Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 COG6 Gene 0 29.34 35.67 15.91 31.51 29.35 60.07 33.30 20.26 24.92 33.03 38.38 97.34 49.98 31.45 19.32 26.85 35.35 15.00 28.37 18.75 29.41 57.17 27.74 2 255468 Transcript 0 1.72 8.85 0.91 8.78 3.41 2.44 5.54 5.78 1.63 5.26 0.77 9.71 4.29 1.76 1.93 0.46 0.00 0.00 1.27 4.84 0.00 6.46 0.18 3 416691 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 422759 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 455146 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 356576 Transcript 0 0.00 0.53 0.87 0.00 0.00 0.00 0.00 1.17 0.01 0.75 1.11 3.30 0.00 0.32 1.71 0.75 0.00 0.01 2.89 3.31 1.66 3.91 1.45 7 465775 Transcript 0 0.67 1.40 0.62 2.70 2.72 3.69 6.63 5.04 6.60 2.64 1.07 20.05 7.00 2.55 0.66 2.37 1.70 1.05 0.82 2.94 0.49 2.49 0.77 8 460701 Transcript 0 6.62 1.72 2.61 9.27 3.34 12.72 14.46 3.19 8.20 5.17 5.12 21.14 10.42 5.02 0.41 0.81 10.29 3.00 3.47 5.47 4.41 3.92 1.03 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 5.11 3.80 0.00 0.00 1.07 0.00 0.00 0.00 4.77 5.56 0.00 0.00 0.00 0.00 0.00 0.00 2.51 0.00 12 ER1b ExonRegion 0 1.41 2.17 0.00 0.00 0.54 8.31 1.59 0.00 0.00 0.84 0.00 0.00 0.00 4.55 2.90 1.19 0.66 0.25 0.00 0.00 0.00 1.53 0.00 13 ER1c ExonRegion 1 13.99 35.48 1.76 0.02 18.13 73.00 17.43 0.00 4.70 13.44 38.20 5.43 0.56 24.48 17.15 31.23 47.89 14.18 15.83 20.32 63.84 29.88 44.66 14 E1_Ad KnownBoundary 1 30.89 67.62 8.49 8.86 41.09 152.81 38.55 13.76 19.85 38.31 96.08 17.11 0.00 33.79 10.75 58.19 91.26 54.64 18.07 45.83 148.82 74.28 100.22 15 ER1d ExonRegion 1 6.49 15.11 4.19 4.30 7.31 39.07 16.82 7.71 13.55 27.44 36.80 10.17 7.89 19.12 4.94 12.99 46.14 24.66 17.13 22.03 72.77 20.33 28.52 16 E1a_E2a KnownJunction 0 0.00 0.00 1.60 0.00 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.72 5.76 0.00 17 E1a_E3a KnownJunction 1 0.00 18.81 16.44 15.92 3.48 0.00 20.67 22.80 32.78 46.23 118.56 18.91 26.46 48.80 20.40 51.18 137.91 39.42 36.80 49.92 201.33 42.13 30.82 18 ER2a ExonRegion 0 0.00 1.60 1.00 0.00 0.00 0.00 0.00 0.96 0.02 0.58 0.65 3.60 0.00 0.97 0.67 2.24 0.00 0.03 4.07 3.60 2.27 3.40 0.00 19 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 2.68 6.30 0.00 0.00 4.45 0.00 0.00 0.00 4.61 6.33 0.00 2.57 4.35 20 ER3a ExonRegion 0 7.51 34.02 14.03 32.91 24.23 59.20 36.30 23.02 35.36 56.87 92.81 104.48 