Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 EBPL Gene 0 62.10 127.80 185.00 112.45 42.11 55.55 39.03 66.51 39.55 65.71 110.28 61.33 46.36 57.44 81.00 69.71 83.57 137.74 188.54 107.44 74.42 87.15 55.84 2 378274 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 378282 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 242827 Transcript 1 158.26 183.45 161.34 94.97 12.78 39.91 27.51 54.26 16.04 54.83 110.41 42.29 4.94 47.56 53.51 82.99 151.62 151.99 154.04 88.49 100.11 99.25 34.49 5 378268 Transcript 0 10.11 7.95 12.69 18.07 4.95 2.92 7.73 13.96 19.16 14.73 3.31 10.60 6.37 6.05 11.33 15.10 11.69 25.15 10.14 8.75 6.14 3.70 11.69 6 378284 Transcript 0 3.49 3.05 0.96 1.43 0.00 3.67 0.00 0.00 0.00 0.00 0.00 1.99 4.12 1.54 0.00 0.00 1.65 0.82 0.00 0.00 0.00 0.00 0.00 7 378272 Transcript 0 3.11 2.57 10.61 20.78 12.56 5.17 9.58 6.37 0.00 12.17 7.11 0.00 0.00 2.30 0.00 11.62 9.07 35.44 8.75 9.14 8.59 6.00 4.35 8 495963 Transcript 0 4.11 2.62 2.75 1.17 0.17 0.00 0.81 0.56 0.04 1.61 8.51 1.54 0.00 2.07 0.23 5.39 0.21 2.77 0.67 2.42 0.96 0.87 0.33 9 378270 Transcript 0 3.56 30.52 44.97 26.47 0.00 8.23 12.45 16.39 1.33 18.32 35.17 5.70 0.00 17.54 8.90 28.20 21.32 141.36 131.20 58.29 19.77 5.94 48.06 10 473576 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER1a ExonRegion 0 1.06 2.80 0.00 0.00 3.34 5.73 2.65 0.00 0.00 0.29 1.69 0.00 0.00 0.00 2.18 2.97 8.25 0.69 9.56 0.27 6.06 0.00 6.61 12 ER1b ExonRegion 0 12.35 20.84 3.17 0.00 10.48 26.44 8.27 0.86 0.21 1.34 14.50 0.00 0.00 1.89 6.29 18.82 21.18 15.71 31.06 4.79 10.83 2.08 28.88 13 ER1c ExonRegion 1 35.28 81.34 4.90 1.14 20.51 81.91 21.40 7.78 4.12 5.93 54.12 0.00 0.00 9.20 14.99 70.34 61.07 63.13 148.65 14.54 30.12 3.82 74.88 14 ER1d ExonRegion 1 71.58 292.10 13.70 4.50 56.11 211.33 83.85 26.45 15.20 20.57 154.51 3.80 0.00 14.76 31.03 195.44 146.04 115.40 543.44 90.91 156.33 8.46 188.12 15 E1_Ae KnownBoundary 1 171.29 641.07 37.58 9.92 140.41 426.35 166.80 56.89 29.60 41.96 273.23 6.30 0.00 14.13 39.06 360.50 257.78 755.36 1078.24 199.81 272.93 11.27 335.82 16 ER1e ExonRegion 1 20.07 92.44 38.66 20.94 17.61 45.34 24.65 29.65 14.37 31.17 113.94 8.38 4.36 24.08 35.38 57.52 96.91 97.94 194.40 76.75 108.45 20.23 52.17 17 E1a_E2a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 1.61 7.63 0.00 0.00 0.00 4.45 4.10 4.58 7.50 0.00 3.07 0.00 0.00 0.00 18 E1a_E3a KnownJunction 1 64.83 142.47 81.81 64.79 19.10 9.99 28.75 61.90 28.41 56.03 157.04 45.16 12.34 41.03 97.16 196.10 138.76 319.94 620.25 114.60 110.33 52.42 116.44 19 E1a_E5a NovelJunction 0 17.26 58.54 39.03 7.36 8.66 13.46 18.86 14.75 11.02 13.62 33.38 6.15 0.00 7.42 10.63 46.48 30.39 84.23 127.16 55.80 43.37 8.76 22.79 20 E1a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E1a_E7a