Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ELF1 Gene 0 45.13 3.89 7.87 11.37 43.07 28.48 18.66 20.71 26.49 8.65 306.98 492.04 332.42 289.90 103.05 276.30 162.61 5.28 5.57 6.19 53.13 95.01 55.78 2 405737 Transcript 0 11.26 12.20 1.31 1.76 4.80 5.72 6.23 2.49 6.05 3.94 23.50 11.25 12.01 42.89 14.16 29.75 39.95 4.66 3.25 4.59 43.54 43.75 66.79 3 239882 Transcript 1 95.25 2.00 0.00 4.17 23.30 0.54 9.44 7.18 5.91 2.61 203.04 131.84 53.19 126.14 42.57 142.46 87.29 0.00 0.00 0.00 0.00 3.54 0.00 4 379498 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 442101 Transcript 1 14.04 0.02 0.56 2.40 11.72 4.46 3.92 3.26 2.06 1.69 8.76 46.07 21.34 16.57 15.27 13.47 4.21 1.18 0.23 0.97 1.39 14.48 3.98 6 498824 Transcript 0 2.12 0.00 0.00 0.00 1.16 0.00 0.57 0.37 0.27 0.00 0.01 2.52 2.68 3.52 0.73 0.91 0.00 0.00 0.00 0.00 0.63 0.01 0.01 7 ER1a ExonRegion 0 2.90 2.03 2.62 1.46 0.94 5.65 2.43 2.77 4.76 1.64 14.05 3.90 4.22 34.27 14.96 26.26 24.56 6.09 6.50 3.10 39.07 21.80 27.13 8 E1a_E3a KnownJunction 0 19.63 22.36 0.00 2.06 8.66 5.79 10.02 2.22 7.35 6.23 32.96 18.61 19.80 51.50 13.35 33.24 55.35 3.23 0.00 6.07 48.00 65.70 106.45 9 I1_AR4 ActiveIntronRegion 0 11.40 1.22 3.70 4.44 9.01 1.71 4.62 2.92 5.99 0.84 1.89 7.68 6.94 2.46 9.28 8.33 6.63 0.74 2.64 2.12 1.25 1.40 6.80 10 I1_AR5 ActiveIntronRegion 0 7.99 1.20 3.60 4.20 3.92 1.22 3.60 1.09 6.76 1.28 3.00 10.14 5.57 3.55 5.01 13.25 11.96 0.85 2.65 1.26 2.41 3.06 11.76 11 ER2a ExonRegion 1 123.22 0.77 0.00 3.45 35.31 1.07 14.43 5.36 8.11 2.61 237.72 70.57 40.65 185.24 69.93 203.40 120.99 0.00 0.00 0.00 0.00 4.14 0.00 12 E2a_E3a KnownJunction 0 67.27 3.22 0.00 4.89 11.29 0.00 4.46 9.00 3.70 2.61 168.36 193.11 65.74 67.04 15.20 81.52 53.58 0.00 0.00 0.00 0.00 2.94 0.00 13 I2_AR2 ActiveIntronRegion 0 31.75 2.03 0.00 2.73 0.00 0.00 3.97 11.30 11.12 0.00 1.93 26.64 6.13 1.62 6.70 14.63 9.90 0.00 0.00 0.00 0.00 0.00 0.00 14 I2_AR3 ActiveIntronRegion 0 11.11 0.15 0.00 1.53 8.25 1.70 2.93 9.79 8.61 2.37 2.27 25.90 22.66 4.27 13.05 9.40 12.12 0.00 0.98 0.66 0.68 0.64 0.45 15 I2_SR7 SilentIntronRegion 0 25.69 0.69 3.43 3.73 13.67 1.11 5.45 6.74 3.77 1.00 4.75 28.88 22.98 4.09 12.02 15.01 6.86 0.05 0.42 0.52 0.83 1.08 1.61 16 I2_AR5 ActiveIntronRegion 0 12.50 0.00 0.00 2.27 2.68 0.00 1.32 1.40 1.94 0.00 7.27 20.41 9.38 5.65 7.87 0.99 6.60 0.00 0.00 0.00 0.00 0.00 2.94 17 ER3a ExonRegion 0 87.35 8.48 1.70 8.44 38.96 13.51 15.08 15.35 25.00 12.31 247.13 340.55 137.04 159.52 56.82 100.25 127.37 2.03 12.51 6.28 34.02 87.51 53.93 18 E3_Ab KnownBoundary 0 142.40 9.21 4.91 24.44 55.94 14.54 16.69 31.34 66.90 21.46 275.75 511.67 236.84 197.19 82.08 111.34 174.29 2.45 21.08 3.26 38.98 133.67 60.10 19 ER3b ExonRegion 0 50.81 13.05 8.08 18.03 56.46 31.23 24.33 26.63 60.00 17.38 560.55 650.04 330.09 452.99 