68.10 56.52 26.13 61.34 77.80 58.81 53.40 54.99 78.80 88.80 84.73 21 E3a_E4a KnownJunction 0 7.56 68.54 16.50 45.38 68.51 174.50 79.18 19.76 24.77 49.45 73.97 176.16 120.61 40.73 11.00 22.99 50.96 24.17 29.93 27.16 57.89 83.40 31.84 22 ER4a ExonRegion 0 7.26 71.54 25.92 44.43 38.46 119.55 64.91 30.34 41.07 57.04 97.16 260.85 135.36 60.14 16.64 46.89 74.22 33.46 46.41 56.00 83.16 135.57 51.64 23 E4a_E5a KnownJunction 0 27.78 83.80 26.79 51.87 15.28 80.92 63.99 35.20 43.52 54.64 89.86 315.55 137.49 82.23 39.31 78.70 144.37 39.30 59.77 90.44 95.63 115.98 75.20 24 ER5a ExonRegion 0 26.87 44.60 21.89 46.59 23.76 55.85 53.27 41.98 54.95 51.18 95.11 386.20 168.92 71.87 23.11 56.77 99.87 42.72 44.87 47.89 70.48 150.65 59.03 25 E5a_E6a KnownJunction 0 44.90 28.48 22.29 51.91 50.76 74.22 81.30 50.93 59.32 58.02 122.29 393.73 211.51 92.77 38.20 40.33 92.29 36.60 45.18 40.20 67.96 129.08 45.58 26 ER6a ExonRegion 0 16.76 30.61 22.98 40.18 49.69 83.29 58.68 38.63 48.25 42.51 115.47 387.64 223.82 82.55 21.79 46.39 101.00 44.00 66.58 43.94 82.70 130.54 68.78 27 E6a_E7a KnownJunction 1 17.04 53.28 19.69 41.35 50.76 64.51 25.44 38.40 51.48 47.87 76.81 431.39 224.50 85.29 49.45 88.35 86.77 47.51 82.54 28.25 53.87 104.77 98.00 28 ER7a ExonRegion 0 9.65 42.22 15.06 38.55 53.06 79.85 62.72 36.41 54.39 59.09 133.50 380.41 190.15 111.18 29.55 68.26 110.72 41.59 65.81 39.06 74.03 141.29 102.68 29 E7_Ab NovelBoundary 0 10.30 62.95 13.13 36.33 63.41 142.42 88.68 39.39 49.94 54.56 115.66 393.58 245.60 131.44 28.80 61.95 147.36 24.54 54.31 62.32 94.83 114.57 110.20 30 E7a_E7c KnownJunction 1 14.15 29.60 23.80 42.25 26.66 102.61 99.90 36.23 39.03 60.36 85.23 434.24 163.46 83.00 24.35 59.90 138.01 24.29 53.18 41.42 102.30 82.36 66.16 31 ER7b ExonRegion 1 11.64 43.98 15.52 38.27 40.81 107.43 88.04 39.61 45.96 58.35 99.71 437.28 191.12 116.87 34.45 57.83 146.89 26.02 58.80 52.66 106.15 99.66 88.59 32 ER7c ExonRegion 0 1.26 1.23 0.36 1.68 0.87 1.78 3.72 2.25 1.98 1.70 0.26 4.94 1.61 0.63 0.07 0.14 1.32 0.08 0.87 2.25 0.31 0.22 0.18 33 E7_Ac KnownBoundary 0 0.00 5.85 1.30 4.96 0.00 2.73 5.87 5.83 0.00 4.