KnownJunction 0 3.56 30.52 44.97 26.47 0.00 8.23 12.45 16.39 1.33 18.32 35.17 5.70 0.00 17.54 8.90 28.20 21.32 141.36 131.20 58.29 19.77 5.94 48.06 22 ER2a ExonRegion 0 4.30 7.16 7.75 3.86 13.53 1.04 3.50 2.54 1.00 3.87 7.77 7.65 4.38 2.74 6.22 9.91 10.01 23.36 3.11 8.18 1.91 0.63 8.32 23 E2_Db NovelBoundary 0 30.38 18.15 5.14 9.69 4.33 0.00 4.24 1.64 1.79 2.87 2.68 0.00 0.00 0.00 4.45 8.20 9.35 13.89 4.14 15.15 3.15 0.00 0.00 24 E2b_E3a KnownJunction 0 3.78 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 1.18 5.37 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 3.26 0.00 0.00 0.00 25 ER2b ExonRegion 0 4.44 5.25 3.76 2.33 0.35 0.00 1.62 1.12 0.08 2.03 11.66 3.07 0.00 4.14 0.47 6.42 0.43 5.54 1.34 1.58 1.92 1.75 0.66 26 I2_AR1 ActiveIntronRegion 0 6.51 6.12 6.20 3.13 4.91 3.55 7.98 2.15 2.67 4.12 2.19 14.61 13.43 0.83 5.61 8.51 7.82 14.13 11.00 14.62 3.88 2.14 7.03 27 I2_AR1 ActiveIntronRegion 0 12.41 11.85 6.55 9.35 5.72 0.00 1.14 3.52 6.52 2.57 3.33 3.58 16.66 8.01 0.00 3.07 3.53 3.70 5.60 14.09 0.53 1.72 2.63 28 ER3a ExonRegion 1 84.27 106.47 107.20 82.38 17.74 7.96 21.66 64.84 27.05 55.94 128.87 38.66 6.63 65.27 81.28 217.64 112.51 319.95 472.34 123.43 96.37 97.21 143.48 29 E3a_E4a KnownJunction 0 6.96 3.35 0.00 5.63 0.00 0.00 3.71 0.00 5.03 1.50 0.00 6.00 0.00 2.47 0.00 11.11 4.30 6.22 9.41 3.20 2.47 2.69 8.62 30 E3a_E5a KnownJunction 1 183.29 179.38 156.35 81.91 15.28 30.49 20.67 49.21 8.74 50.26 110.45 51.77 5.68 50.15 55.88 91.69 154.00 126.10 131.20 82.58 101.87 102.99 38.84 31 E3a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 E3a_E7a KnownJunction 0 3.11 2.57 10.61 20.78 12.56 5.17 9.58 6.37 0.00 12.17 7.11 0.00 0.00 2.30 0.00 11.62 9.07 35.44 8.75 9.14 8.59 6.00 4.35 33 ER4a ExonRegion 0 13.26 12.55 25.38 30.52 9.89 5.85 11.76 27.92 33.29 27.96 6.63 15.20 12.73 9.63 22.66 19.10 19.07 44.08 10.87 14.31 9.81 4.70 14.76 34 I4 Intron 0 20.92 19.82 12.97 15.33 11.71 5.36 10.68 11.07 7.35 11.25 8.46 16.18 14.86 5.44 6.58 17.11 10.54 26.06 19.21 18.63 6.92 7.86 7.76 35 I4_SR1 SilentIntronRegion 0 19.75 19.58 13.22 13.87 8.42 4.46 9.45 8.37 6.02 10.48 8.30 12.18 11.55 5.05 6.13 16.88 9.42 23.67 20.43 18.47 7.32 7.52 7.50 36 I4_AR1 ActiveIntronRegion 0 22.98 23.52 10.15 20.99 17.18 7.54 14.53 17.21 9.14 12.50 7.48 30.33 25.09 7.11 7.62 16.09 14.88 24.17 17.17 22.51 6.04 6.70 8.69 37 I4_SR2 SilentIntronRegion 0 22.13 16.66 15.29 13.49 15.24 5.60 10.12 12.19 9.23 12.12 9.96 12.56 13.42 4.79 6.80 18.86 9.17 34.87 17.97 15.04 6.71 10.06 7.54 38 I4 Intron 0 34.19 17.32 5.45 13.26 8.58 6.90 8.79 10.83 3.06 9.08 3.84 12.34 7.78 3.76 3.55 11.18 5.11 11.99 7.75 9.65 4.63 4.84 4.22 39 I4_AR1 ActiveIntronRegion 0 34.26 17.36 5.47 13.29 8.60 6.91 8.81 10.85 3.07 