170.73 419.01 314.85 6.38 11.93 13.23 81.18 229.87 99.15 20 E3a_E4a KnownJunction 0 212.85 18.15 18.21 18.71 76.91 44.12 11.44 37.71 45.54 19.56 572.09 876.59 510.03 623.52 250.70 698.71 337.82 12.77 9.04 17.07 117.69 355.22 116.69 21 I3_AR3 ActiveIntronRegion 0 23.16 0.23 0.79 1.48 9.86 1.57 7.35 2.54 2.06 0.00 0.90 25.17 33.56 2.15 6.14 6.02 12.22 0.00 0.00 0.00 0.98 0.93 0.33 22 I3_SR3 SilentIntronRegion 0 17.60 0.41 1.73 1.29 5.74 1.76 5.17 1.41 1.72 0.23 2.05 21.88 21.55 1.36 5.13 6.95 3.05 0.19 0.00 0.29 0.15 1.40 0.39 23 I3_AR4 ActiveIntronRegion 0 11.97 0.73 0.22 1.22 6.44 0.88 4.62 2.17 0.66 0.21 2.09 24.90 16.92 1.72 6.51 10.72 5.96 0.66 0.00 0.77 0.27 0.50 1.41 24 I3_SR4 SilentIntronRegion 0 16.49 1.08 0.81 1.80 9.71 0.00 5.16 1.60 2.12 0.76 1.03 20.20 11.02 0.94 5.68 8.42 3.51 0.00 0.00 0.00 0.39 0.37 1.82 25 I3_SR5 SilentIntronRegion 0 44.72 0.75 2.24 5.05 16.10 0.81 7.08 2.19 4.48 0.93 1.56 16.74 18.52 2.08 9.92 11.24 7.13 0.00 0.23 0.63 0.32 0.46 1.71 26 I3_SR6 SilentIntronRegion 0 12.95 0.92 1.24 0.00 5.46 0.00 3.60 0.58 1.67 0.00 0.88 5.02 8.75 1.82 7.08 6.06 2.24 0.00 0.00 0.48 1.00 0.94 1.33 27 ER4a ExonRegion 0 122.78 9.24 19.34 24.86 65.73 45.96 26.68 52.02 59.50 15.86 852.87 940.19 748.36 735.69 225.14 672.19 458.44 13.39 7.81 20.75 147.02 245.50 139.42 28 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E4a_E6a KnownJunction 0 64.01 3.35 18.30 25.30 64.26 99.54 41.91 41.20 57.64 9.43 822.16 1262.66 984.68 701.87 274.55 804.06 424.59 14.59 0.00 25.95 114.78 218.36 137.78 30 I4 Intron 0 10.75 0.00 1.33 2.00 6.20 1.46 3.28 3.35 2.86 0.27 1.29 9.61 5.50 1.17 5.89 5.19 3.67 0.00 0.00 0.20 1.05 0.53 1.21 31 I4_SR1 SilentIntronRegion 0 15.11 0.00 1.16 2.04 8.30 2.94 4.56 4.12 4.16 0.53 2.12 8.03 6.46 1.59 4.75 9.02 5.68 0.00 0.00 0.00 0.93 0.98 0.46 32 I4_AR1 ActiveIntronRegion 0 13.14 0.00 1.73 3.53 9.15 1.26 3.55 6.10 2.26 0.27 1.53 14.51 5.88 1.34 7.90 4.77 2.76 0.00 0.00 0.25 0.87 0.50 2.10 33 E5_Aa NovelBoundary 0 328.72 341.32 304.01 470.37 191.00 151.56 387.84 439.70 335.76 340.45 88.07 86.13 117.69 106.66 155.26 306.67 286.96 469.54 237.94 358.77 151.97 91.18 252.08 34 ER5a ExonRegion 0 6.37 0.00 0.00 0.00 3.49 0.00 1.72 1.11 0.80 0.00 0.02 1.25 8.03 3.39 2.19 2.72 0.00 0.00 0.00 0.00 1.90 0.04 0.02 35 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER6a ExonRegion 0 45.98 8.10 23.45 36.13 104.01 70.45 49.24 55.50 62.44 16.26 926.45 1408.52 994.55 921.09 259.45 902.37 431.65 14.27 12.48 13.83 123.55 245.62 158.31 37 E6a_E7a KnownJunction 0 59.49 14.08 23.48 40.99 141.00 72.57 62.09 59.15 68.52 22.35 1017.42 1868.11 1020.55 1305.79 434.39 1196.44 439.27 5.60 18.45 17.45 119.29 478.78 237.74 38 E6a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 3.40 0.00 0.00 0.00 0.00 0.00 9.05 24.91 6.49 19.78 