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 0.00 0.00 0.00 0.00 34 ER7d ExonRegion 0 24.73 40.67 18.47 35.01 39.10 83.23 66.61 34.57 53.69 76.66 93.52 361.51 191.89 104.80 25.12 61.35 97.05 34.55 73.17 42.71 88.05 81.23 69.77 35 E7b_E8a KnownJunction 0 21.26 49.66 13.16 23.71 35.91 84.95 46.90 31.67 61.57 79.78 100.34 284.34 155.02 147.80 29.92 50.76 81.44 54.55 114.07 35.73 59.74 86.65 63.17 36 ER8a ExonRegion 0 16.91 44.26 14.33 32.25 59.78 108.84 55.82 31.02 56.87 66.67 99.73 351.01 123.29 116.82 28.98 80.94 115.46 57.87 93.97 38.73 99.52 121.44 82.57 37 E8_Da KnownBoundary 1 2.89 6.71 1.83 6.19 0.00 4.88 2.25 5.46 9.90 2.55 0.00 48.92 43.18 2.30 4.45 8.20 4.77 0.00 0.00 0.00 2.35 5.57 0.00 38 E8a_E9a KnownJunction 1 34.15 21.58 15.08 37.69 43.46 136.57 83.03 18.77 43.52 71.51 73.28 362.67 138.79 119.84 15.82 51.95 90.98 30.47 39.25 17.13 73.39 165.27 93.81 39 ER8b ExonRegion 1 0.08 1.57 0.89 3.72 4.57 5.61 9.55 7.82 11.23 3.57 1.88 35.15 12.39 4.47 1.26 4.59 2.08 2.02 0.78 3.63 0.66 4.76 1.36 40 E8_Db NovelBoundary 0 6.67 0.00 1.45 4.49 4.33 11.98 19.78 4.23 12.82 3.73 2.68 12.00 21.59 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 2.82 0.00 41 I8 Intron 0 2.91 3.52 1.73 4.99 4.78 10.06 10.30 5.98 7.08 5.38 2.55 24.32 11.87 2.07 1.67 2.78 4.22 1.07 1.45 3.86 1.39 3.58 1.94 42 I8_AR1 ActiveIntronRegion 0 1.85 3.82 2.01 3.56 2.09 7.30 8.13 5.63 7.18 3.45 2.85 31.01 10.86 2.98 1.55 0.23 3.35 0.31 1.64 2.85 0.83 5.82 0.98 43 I8_AR2 ActiveIntronRegion 0 0.34 1.37 7.52 4.27 1.45 1.98 14.85 5.23 9.01 5.95 4.60 44.93 16.86 8.60 0.94 5.22 7.94 1.75 1.81 8.17 2.26 3.38 0.32 44 I8_SR1 SilentIntronRegion 1 0.00 1.75 2.41 1.63 3.73 5.03 5.70 3.20 4.65 2.52 2.47 45.11 12.76 3.63 3.91 0.66 4.68 2.64 5.44 5.05 2.87 5.89 2.25 45 I8_AR3 ActiveIntronRegion 0 3.76 3.10 3.20 5.65 5.60 6.46 8.92 5.91 5.30 2.75 1.81 31.42 17.96 1.74 2.57 2.29 5.76 2.36 0.46 3.84 1.10 4.24 1.86 46 I8_SR2 SilentIntronRegion 0 5.01 4.82 2.59 3.85 7.16 7.54 10.66 4.06 4.36 3.51 0.61 14.32 18.79 1.45 1.56 4.69 5.70 0.00 0.00 0.67 0.35 0.66 1.39 47 I8_SR3 SilentIntronRegion 0 2.56 3.94 0.96 5.14 4.87 11.16 10.20 6.44 7.53 6.68 2.62 24.69 9.94 2.08 1.53 3.66 3.88 0.77 2.16 4.45 1.56 4.05 2.44 48 I8_AR5 ActiveIntronRegion 0 3.38 2.05 0.91 6.83 5.49 17.91 15.17 4.89 8.53 5.64 5.39 18.88 13.41 1.26 2.09 1.86 4.99 2.56 0.11 2.77 3.10 2.31 1.97 49 E9_Aa NovelBoundary 1 10.59 0.00 5.35 3.66 8.66 22.49 20.36 0.00 10.01 8.57 2.42 16.96 13.64 0.00 4.45 0.00 21.79 2.11 0.00 3.26 2.35 0.00 0.00 50 ER9a ExonRegion 0 44.86 36.31 