9.10 3.85 12.37 7.80 3.77 3.56 11.20 5.12 12.02 7.77 9.67 4.64 4.85 4.23 40 E5_Aa NovelBoundary 0 36.01 18.29 9.58 10.32 12.73 11.19 1.99 6.78 9.55 5.13 7.26 20.26 6.82 6.71 14.09 0.00 8.98 13.68 0.00 3.26 0.00 2.94 7.94 41 E5_Ab NovelBoundary 1 152.69 226.74 196.89 121.03 23.85 63.88 46.37 64.90 28.73 54.88 82.86 12.00 0.00 40.26 25.71 51.35 96.40 176.84 230.31 79.58 75.74 98.52 18.61 42 ER5a ExonRegion 1 133.23 187.52 166.33 108.03 10.28 49.32 34.35 59.31 23.34 59.40 110.38 32.81 4.20 44.96 51.15 74.30 149.24 177.87 176.87 94.40 98.36 95.51 30.14 43 ER5b ExonRegion 0 169.53 326.08 260.77 165.34 108.64 226.92 111.74 91.64 54.16 93.87 214.41 86.16 51.59 92.71 112.21 114.48 163.26 262.92 286.15 201.51 153.67 154.11 86.48 44 E5a_E6a KnownJunction 0 0.00 0.00 3.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 E5a_E7a KnownJunction 1 178.33 255.22 304.25 168.38 138.20 199.54 113.63 92.87 51.13 96.89 259.59 68.87 20.29 97.71 126.71 114.24 141.28 280.06 360.95 183.19 179.28 168.39 100.22 46 ER6a ExonRegion 0 7.37 7.89 2.55 1.42 0.21 4.55 0.05 0.00 0.00 0.00 0.15 1.39 5.25 0.13 0.00 0.95 1.98 1.63 0.00 0.17 0.18 0.00 0.12 47 ER6b ExonRegion 0 6.98 6.10 1.92 1.36 0.00 7.34 0.00 0.00 0.00 0.00 0.00 3.98 8.24 0.79 0.00 0.00 3.30 1.65 0.00 0.00 0.00 0.00 0.00 48 E6_Db NovelBoundary 0 27.19 8.49 5.32 19.94 0.00 2.90 22.61 12.86 0.00 2.77 0.00 6.30 6.82 0.00 5.19 0.00 3.93 7.01 0.00 9.78 3.15 0.00 0.00 49 E6b_E7a KnownJunction 0 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 I6 Intron 0 20.93 12.82 7.26 7.68 5.45 3.20 5.39 3.50 2.50 5.47 2.06 4.91 6.77 1.53 3.54 3.46 2.56 6.15 5.25 4.74 0.43 1.62 1.14 51 I6_SR1 SilentIntronRegion 0 21.01 12.87 7.29 7.71 5.47 3.21 5.41 3.51 2.51 5.49 2.07 4.93 6.79 1.53 3.55 3.47 2.57 6.17 5.27 4.76 0.43 1.62 1.14 52 ER7a ExonRegion 0 107.94 241.71 521.14 306.07 83.68 88.87 70.02 159.16 81.89 158.15 250.40 141.27 119.89 151.52 200.10 124.65 162.94 282.75 395.39 255.21 145.56 237.89 104.83 53 E7_Da KnownBoundary 0 82.53 165.76 402.97 181.06 86.08 23.74 28.18 86.83 56.19 68.61 123.24 115.09 126.94 54.80 121.02 31.19 58.91 51.32 134.31 124.45 47.01 166.37 30.56 54 ER7b ExonRegion 1 110.25 179.93 214.84 98.05 67.59 30.55 43.49 60.00 34.09 53.45 62.48 159.11 106.48 39.61 93.03 20.97 35.48 29.34 74.89 82.23 22.14 85.66 11.58 55 ER7c ExonRegion 0 2.82 4.07 8.17 1.36 0.00 1.22 1.32 1.15 1.24 1.53 0.64 0.00 0.00 0.00 0.97 0.00 0.00 4.31 5.31 0.71 0.00 0.69 0.00 56 IG21_AR2 ActiveIntergenicRegion 0 11.55 1.81 3.01 3.61 2.04 1.86 2.02 0.65 0.47 1.52 2.45 7.56 5.40 5.68 3.75 19.98 7.54 3.38 0.81 1.89 1.96 2.64 2.61 57 IG21_SR1 SilentIntergenicRegion 0 7.07 0.00 1.05 0.97 1.02 0.00 1.26 1.23 0.35 0.33 2.95 11.24 7.17 3.17 4.82 13.06 4.10 0.53 1.22 0.00 0.21 0.00 0.28