4.45 16.06 4.58 2.36 0.00 0.00 2.78 6.25 3.84 39 I6 Intron 0 13.59 0.33 1.39 0.99 6.12 0.20 4.18 3.36 2.60 0.37 4.63 16.81 11.67 2.78 5.57 6.15 6.47 0.30 0.00 0.23 1.20 0.34 1.60 40 I6_SR1 SilentIntronRegion 0 13.62 0.33 1.39 1.00 6.13 0.20 4.19 3.37 2.61 0.37 4.64 16.85 11.69 2.78 5.59 6.16 6.48 0.30 0.00 0.23 1.20 0.34 1.60 41 E7_Aa NovelBoundary 0 6.30 0.00 4.58 2.06 52.21 0.00 20.05 2.55 5.06 1.56 5.00 25.51 19.80 2.47 0.00 20.08 9.07 0.00 0.00 0.00 0.00 0.00 0.00 42 ER7a ExonRegion 0 49.11 13.37 27.70 34.46 123.16 73.40 46.36 56.78 88.23 22.67 1070.19 1631.79 953.68 994.16 283.73 923.76 487.27 10.00 16.14 18.65 151.06 335.53 157.25 43 E7_Ab KnownBoundary 0 39.27 8.55 30.48 32.10 126.49 57.92 11.66 60.01 91.06 18.05 682.44 1434.17 1045.55 750.08 211.88 610.52 322.95 13.80 8.66 14.89 112.19 160.74 109.52 44 ER7b ExonRegion 0 62.98 3.28 26.17 38.91 105.48 77.44 40.50 51.69 70.66 23.99 712.49 1888.56 1290.20 805.72 255.77 788.30 416.47 17.43 13.01 15.25 112.11 254.83 142.32 45 E7a_E8a KnownJunction 0 104.46 6.58 30.37 50.81 122.16 88.70 69.03 64.12 91.46 32.21 848.74 2214.42 1378.48 1133.86 369.25 1063.82 679.57 9.74 13.65 23.39 115.28 399.06 194.97 46 I7 Intron 0 18.03 0.70 3.46 2.30 9.09 1.44 6.29 4.82 6.66 0.76 9.42 30.72 23.94 6.44 5.13 9.22 10.16 0.39 0.16 0.73 2.71 7.80 3.61 47 I7_SR1 SilentIntronRegion 0 34.05 1.39 6.25 3.48 19.22 3.77 9.51 4.40 2.52 0.00 6.63 17.17 29.46 11.87 7.71 10.17 15.82 0.94 1.09 0.73 5.28 9.98 6.03 48 I7_SR2 SilentIntronRegion 0 16.81 0.65 3.25 2.21 8.32 1.27 6.05 4.86 6.99 0.82 9.65 31.81 23.55 6.03 4.94 9.16 9.73 0.34 0.08 0.73 2.52 7.64 3.43 49 E8_Aa NovelBoundary 0 27.56 3.35 1.83 6.79 10.44 2.27 8.39 14.62 15.28 5.53 19.32 105.18 26.46 13.13 0.00 28.28 29.92 0.00 0.00 0.00 2.59 14.70 11.95 50 ER8a ExonRegion 0 59.04 2.47 16.13 18.25 98.72 73.90 54.55 37.86 61.64 24.40 734.18 1958.10 1346.49 969.33 301.83 674.78 472.30 11.81 11.22 16.39 124.33 273.83 135.75 51 E8_Da NovelBoundary 0 0.00 0.00 0.00 0.00 3.99 5.79 0.00 0.00 14.50 1.24 9.37 44.11 34.58 4.47 0.00 25.21 8.60 0.00 0.00 0.00 2.90 19.23 3.67 52 E8a_E9a KnownJunction 1 64.83 2.96 5.09 17.41 149.83 62.58 75.83 40.79 58.25 18.45 794.52 1767.73 1143.11 669.85 100.01 534.48 411.78 5.76 13.08 16.62 121.27 259.14 94.50 53 I8 Intron 0 13.91 0.48 0.43 2.57 7.84 3.63 3.98 4.90 7.29 1.08 15.16 62.99 50.09 15.27 7.81 14.36 8.37 0.22 0.00 0.00 2.09 28.38 2.79 54 I8_SR1 SilentIntronRegion 0 14.83 1.14 0.37 3.04 6.33 4.84 4.38 5.09 5.92 0.68 18.10 63.75 37.34 11.92 9.78 19.70 11.34 0.00 0.00 0.00 2.93 29.28 3.43 55 I8_AR1 ActiveIntronRegion 0 13.76 0.07 0.60 2.84 10.64 3.01 4.45 5.74 9.57 1.41 14.43 61.24 55.15 17.99 6.87 11.29 6.71 0.01 0.00 0.00 1.45 29.64 2.59 56 I8_SR2 SilentIntronRegion 1 11.82 0.00 0.00 0.00 1.77 2.21 0.88 0.99 2.82 1.13 8.71 