96 38.71 8.21 8.85 86.03 17.05 46.23 23.39 48 E10a_E13b KnownJunction 0 3.04 0.00 7.92 2.06 20.46 19.14 14.93 14.58 6.83 17.84 4.90 12.75 6.82 12.36 10.75 3.50 4.68 0.00 0.00 0.00 0.00 14.88 0.00 49 ER10b ExonRegion 0 17.19 17.02 21.54 18.02 36.20 22.58 30.66 16.20 9.80 24.63 13.94 88.36 45.35 24.68 29.25 13.46 9.06 2.99 7.69 15.40 1.55 28.52 4.21 50 E10_Db NovelBoundary 0 7.33 12.37 8.84 13.68 51.36 19.31 30.78 15.69 11.46 13.67 7.53 61.97 20.45 4.59 13.35 8.72 18.70 0.00 13.27 17.39 2.78 2.76 7.85 51 I10 Intron 0 6.82 18.24 10.23 13.37 20.62 14.65 21.15 7.94 8.25 12.45 6.23 34.72 17.39 11.54 7.77 10.41 8.32 5.93 4.91 13.12 2.78 6.42 7.82 52 I10_AR1 ActiveIntronRegion 0 5.16 10.92 10.69 12.39 28.08 21.03 24.24 10.06 5.84 13.34 8.96 48.97 19.05 13.87 7.58 15.23 12.89 7.19 6.22 15.58 3.23 6.10 10.75 53 I10_SR1 SilentIntronRegion 0 9.17 28.47 9.73 14.89 10.70 6.11 17.21 5.15 11.66 11.39 2.58 15.68 15.36 8.50 8.13 3.96 2.20 4.29 3.19 9.93 2.20 6.95 3.92 54 E11_Aa NovelBoundary 0 20.30 104.52 23.03 33.56 38.29 4.88 23.14 30.52 19.10 22.67 2.53 18.76 35.06 14.30 10.51 6.66 0.00 4.35 4.42 23.97 3.09 16.96 0.00 55 ER11a ExonRegion 0 38.25 134.88 46.15 81.00 130.47 64.92 101.98 69.37 67.74 80.31 35.16 178.71 109.47 58.17 33.29 38.38 35.72 21.96 29.93 58.36 20.90 49.42 27.61 56 E11_Da KnownBoundary 1 1450.18 1162.95 1442.02 1542.29 924.53 629.52 1417.00 1573.05 1380.02 1297.65 457.59 143.15 262.48 173.52 329.19 898.40 1055.35 1575.15 713.71 1291.00 797.24 478.17 938.91 57 E11a_E11b KnownJunction 0 51.56 87.48 117.06 123.33 62.22 47.25 85.81 97.96 93.55 106.67 90.97 28.06 37.17 48.74 41.78 50.93 63.30 81.21 92.80 98.88 106.81 44.70 44.47 58 ER11b ExonRegion 0 12.26 14.00 13.49 19.76 37.17 38.25 37.22 17.36 29.16 18.20 18.79 39.43 44.45 47.54 36.74 30.42 27.89 40.91 51.51 30.73 19.35 20.17 33.83 59 E11_Ab KnownBoundary 1 10.08 15.79 46.98 44.38 32.60 20.95 41.87 48.80 45.37 62.24 54.01 34.96 25.49 111.66 29.54 24.44 27.12 31.67 112.19 19.81 68.82 14.57 29.71 60 ER11c ExonRegion 0 3.97 16.54 36.35 33.32 44.76 50.30 44.51 38.52 51.14 45.86 33.85 48.33 26.18 44.18 18.23 21.76 25.37 36.95 54.96 20.83 27.48 26.84 22.25 61 E11_Db KnownBoundary 1 617.59 594.96 558.44 560.43 519.95 490.17 663.85 621.61 534.31 448.89 143.09 113.59 220.44 105.72 218.18 585.15 429.08 594.94 328.29 632.78 288.07 138.33 418.71 62 E11b_E11c KnownJunction 0 269.68 225.95 443.27 463.14 187.61 115.33 237.15 565.47 430.72 491.84 91.71 59.87 78.24 29.84 53.65 254.89 168.40 490.14 161.70 311.28 167.42 80.15 255.32 63 ER11d ExonRegion 0 39.39 52.69 32.37 44.05 50.09 43.86 70.25 34.01 57.51 40.55 16.84 33.68 39.28 26.88 45.80 56.06 34.25 76.65 57.34 68.88 21.84 39.85 53.81 64 E11_Ac KnownBoundary 1 364.58 332.05 301.26 242.49 269.61 224.87 360.90 298.20 290.01 261.66 58.70 91.08 42.04 56.92 126.21 160.47 222.25 351.44 178.73 254.84 156.73 95.03 215.97 65 ER11e ExonRegion 0 32.73 72.31 36.68 41.26 78.03 48.68 73.31 49.80 47.85 45.41 