16.14 39.29 44.05 125.95 65.07 26.14 52.54 68.65 106.50 328.72 121.71 106.32 28.23 50.60 90.33 33.80 58.11 37.36 106.69 144.68 74.49 51 E9_Ab KnownBoundary 0 91.20 60.38 19.93 48.31 60.19 117.66 67.75 28.63 74.07 80.99 130.72 320.20 142.04 112.25 65.02 56.14 115.66 49.95 69.74 61.36 146.35 153.76 84.68 52 ER9b ExonRegion 0 48.87 53.91 15.36 43.43 33.84 96.27 66.78 31.52 49.53 62.78 106.57 268.67 117.62 89.03 33.07 68.29 114.67 54.30 94.80 46.25 101.62 119.90 66.91 53 E9_Da KnownBoundary 1 23.41 0.00 4.49 6.53 11.63 5.39 25.66 2.42 7.90 4.24 5.05 6.30 6.66 2.47 0.00 0.00 21.22 4.68 13.93 0.00 0.00 0.00 0.00 54 E9a_E9c KnownJunction 0 47.86 63.48 18.75 56.27 28.52 149.06 98.09 49.00 42.91 54.77 126.77 281.94 85.87 92.47 47.72 62.80 76.76 67.65 65.13 72.48 128.50 141.33 65.47 55 ER9c ExonRegion 0 6.62 1.72 2.61 9.27 3.34 12.72 14.46 3.19 8.20 5.17 5.12 21.14 10.42 5.02 0.41 0.81 10.29 3.00 3.47 5.47 4.41 3.92 1.03 56 E9_Ac KnownBoundary 0 3.04 6.12 2.96 11.59 0.00 0.00 15.10 1.56 4.60 4.38 0.00 24.16 20.94 0.00 0.00 0.00 8.42 2.32 0.00 6.14 0.00 5.45 0.00 57 ER9d ExonRegion 0 24.14 64.47 21.68 45.39 46.61 217.25 104.72 23.51 58.02 67.47 122.94 237.36 106.63 87.97 37.30 60.39 94.57 46.66 71.58 41.15 121.93 142.94 62.51 58 E9b_E10a KnownJunction 0 28.38 56.31 17.36 36.96 72.75 258.20 107.76 17.13 54.08 54.96 90.50 258.68 138.14 103.89 24.85 57.51 92.47 33.78 56.66 23.14 88.03 129.02 81.01 59 ER10a ExonRegion 0 27.86 54.04 17.88 48.97 69.13 144.75 75.55 38.59 51.23 81.26 94.55 240.11 108.56 74.34 36.67 96.42 81.49 58.19 60.31 46.29 90.71 132.56 80.78 60 E10_Da NovelBoundary 0 2.74 11.91 5.47 30.07 12.56 39.69 23.80 22.80 21.41 45.72 21.43 44.11 12.01 10.89 4.45 40.67 13.84 33.74 24.19 25.69 38.67 36.25 21.94 61 E10b_E11a KnownJunction 1 21.26 97.22 33.26 65.56 46.10 93.41 75.03 58.20 78.85 117.14 123.08 306.25 104.38 64.22 47.84 172.60 45.63 75.65 67.48 53.69 108.36 156.33 143.32 62 ER10b ExonRegion 1 17.46 73.21 24.51 57.58 50.84 109.11 63.55 50.13 66.39 104.66 119.84 280.33 96.15 75.52 39.89 138.20 59.42 72.06 77.25 51.60 109.08 166.68 129.95 63 E11_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 5.11 12.45 1.60 1.45 1.67 2.21 0.00 27.11 0.00 4.45 4.36 0.00 3.77 3.58 0.00 0.00 0.00 0.00 64 ER11a ExonRegion 0 29.82 57.21 25.89 48.99 54.21 110.31 64.41 47.27 79.07 99.92 111.54 281.60 