Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 EPSTI1 Gene 0 232.55 2.83 8.11 11.81 90.35 10.84 15.20 67.75 29.47 11.17 84.30 172.22 92.82 253.25 233.51 155.29 75.47 0.00 0.10 0.00 28.42 31.57 16.12 2 398762 Transcript 1 9.97 0.00 0.51 0.06 3.68 5.65 1.60 1.22 0.67 0.14 4.83 2.35 0.78 44.32 13.30 15.11 7.15 0.00 0.00 0.00 3.58 1.30 1.71 3 313640 Transcript 0 82.08 0.00 0.02 1.49 22.61 0.00 1.78 9.92 3.57 5.35 17.56 71.40 27.07 83.99 89.92 49.24 36.57 0.00 0.00 0.00 0.14 4.33 3.59 4 313624 Transcript 0 281.22 8.55 13.65 16.46 106.50 14.21 20.66 79.98 37.97 14.11 114.03 287.63 122.20 362.23 355.39 220.17 125.44 0.00 0.07 0.00 43.87 41.99 17.28 5 476830 Transcript 0 7.35 0.00 0.00 0.00 1.62 0.00 0.40 0.00 0.55 0.26 4.79 6.52 7.08 2.88 7.41 5.91 6.70 0.00 0.00 0.00 1.34 0.63 0.02 6 IG43_SR1 SilentIntergenicRegion 0 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 8.96 3.72 0.00 3.15 0.78 4.52 0.84 0.00 0.00 0.00 0.00 0.00 0.00 7 IG43_AR2 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.52 6.37 0.00 2.09 0.81 4.23 0.98 0.00 0.00 0.00 0.00 0.00 0.00 8 ER1a ExonRegion 1 19.58 0.00 1.02 0.11 6.91 11.31 3.20 1.30 1.34 0.10 8.38 3.97 0.00 85.13 23.21 28.24 11.55 0.00 0.00 0.00 7.16 2.60 3.43 9 ER1b ExonRegion 1 97.15 0.00 2.06 1.36 76.42 29.63 11.09 6.26 5.68 2.89 37.50 2.68 0.00 346.00 178.14 163.59 47.53 0.00 0.00 0.00 50.91 16.63 27.96 10 E1_Ac KnownBoundary 1 100.76 0.00 2.96 1.86 73.09 14.31 10.25 21.36 9.81 6.88 26.74 6.15 0.00 81.64 138.82 164.23 30.20 0.00 0.00 0.00 56.09 10.84 31.76 11 ER1c ExonRegion 1 21.00 0.51 4.53 3.49 10.45 2.02 2.29 17.12 8.47 4.35 59.68 5.10 17.00 243.94 144.01 130.30 73.96 0.00 0.00 0.00 40.44 14.53 17.42 12 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.18 0.00 0.00 4.11 0.00 0.00 0.00 0.00 0.00 0.00 13 E1a_E3a KnownJunction 0 36.45 0.00 4.82 6.73 79.63 27.43 6.01 29.08 27.26 3.09 89.08 25.21 52.27 213.32 189.01 337.77 93.50 0.00 0.00 0.00 27.92 33.86 43.88 14 I1_AR1 ActiveIntronRegion 0 19.30 0.00 0.62 2.73 8.09 1.88 2.55 13.21 5.94 0.00 10.72 16.02 11.43 9.16 24.10 31.12 10.73 0.00 0.00 0.00 5.07 0.36 3.16 15 I1_SR1 SilentIntronRegion 0 20.52 0.00 0.84 2.01 5.07 0.26 0.67 7.07 3.52 0.21 13.16 17.58 23.45 11.82 27.38 21.61 16.97 0.00 0.00 0.00 3.52 0.00 2.24 16 I1_AR2 ActiveIntronRegion 1 65.67 0.00 0.00 2.71 13.13 0.87 0.54 1.61 1.10 0.85 5.82 26.68 35.11 7.86 52.07 21.69 7.98 0.00 0.00 0.00 4.56 