69.10 73.27 15.76 5.24 9.38 5.40 1.78 0.00 0.00 1.95 21.08 1.56 57 E9_Aa NovelBoundary 0 13.48 0.00 5.41 1.63 7.81 2.90 8.52 0.00 5.90 5.24 24.53 99.63 34.90 18.89 12.36 30.33 14.03 0.00 9.60 0.00 6.18 34.96 8.45 58 ER9a ExonRegion 0 94.34 7.60 22.88 26.66 129.12 87.17 55.04 49.22 72.79 26.50 904.47 1852.14 1334.45 888.28 271.14 767.99 469.26 12.83 16.12 15.40 122.37 247.69 154.88 59 E9a_E10a KnownJunction 0 99.05 3.35 29.60 46.08 129.88 73.20 38.55 57.30 70.20 17.46 788.09 1723.31 1357.54 867.51 299.40 689.48 387.94 12.81 12.33 14.45 90.63 273.10 143.24 60 E9a_E11a NovelJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 2.22 0.00 1.16 7.74 12.45 21.26 15.13 4.45 3.33 0.00 1.91 0.00 0.00 0.00 2.94 0.00 61 ER10a ExonRegion 0 114.88 7.08 21.88 32.44 132.00 81.29 51.81 62.68 69.60 22.99 849.69 1477.65 922.60 802.86 292.76 827.72 436.55 11.07 11.08 13.85 148.17 238.72 149.68 62 E10a_E11a KnownJunction 0 109.28 11.64 26.85 36.13 139.64 84.04 42.48 71.18 83.48 21.60 1193.14 997.98 774.46 950.80 356.27 882.25 538.38 15.88 20.24 14.06 198.24 229.63 153.31 63 I10 Intron 0 20.99 0.58 2.35 2.40 15.11 2.95 6.86 4.58 5.85 1.97 8.81 40.43 37.23 8.37 12.08 16.32 9.04 0.20 0.58 0.88 2.46 4.38 4.80 64 I10_SR1 SilentIntronRegion 0 20.57 0.58 2.33 2.19 14.82 2.85 6.79 4.53 5.67 1.94 8.47 40.53 36.23 8.20 11.69 15.97 9.04 0.17 0.61 0.89 2.45 4.33 4.59 65 I10_AR1 ActiveIntronRegion 0 39.53 1.25 4.98 9.24 34.08 5.04 10.35 6.52 11.16 3.22 21.05 52.16 69.90 11.70 23.84 29.11 6.24 0.18 0.00 0.08 1.65 5.05 11.78 66 I10_AR2 ActiveIntronRegion 0 22.00 0.07 0.39 4.71 9.62 5.46 6.62 4.94 9.00 2.53 11.80 25.05 50.75 12.72 17.99 19.74 11.99 1.47 0.00 1.19 3.59 6.35 7.59 67 E11_Aa NovelBoundary 0 99.20 2.70 1.69 8.72 29.03 0.00 13.96 11.95 8.74 8.86 23.64 44.56 68.02 11.48 4.45 41.78 28.52 0.00 0.00 0.00 2.90 2.94 4.35 68 ER11a ExonRegion 0 26.87 1.69 2.30 3.69 15.87 11.91 7.70 7.58 7.34 2.70 73.78 79.02 69.82 58.95 32.67 64.99 36.03 1.53 1.37 1.42 12.70 20.54 12.43 69 E11_Da KnownBoundary 1 121.28 8.09 2.31 7.86 116.21 37.42 27.25 29.70 8.07 6.07 10.32 256.73 121.58 29.61 81.83 18.29 0.00 0.00 4.80 0.00 0.00 47.58 10.33 70 E11_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71 E11_Dc KnownBoundary 0 3.70 0.00 1.39 1.90 13.67 2.90 4.15 4.56 3.01 0.00 4.79 43.06 20.78 4.89 19.90 15.64 7.95 0.00 0.00 0.00 0.00 4.90 0.00 72 ER11b ExonRegion 1 56.24 4.07 3.68 8.57 87.15 26.98 19.10 27.90 11.12 5.41 13.81 249.87 131.99 25.06 64.66 28.45 7.54 0.00 3.19 0.00 0.00 28.87 7.55 73 ER11c ExonRegion 1 38.10 4.07 3.68 5.45 57.53 25.67 18.54 16.42 10.50 4.59 11.60 201.32 103.18 17.87 42.07 20.80 6.60 0.00 3.19 0.00 0.00 19.79 2.94 74 ER11d ExonRegion 0 28.08 0.04 1.12 4.81 20.04 8.92 7.84 6.53 4.12 3.38 8.46 67.22 36.18 13.36 26.09 10.88 3.83 0.00 0.46 1.94 0.00 22.71 4.12