121.48 79.00 40.52 114.88 90.63 32.84 64.40 47.16 75.36 237.77 97.87 65 E11a_E12a KnownJunction 0 45.34 55.52 30.60 55.90 41.68 133.33 77.24 45.63 89.26 111.67 125.29 205.87 73.37 97.30 59.46 67.16 80.50 14.34 27.95 41.10 92.42 119.41 47.55 66 I11_AR2 ActiveIntronRegion 1 1.08 3.87 2.64 3.06 0.00 2.32 4.49 2.79 1.11 4.37 0.00 20.98 12.47 1.69 0.00 1.03 0.89 0.64 0.00 1.85 0.00 2.15 0.51 67 E12_Aa NovelBoundary 0 0.00 18.55 0.00 3.76 0.00 0.00 14.75 10.80 4.80 3.47 0.00 13.05 6.82 0.00 0.00 4.36 0.00 0.00 0.00 3.26 0.00 3.06 3.33 68 ER12a ExonRegion 0 66.31 102.85 32.39 67.17 61.41 204.79 105.77 46.87 79.70 94.07 122.67 300.53 186.53 94.90 49.62 105.54 109.57 48.73 97.45 54.83 79.50 210.14 87.35 69 E12_Da NovelBoundary 0 0.00 0.00 3.43 1.27 0.00 0.00 2.25 0.00 1.45 1.21 4.47 43.36 0.00 4.65 0.00 4.36 4.77 0.00 0.00 0.00 0.00 0.00 0.00 70 E12a_E13a KnownJunction 0 179.29 189.70 34.68 102.35 101.27 379.84 194.36 61.61 99.36 97.11 169.04 389.23 190.41 96.36 100.01 197.38 152.13 84.48 111.72 96.83 129.98 396.67 171.92 71 E13_Aa NovelBoundary 0 10.67 5.92 6.15 11.42 0.00 2.73 16.08 10.68 10.39 6.12 4.90 31.21 20.29 0.00 8.90 0.00 8.42 3.77 0.00 0.00 0.00 13.72 3.50 72 ER13a ExonRegion 0 62.08 93.47 30.18 83.62 58.95 148.70 94.98 44.39 73.25 80.68 133.97 278.86 192.82 111.47 66.66 105.35 130.04 61.40 101.81 64.20 120.17 168.99 80.33 73 E13a_E14a KnownJunction 0 64.90 115.31 31.52 119.57 97.79 157.24 145.21 50.40 90.97 91.87 117.08 246.53 148.69 130.08 76.52 108.26 164.56 73.04 140.43 64.68 124.67 151.49 92.53 74 ER14a ExonRegion 0 64.64 79.85 33.66 102.26 85.42 183.89 111.80 63.78 83.01 99.27 140.56 291.96 216.80 116.27 68.80 112.83 145.20 65.36 106.79 61.50 88.16 177.57 96.18 75 E14a_E15a KnownJunction 0 131.06 94.52 52.39 116.44 50.42 262.29 180.80 82.44 97.97 133.34 169.94 233.18 126.62 119.31 113.73 126.80 182.42 68.90 133.75 61.94 109.10 190.19 122.07 76 ER15a ExonRegion 0 82.21 79.40 38.50 88.26 80.92 188.42 97.45 60.86 80.19 110.57 150.09 260.61 134.93 108.12 59.88 105.26 169.02 60.89 117.65 49.74 95.09 140.12 108.11 77 E15a_E16a KnownJunction 0 141.80 122.74 40.15 86.60 77.59 194.04 82.89 53.15 70.05 100.57 167.83 161.90 184.24 101.01 77.14 110.74 138.29 55.05 178.17 66.60 103.04 175.13 137.69 78 ER16a ExonRegion 0 105.83 116.10 54.37 108.58 98.21 242.98 122.74 87.67 88.06 