0.00 2.02 17 E2_Aa NovelBoundary 1 61.86 0.00 6.50 13.45 25.21 0.00 0.00 23.21 15.51 2.42 9.69 30.31 61.68 22.01 55.13 38.62 31.79 0.00 0.00 0.00 15.07 0.00 4.18 18 ER2a ExonRegion 1 29.40 0.00 0.00 0.00 6.50 0.00 1.61 0.00 2.21 1.04 9.00 26.08 28.31 9.36 29.63 23.64 22.67 0.00 0.00 0.00 5.35 2.53 0.07 19 E2_Da NovelBoundary 0 106.61 0.00 0.00 5.43 19.69 0.00 10.64 21.85 10.88 1.53 6.74 31.96 6.17 14.66 41.04 46.14 8.51 0.00 0.00 0.00 5.68 0.00 4.27 20 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 I2 Intron 1 31.41 0.32 0.69 2.83 11.87 0.83 4.25 11.08 4.31 1.05 7.36 54.84 45.60 23.77 29.29 37.53 20.11 0.00 0.00 0.01 2.29 3.20 2.46 22 I2_SR1 SilentIntronRegion 0 46.64 0.46 1.19 4.05 17.67 0.79 4.47 16.24 5.29 1.61 6.55 50.07 47.57 6.33 27.56 20.36 10.05 0.00 0.00 0.00 1.61 2.17 2.71 23 I2_AR1 ActiveIntronRegion 0 36.19 0.60 0.36 1.81 6.61 0.91 4.58 6.36 3.64 0.34 2.48 30.51 30.05 5.12 19.13 8.81 4.89 0.00 0.00 0.00 0.87 1.85 0.58 24 I2_SR2 SilentIntronRegion 0 17.51 0.18 0.19 1.70 7.50 0.82 4.62 6.64 3.50 0.72 8.34 69.89 55.02 44.01 33.32 50.02 30.82 0.00 0.00 0.03 2.15 4.40 2.29 25 I2_AR2 ActiveIntronRegion 0 10.19 0.08 0.29 1.72 4.20 1.03 2.35 5.79 3.19 0.14 9.89 43.25 20.10 42.89 29.60 80.85 35.73 0.00 0.00 0.00 5.85 4.41 2.84 26 E3_Aa NovelBoundary 1 13.41 0.00 1.83 0.00 4.16 5.45 0.00 13.64 1.50 0.00 2.47 42.01 41.23 50.86 57.11 42.64 13.84 0.00 0.00 0.00 5.37 3.12 0.00 27 ER3a ExonRegion 0 58.94 0.52 1.77 5.66 134.65 35.53 8.21 32.40 27.36 7.85 132.62 54.67 69.00 345.66 183.71 215.86 96.17 0.00 0.00 0.00 52.85 27.51 21.65 28 E3a_E4a KnownJunction 0 148.32 3.03 1.33 5.86 134.30 26.29 20.80 36.39 29.14 13.00 146.67 65.57 52.43 332.69 201.37 146.20 118.37 0.00 0.00 0.00 67.46 11.21 12.80 29 I3 Intron 0 27.43 0.16 0.14 1.72 3.10 0.00 2.86 3.68 1.78 0.59 5.15 22.63 19.32 16.96 12.12 25.45 10.57 0.11 0.00 0.00 3.82 2.57 3.06 30 I3_AR1 ActiveIntronRegion 0 27.48 0.16 0.14 1.73 3.10 0.00 2.86 3.68 1.78 0.59 5.15 22.66 19.35 16.99 12.14 25.49 10.59 0.11 0.00 0.00 3.83 2.58 3.06 31 ER4a ExonRegion 0 114.14 1.86 3.78 5.05 80.72 23.05 10.43 51.05 30.64 12.29 135.72 124.01 69.51 443.46 286.84 205.01 146.97 0.00 0.00 0.00 47.17 13.20 17.17 32 E4a_E5a KnownJunction 0 181.74 5.85 6.53 7.46 48.64 26.01 13.16 74.26 34.87 16.47 146.93 114.94 96.26 431.05 343.66 250.45 114.17 0.00 0.00 0.00 48.68 17.21 21.60 33 ER5a ExonRegion 0 224.41 3.08 7.45 10.17 