24.98 89.98 71.39 52.93 76.33 43.73 44.24 33.94 45.19 45.39 22.76 40.43 32.35 66 E11_Ad KnownBoundary 0 68.75 130.63 67.53 96.22 180.48 43.44 154.83 110.69 90.71 91.04 28.43 93.48 99.51 28.02 15.20 20.34 21.79 32.75 50.92 48.83 18.90 74.70 27.74 67 ER11f ExonRegion 0 62.06 179.56 69.77 124.03 221.52 105.90 130.05 111.81 91.20 103.65 25.86 100.13 66.64 33.88 25.97 29.61 25.50 30.65 36.78 60.50 13.62 41.84 24.46 68 E11_Dc NovelBoundary 0 34.38 42.95 113.07 147.37 236.42 61.04 117.69 96.15 91.29 91.71 12.37 100.08 47.40 45.09 35.97 30.25 20.20 25.58 64.28 71.40 11.24 21.68 39.44 69 E11c_E13b KnownJunction 0 6.89 0.00 6.45 9.29 11.88 2.33 0.00 13.39 4.28 4.43 0.00 11.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70 I11 Intron 0 27.87 47.51 32.44 89.55 83.64 43.44 50.99 72.04 41.79 59.05 22.90 45.95 33.50 28.70 26.73 30.32 26.07 19.36 40.88 30.10 11.60 28.11 16.43 71 I11_AR1 ActiveIntronRegion 0 28.05 47.80 32.66 90.13 84.18 43.73 51.32 72.49 42.06 59.42 23.04 46.25 33.71 28.89 26.90 30.51 26.24 19.49 41.14 30.28 11.68 28.29 16.53 72 E12_Aa NovelBoundary 0 39.56 52.49 12.12 20.38 197.20 98.35 120.70 3.45 11.69 9.54 17.00 37.21 18.99 15.89 9.52 11.71 4.02 7.54 12.52 8.63 0.00 13.47 22.71 73 ER12a ExonRegion 0 41.98 54.74 12.29 37.37 102.31 50.85 104.94 34.67 22.82 21.03 10.27 28.14 16.42 23.21 26.66 17.89 14.03 12.06 46.25 15.07 3.89 23.83 10.40 74 E12_Da NovelBoundary 0 3.63 32.69 9.14 17.71 24.70 16.75 15.15 7.97 15.62 9.78 4.95 25.06 6.82 2.41 17.43 0.00 11.97 7.13 3.95 23.27 3.03 10.59 10.07 75 E12a_E13a KnownJunction 0 0.00 0.00 9.17 21.84 0.00 0.00 4.33 4.97 20.83 15.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 2.94 0.00 76 E13_Aa NovelBoundary 1 1914.12 1954.59 6971.96 7318.85 1691.60 1237.81 1952.08 7432.10 7464.94 5940.25 669.43 136.99 235.54 207.90 773.47 2007.93 1431.04 10389.13 1825.93 1917.26 1010.12 852.62 1952.08 77 ER13a ExonRegion 0 76.92 79.23 52.71 114.23 145.69 72.63 76.81 77.13 58.02 80.90 21.28 50.78 36.17 16.80 28.38 15.77 15.14 18.42 31.99 44.30 5.55 41.00 17.40 78 E13_Ab KnownBoundary 0 33.04 46.57 87.37 159.92 246.52 49.97 87.88 138.95 97.13 123.65 11.48 109.54 67.04 14.77 40.30 34.44 16.55 14.92 38.31 70.31 3.15 74.64 19.21 79 ER13b ExonRegion 0 57.60 53.79 58.79 101.65 121.88 57.22 61.43 98.87 56.93 89.17 21.29 91.40 34.69 19.48 26.06 20.29 29.51 14.78 26.13 39.81 7.74 43.66 18.43 80 ER13c ExonRegion 0 8.89 10.17 3.68 7.36 7.49 5.13 11.39 7.61 3.95 3.90 5.03 11.26 0.00 4.22 0.00 0.00 0.00 0.74 0.00 4.26 0.00 3.75 5.29 81 ER13d ExonRegion 0 0.00 2.71 0.00 1.82 0.00 3.06 2.65 4.61 0.82 0.76 1.93 7.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 82 ER13e ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.83 0.00 1.73 0.00 0.00 1.93 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83 IG10_AR1 ActiveIntergenicRegion 0 10.64 16.58 7.54 16.58 27.97 4.47 20.37 24.06 20.39 10.74 4.94 13.80 15.46 4.49 5.50 6.81 4.88 7.50 16.34 10.03 1.48 2.22 1.70