121.57 176.18 223.77 200.11 102.02 70.01 125.16 188.52 82.64 145.17 51.34 113.82 194.19 136.88 79 E16a_E17a KnownJunction 0 135.21 157.27 65.82 143.87 143.80 397.10 211.54 96.03 84.40 128.16 172.36 320.05 179.53 145.21 134.00 202.77 222.35 86.47 151.25 64.24 134.74 248.42 153.23 80 E17_Aa NovelBoundary 0 3.63 6.71 0.00 21.58 0.00 19.19 0.00 2.55 2.95 4.19 0.00 6.30 0.00 0.00 0.00 0.00 4.77 2.11 4.80 3.07 3.03 8.88 4.35 81 ER17a ExonRegion 0 49.05 61.39 52.25 91.11 102.82 220.45 108.50 67.06 73.46 90.58 136.61 216.85 124.70 113.28 62.20 114.24 142.43 66.59 123.03 62.74 124.34 129.88 104.36 82 E17_Da NovelBoundary 0 0.00 5.72 2.99 10.16 3.82 5.79 8.30 0.00 2.49 0.00 2.68 12.60 6.82 2.30 0.00 12.73 4.49 0.00 0.00 3.20 0.00 0.00 4.27 83 E17a_E18a KnownJunction 0 39.86 52.89 49.91 63.69 91.09 171.83 72.56 46.99 51.74 80.83 113.77 198.96 106.00 113.49 38.45 85.70 103.97 43.57 99.96 42.63 130.60 88.18 81.69 84 E17a_E19a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 3.15 2.94 0.00 85 I17_SR2 SilentIntronRegion 0 6.10 23.68 9.29 11.70 7.21 3.23 2.86 3.25 5.08 1.68 0.00 3.38 0.62 1.16 6.36 1.78 1.32 3.36 3.17 3.48 3.51 2.90 2.67 86 I17_AR2 ActiveIntronRegion 0 6.35 61.18 11.64 30.10 9.81 2.90 4.63 18.72 8.75 0.57 0.00 4.33 3.13 1.62 12.57 0.00 0.00 5.54 0.00 2.48 0.00 8.33 4.65 87 I17_AR3 ActiveIntronRegion 0 17.24 59.17 5.99 22.10 17.00 4.38 6.81 7.51 5.64 2.84 0.86 12.80 7.57 1.38 6.36 3.30 1.46 1.55 1.41 6.21 0.73 4.14 3.73 88 ER18a ExonRegion 0 97.81 100.67 47.12 85.00 76.80 127.52 68.00 49.11 46.85 73.05 54.10 161.90 74.63 48.49 47.31 37.04 41.56 13.09 43.93 29.98 31.50 113.58 37.69 89 E18_Da KnownBoundary 0 2.74 20.85 13.48 18.11 31.75 21.92 11.08 8.71 3.33 9.37 0.00 0.00 12.99 2.24 0.00 0.00 0.00 0.00 0.00 5.69 0.00 12.61 3.67 90 E18_Db KnownBoundary 0 0.00 6.31 1.27 4.99 3.74 2.73 3.89 1.68 1.62 8.81 0.00 6.30 0.00 2.59 4.45 0.00 0.00 0.00 0.00 0.00 0.00 5.69 0.00 91 ER18b ExonRegion 1 4.76 26.94 12.87 29.98 22.07 24.30 12.91 15.56 7.41 19.21 0.97 23.81 23.45 6.50 5.80 2.97 0.00 0.00 0.00 4.26 0.00 22.40 2.94 92 ER18c ExonRegion 0 1.72 8.85 0.91 8.78 3.41 2.44 5.54 5.78 1.63 5.26 0.77 9.71 4.29 1.76 1.93 0.46 0.00 0.00 1.27 4.84 0.00 6.46 0.18 93 ER19a ExonRegion 0 0.62 1.37 0.95 1.55 1.55 4.86 1.97 0.51 2.06 0.65 0.60 2.51 0.82 0.41 0.28 0.41 0.86 0.51 1.03 1.38 1.27 1.99 1.44