38.94 12.91 15.58 72.88 35.27 12.94 180.20 169.02 120.74 447.18 344.03 260.46 171.25 0.00 0.00 0.00 47.68 44.65 15.68 34 E5a_E6a KnownJunction 0 294.87 0.00 15.08 17.75 64.43 22.88 31.18 94.68 54.05 18.05 215.00 209.17 166.55 509.69 381.98 315.22 184.20 0.00 0.00 0.00 29.10 48.68 20.40 35 ER6a ExonRegion 0 298.13 3.70 16.75 15.35 98.21 31.70 36.05 103.65 54.46 19.91 213.06 384.09 201.84 584.61 463.51 316.74 209.25 0.00 0.00 0.00 44.44 40.93 23.32 36 E6a_E7a KnownJunction 0 267.08 0.00 12.83 12.72 122.07 21.29 49.77 121.25 69.04 27.99 171.46 409.18 237.48 658.02 624.39 361.70 243.38 0.00 0.00 0.00 46.27 42.99 17.76 37 ER7a ExonRegion 0 248.12 4.42 14.67 27.37 207.44 24.56 29.45 122.60 60.65 22.88 213.53 409.08 303.90 694.51 492.62 386.06 198.77 0.00 0.00 0.00 48.18 43.13 19.84 38 E7a_E8a KnownJunction 0 301.31 9.47 17.89 40.99 192.44 9.48 20.31 140.06 56.28 25.12 196.37 329.36 375.14 758.38 663.58 378.96 173.45 0.00 0.00 0.00 39.35 51.44 30.90 39 E7a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 I7_AR2 ActiveIntronRegion 0 55.34 0.00 0.48 1.06 5.57 1.67 2.58 8.04 2.63 0.22 1.26 11.40 13.21 2.15 7.90 8.12 2.15 0.72 0.00 0.00 3.73 0.27 1.53 41 ER8a ExonRegion 1 222.94 11.18 15.52 39.52 138.25 9.47 15.00 134.82 53.73 22.17 185.88 386.77 375.98 728.96 632.47 358.64 172.20 0.00 0.00 0.00 37.10 51.05 23.49 42 ER8b ExonRegion 0 319.62 11.05 10.17 29.95 96.72 14.42 26.86 114.82 63.48 25.88 168.25 539.36 271.33 669.49 582.66 361.92 175.36 0.00 0.00 0.00 53.21 54.01 21.99 43 E8a_E9a KnownJunction 1 81.27 0.00 3.67 9.92 8.15 0.00 15.28 19.35 12.59 4.38 31.17 81.78 14.61 59.16 57.61 49.05 20.85 0.00 0.00 0.00 8.15 0.00 0.00 44 E8a_E10a KnownJunction 0 249.60 12.04 11.47 21.61 105.35 17.89 32.42 90.28 44.24 18.35 182.99 456.15 139.11 574.79 542.31 302.06 173.73 0.00 0.00 0.00 56.28 39.56 3.67 45 ER9a ExonRegion 0 64.59 0.00 2.45 12.22 18.36 6.07 9.04 19.07 15.97 3.84 17.86 49.56 36.71 73.76 58.13 36.08 18.21 0.00 0.00 0.00 10.79 4.45 3.54 46 E9b_E10a KnownJunction 1 80.98 0.00 0.00 12.62 33.53 13.86 0.00 10.56 13.43 1.53 9.16 24.61 48.70 85.59 46.48 36.74 17.58 0.00 0.00 0.00 14.52 9.37 7.43 47 ER9b ExonRegion 1 68.26 0.00 3.68 11.58 24.08 11.00 7.28 21.17 18.53 4.30 12.08 28.14 50.42 92.98 52.22 29.72 19.81 0.00 0.00 0.00 11.02 8.33 8.81 48 ER10a ExonRegion 0 371.98 4.14 12.55 32.00 221.26 34.75 38.66 126.28 59.15 29.75 202.54 563.76 285.31 795.43 587.92 448.83 153.92 0.00 0.00 0.00 61.63 61.86 35.94 49 E10a_E11a KnownJunction 1 717.98 9.08 21.76 38.76 438.96 37.31 43.81 165.49 88.48 34.73 212.16 635.31 529.19 991.47 1078.93 626.76 178.87 0.00 0.00 0.00 88.71 75.68 65.22 50 E11_Aa NovelBoundary 1 24.97 0.00 0.00 0.00 7.89 0.00 2.16 7.11 4.08 0.00 7.79 24.61 49.02 4.94 14.09 3.85 3.55 0.00 0.00 0.00 0.00 0.00 0.00 51 ER11a ExonRegion 1 432.68 7.61 22.31 27.79 220.28 38.21 35.89 145.00 75.93 26.91 157.95 477.41 349.91 775.23 743.62 534.02 188.86 0.00 0.00 0.00 83.80 73.04 43.34 52 E11_Da NovelBoundary 1 2.82 0.00 0.00 0.00 0.00 0.00 0.00 2.55 5.06 4.35 4.47 50.87 46.75 17.72 0.00 8.12 7.67 0.00 0.00 0.00 5.56 8.27 0.00 53 E11a_E12a KnownJunction 0 335.69 6.45 16.23 21.38 170.03 28.68 39.13 135.42 63.40 32.40 161.09 376.47 279.53 598.51 592.13 515.76 218.61 0.00 0.00 0.00 60.23 70.91 42.25 54 E11a_E15a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 2.68 18.46 0.00 9.71 10.51 0.00 3.83 0.00 0.00 0.00 0.00 0.00 0.00 55 I11 Intron 0 8.07 0.03 0.25 0.70 5.50 0.73 1.18 4.38 2.90 0.47 10.68 47.30 24.39 13.15 10.36 12.71 7.83 0.11 0.00 0.00 3.44 2.49 1.81 56 I11_SR1 SilentIntronRegion 0 5.92 0.01 0.32 0.49 5.23 0.55 0.89 3.00 2.56 0.60 9.72 50.34 28.15 10.76 7.31 9.21 7.11 0.00 0.00 0.00 1.17 2.10 1.03 57 I11_AR1 ActiveIntronRegion 0 12.38 0.52 0.00 0.78 6.81 2.26 1.64 3.64 0.83 0.66 7.37 43.79 19.68 16.43 12.24 13.85 5.75 0.00 0.00 0.00 1.44 1.52 1.13 58 I11_SR2 SilentIntronRegion 0 12.93 0.00 0.33 1.22 3.73 1.07 1.66 6.80 3.87 0.31 14.03 42.31 20.43 18.45 19.95 20.89 12.87 0.49 0.00 0.00 8.82 3.73 4.47 59 I11_AR2 ActiveIntronRegion 0 10.34 0.00 0.00 1.05 7.10 0.81 1.61 7.78 3.78 0.15 12.70 43.62 15.67 16.61 12.91 17.48 6.90 0.00 0.00 0.00 7.78 2.80 2.21 60 I11_SR3 SilentIntronRegion 0 11.64 0.00 0.00 0.39 10.87 0.36 2.00 4.32 3.04 0.00 7.48 35.12 18.09 15.33 10.30 20.08 5.15 1.43 0.00 0.00 3.67 4.06 3.66 61 ER12a ExonRegion 0 332.46 10.21 14.93 31.25 189.68 17.35 40.09 106.16 52.95 29.61 133.33 452.04 226.11 597.43 590.32 365.93 202.54 0.00 0.00 0.00 67.26 79.36 29.81 62 E12a_E14a KnownJunction 1 93.65 0.00 0.00 1.70 15.96 0.00 0.00 10.76 4.51 5.00 12.16 81.93 33.76 79.46 78.74 54.09 38.90 0.00 0.00 0.00 0.00 3.12 3.41 63 E12a_E15a KnownJunction 0 350.43 12.04 24.90 19.21 153.82 21.24 20.58 93.28 50.66 19.82 124.77 323.51 190.08 452.65 455.78 302.57 177.47 0.00 0.00 0.00 60.60 63.99 35.68 64 I12 Intron 0 7.67 0.00 0.15 0.86 5.86 1.24 1.06 4.88 2.72 1.58 12.54 61.27 29.33 18.86 6.86 16.02 6.40 0.00 0.00 0.00 2.04 2.28 1.48 65 I12_SR1 SilentIntronRegion 0 6.99 0.00 0.24 0.80 6.86 1.08 0.78 4.59 2.07 1.37 11.54 52.04 23.05 19.78 5.30 16.98 6.14 0.00 0.00 0.00 2.59 2.93 1.34 66 I12_AR1 ActiveIntronRegion 0 8.93 0.00 0.00 0.97 4.06 1.53 1.58 5.44 3.90 1.97 14.42 78.38 40.91 17.28 9.75 14.33 6.90 0.00 0.00 0.00 1.05 1.11 1.75 67 ER13a ExonRegion 0 0.35 0.00 0.00 0.00 0.45 0.00 0.00 1.15 0.00 0.19 1.29 0.72 1.56 3.52 3.38 1.98 2.75 0.00 0.00 0.00 0.00 0.00 0.00 68 I13 Intron 0 33.92 0.32 1.21 1.67 14.54 3.51 3.41 8.35 5.32 3.21 14.28 59.52 36.63 24.21 13.29 18.82 7.10 0.25 0.00 0.00 2.58 2.77 1.15 69 I13_SR1 SilentIntronRegion 0 36.07 0.35 1.34 1.71 15.76 3.81 3.78 8.89 5.74 3.43 14.83 62.69 38.91 24.37 13.81 17.89 6.92 0.28 0.00 0.00 2.64 2.88 1.12 70 E14_Aa NovelBoundary 1 85.72 0.00 0.00 1.93 29.80 8.46 12.23 18.11 13.14 3.01 14.64 111.19 82.62 23.72 19.66 28.28 0.00 0.00 0.00 0.00 0.00 2.76 4.01 71 ER14a ExonRegion 0 70.51 0.00 0.04 1.28 29.27 0.00 3.56 9.07 2.62 5.70 22.95 60.88 20.37 88.51 101.09 44.40 34.25 0.00 0.00 0.00 0.28 5.53 3.76 72 E14_Da NovelBoundary 0 70.23 0.00 0.00 8.06 42.53 0.00 3.97 9.16 1.65 1.45 9.48 25.21 5.84 21.19 4.45 20.17 8.60 0.00 0.00 0.00 0.00 0.00 0.00 73 I14 Intron 0 67.78 0.00 1.44 2.25 18.20 2.32 5.55 9.37 7.86 2.70 25.22 53.44 23.38 29.47 24.44 25.15 8.61 0.00 0.00 0.00 4.00 4.12 2.79 74 I14_SR1 SilentIntronRegion 1 67.66 0.00 0.94 1.98 17.25 2.70 5.47 9.22 7.93 2.98 26.35 54.27 22.14 31.44 25.69 27.41 9.39 0.00 0.00 0.00 4.65 4.49 2.97 75 I14_AR1 ActiveIntronRegion 0 70.11 0.00 4.65 4.00 24.57 0.00 6.14 10.51 7.59 0.99 18.67 49.44 31.71 17.70 17.11 11.42 3.94 0.00 0.00 0.00 0.00 1.87 1.70 76 E15_Aa NovelBoundary 0 116.02 0.00 1.66 5.93 22.33 4.94 19.65 13.39 9.32 2.42 16.21 88.83 19.97 14.24 20.89 20.85 4.39 0.00 0.00 0.00 0.00 0.00 0.00 77 ER15a ExonRegion 0 296.99 5.02 17.98 15.48 164.92 17.75 26.01 103.91 48.67 24.34 153.32 298.82 150.55 420.72 485.13 241.22 112.04 0.00 0.00 0.00 32.00 51.07 17.03 78 E15_Da KnownBoundary 1 213.52 0.00 6.80 8.32 138.29 5.11 10.69 56.60 19.13 5.35 22.90 149.00 78.40 81.17 61.31 45.29 0.00 0.00 0.00 0.00 0.00 24.00 3.67 79 ER15b ExonRegion 0 243.64 1.56 4.58 8.57 60.33 3.50 8.99 56.37 19.00 4.17 34.33 83.23 37.41 59.26 68.07 55.89 25.13 0.00 0.20 0.00 14.73 22.42 12.47